Abstract
Cytochrome c oxidase (COX) represents the main oxygen acceptor for respiration of aerobic organisms. The energy of respiration is stored via oxidative phosphorylation (OxPhos) in ATP, the general energy intermediate in living cells, or released as heat. During evolution from bacteria to mammals the complexity of OxPhos regulation increased at COX by increasing the number of subunits, by expression of subunit isoforms which are specific for tissues, developmental stages, and oxygen concentrations, and by reversible phosphorylation. The essential function of the “supernumerary” subunits became evident in patients with mitochondrial disease related to COX-deficiency, based on mutations in these subunit genes. While the basic regulation of energy transduction in OxPhos was explained by the Mitchell theory, an additional regulation of respiration and ATP synthesis was discovered in eukaryotic organisms, based on reversible and membrane potential-independent inhibition of COX activity at high ATP/ADP ratios. So far, only some of the complex regulatory functions of nuclear-encoded subunits were uncovered.
Similar content being viewed by others
References
Abdulhag UN, Soiferman D, Schueler-Furman O, Miller C, Shaag A, Elpeleg O, Edvardson S, Saada A (2015) Mitochondrial complex IV deficiency, caused by mutated COX6B1, is associated with encephalomyopathy, hydrocephalus and cardiomyopathy. Eur J Hum Genet 23:159–164
Abrahams JP, Leslie AGW, Walker JE (1994) Structure at 2.8 Å resolution of F1-ATPase from bovine heart mitochondria. Nature 370:621–628
Abu-Libdeh B, Douiev L, Amro S, Shahrour M, Ta-Shma A, Miller C, Elpeleg O, Saada A (2017) Mutation in the COX4I1 gene is associated with short stature, poor weight gain and increased chromosomal breaks, simulating Fanconi anemia. Eur J Hum Genet 25(10):1142–1146
Acin-Perez R, Salazar E, Brosel S, Yang H, Schon EA, Manfredi G (2009) Modulation of mitochondrial protein phosphorylation by soluble adenylyl cyclase ameliorates cytochrome oxidase defects. EMBO Mol Med 1:392–406
Acin-Perez R, Gatti DL, Bai Y, Manfredi G (2011) Protein phosphorylation and prevention of cytochrome oxidase inhibition by ATP: coupled mechanisms of energy metabolism regulation. Cell Metab 13(6):712–719
Anthony G, Stroh A, Lottspeich F, Kadenbach B (1990) Different isozymes of cytochrome c oxidase are expressed in bovine smooth muscle and skeletal or heart muscle. FEBS Lett 277:97–100
Arnold S, Kadenbach B (1997) Cell respiration is controlled by ATP, an allosteric inhibitor of cytochrome c oxidase. Eur J Biochem 249:350–354
Arnold S, Kadenbach B (1999) Intramitochondrial ATP/ADP-ratios control cytochrome c oxidase activity allosterically. FEBS Lett 443:105–108
Arnold S, Goglia F, Kadenbach B (1998) 3,5-Diiodothyronine binds to subunit Va of cytochrome c oxidase and abolishes the allosteric inhibition of respiration by ATP. Eur J Biochem 252:325–330
Babcock GT, Wikström M (1992) Oxygen activation and the conservation of energy in cell respiration. Nature 356:301–309
Balaban RS, Nemoto S, Finkel T (2005) Mitochondria, oxidants, and aging. Cell 120(4):483–495
Balsa E, Marco R, Perales-Clemente E, Szklarczyk R, Calvo E, Landázuri MO, Enríquez JA (2012) NDUFA4 is a subunit of complex IV of the mammalian electron transport chain. Cell Metab 16:378–386
Bender E, Kadenbach B (2000) The allosteric ATP-inhibition of cytochrome c oxidase is reversibly switched on by cAMP-dependent phosphorylation. FEBS Lett 466:130–134
Boczonadi V, Giunta M, Lane M, Tulinius M, Schara U, Horvath R (2015) Investigating the role of the physiological isoform switch of cytochrome c oxidase subunits in reversible mitochondrial disease. Int J Biochem Cell Biol 63:32–40
Brand MD (1990) The proton leak across the mitochondrial inner membrane. Biochim Biophys Acta 1018(2–3):128–133
Brand MD (2005) The efficiency and plasticity of mitochondrial energy transduction. Biochem Soc Trans 33(Pt 5):897–904
Brand MD, Nicholls DG (2011) Assessing mitochondrial dysfunction in cells. Biochem J 435(2):297–312
Chance B, Williams CM (1955) Respiratory enzymes in oxidative phosphorylation: III. The steady state. J Biol Chem 217:405–427
