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Lysobacter daecheongensis sp. nov., isolated from sediment of stream near the Daechung dam in South Korea

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Abstract

A Gram-negative, aerobic, rod shaped, non-spore-forming bacterial strain, designated Dae08T, was isolated from sediment of the stream near Daechung dam in South Korea, and was characterized in order to determine its taxonomic position, using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain Dae08T belongs to the family Xanthomonadaceae of the Gammaproteobacteria, and is related to Lysobacter brunescens ATCC 29482T (97.3%). The phylogenetic distances from any other species with validly published names within the genus Lysobacter were greater than 3.7%. The G+C contents of the genomic DNA of strain Dae08T was 69.3 mol%. The detection of a quinone system with Q-8 as the predominant compound and a fatty acid profile with iso-C15:0, iso-C17:1, ω9c, iso-C17:0, iso-C16:0, and iso-C11:0 3-OH as the major acids supported the affiliation of strain Dae08T to the genus Lysobacter. DNA-DNA relatedness between strain Dae08T and its phylogenetically closest neighbour was 28%. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain Dae08T (= KCTC 12600T) should be classified in the genus Lysobacter as the novel species, for which the name Lysobacter daecheongensis sp. nov. is proposed.

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Authors and Affiliations

  1. Department of Biology and Medicinal Science, Pai Chai University, Daejeon, 302-735, Republic of Korea

    Leonid N. Ten & Soon-Ae Yoo

  2. Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 305-701, Republic of Korea

    Hae-Min Jung, Wan-Taek Im & Sung-Taik Lee

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  1. Leonid N. Ten
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  2. Hae-Min Jung
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  3. Wan-Taek Im
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  4. Soon-Ae Yoo
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  5. Sung-Taik Lee
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Correspondence to Wan-Taek Im.

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Ten, L.N., Jung, HM., Im, WT. et al. Lysobacter daecheongensis sp. nov., isolated from sediment of stream near the Daechung dam in South Korea. J Microbiol. 46, 519–524 (2008). https://doi.org/10.1007/s12275-008-0047-9

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