Chang FW, Fan HC, Liu JM, Fan TP, Jing J, Yang CL, Hsu RJ (2017) Estrogen enhances the expression of the multidrug transporter gene ABCG2-increasing drug resistance of breast cancer cells through estrogen receptors. Int J Mol Sci 18(1):163
Chen WL, Kuo KT, Chou TY, Chen CL, Wang CH, Wei YH, Wang LS (2012) The role of cytochrome c oxidase subunit Va in non-small cell lung carcinoma cells: association with migration, invasion and prediction of distant metastasis. BMC Cancer 12:273
Chrétien D, Bénit P, Ha HH, Keipert S, El-Khoury R, Chang YT, Jastroch M, Jacobs HT, Rustin P, Rak M (2018) Mitochondria are physiologically maintained at close to 50 °C. PLoS Biol 16(1):e2003992
Costa LE, Reynafarje B, Lehninger AL (1984) Stoichiometry of mitochondrial H+ translocation coupled to succinate oxidation at level flow. J Biol Chem 259:4802–4811
Dalmonte ME, Forte E, Genova ML, Giuffrè A, Sarti P, Lenaz G (2009) Control of respiration by cytochrome c oxidase in intact cells: role of the membrane potential. J Biol Chem 284(47):32331–32335
DiMauro S (2004) Mitochondrial medicine. Biochim Biophys Acta 1659:107–114
DiMauro S, Schon EA (2003) Mitochondrial respiratory-chain diseases. N Engl J Med 348(26):2656–2668
Dobson GP, Himmelreich U (2002) Heart design: free ADP scales with absolute mitochondrial and myofibrillar volumes from mouse to human. Biochim Biophys Acta 1553:261–267
Dröse S, Brandt U (2012) Molecular mechanism of superoxide production by the mitochondrial respiratory chain. Adv Exp Med Biol 748:145–169
Fang JK, Prabu SK, Sepuri NB, Raza H, Anandatheerthavarada HK, Galati D, Spear J, Avadhani NG (2007) Site specific phosphorylation of cytochrome c oxidase subunits I, IVi1 and Vb in rabbit hearts subjected to ischemia/reperfusion. FEBS Lett 581(7):1302–1310
Ferguson-Miller S, Brautigan DL, Margoliash E (1978) Definition of cytochrome c binding domains by chemical modification. III. Kinetics of reaction of carboxydinitrophenyl cytochromes c with cytochrome c oxidase. J Biol Chem 253(1):149–159
Fernandez-Vizarra E, Tiranti V, Zeviani M (2009) Assembly of the oxidative phosphorylation system in humans: what we have learned by studying its defects. Biochim Biophys Acta 1793(1):200–211
Follmann K, Arnold S, Ferguson-Miller S, Kadenbach B (1998) Cytochrome c oxidase activity from eucaryotes but not from procaryotes is allosterically inhibited by ATP. Biochem Mol Biol Int 45:1047–1055
Frank V, Kadenbach B (1996) Regulation of the H +/e− stoichiometry of cytochrome c oxidase from bovine heart by intraliposomal ATP/ADP ratios. FEBS Lett 382:121–124
From AHL, Zimmer SD, Michurski SP, Mohanakrishnan P, Ulstad VK, Thoma WJ, Ugurbil K (1990) Regulation of the oxidative phosphorylation rate in the intact cell. Biochemistry 29:3731–3743
Fukuda R, Zhang H, Kim J, Shimoda L, Dang CV, Semenza GL (2007) HIF-1 regulates cytochrome oxidase subunits to optimize efficiency of respiration in hypoxic cells. Cell 129:111–122
Gao SP, Sun HF, Jiang HL, Li LD, Hu X, Xu XE, Jin W (2015) Loss of COX5B inhibits proliferation and promotes senescence via mitochondrial dysfunction in breast cancer. Oncotarget 6(41):43363–43374
Genova ML, Lenaz G (2014) Functional role of mitochondrial respiratory supercomplexes. Biochim Biophys Acta 1837(4):427–443
Genova ML, Lenaz G (2015) The interplay between respiratory supercomplexes and ROS in aging. Antioxid Redox Signal 23(3):208–238
Ghezzi D, Zeviani M (2012) Assembly factors of human mitochondrial respiratory chain complexes: physiology and pathophysiology. Adv Exp Med Biol 748:65–106
Goldberg A, Wildman DE, Schmidt TR, Huttemann M, Goodman M, Weiss ML, Grossman LI (2003) Adaptive evolution of cytochrome c oxidase subunit VIII in anthropoid primates. Proc Natl Acad Sci USA 100(10):5873–5878
Groen AK, Wanders RJA, Westerhoff HV, van der Meer R, Tager JM (1982) Quantification of the contribution of various steps to the control of mitochondrial respiration. J Biol Chem 257:2754–2757
Hallmann K, Kudin AP, Zsurka G, Kornblum C, Reimann J, Stüve B, Waltz S, Hattingen E, Thiele H, Nürnberg P, Rüb C, Voos W, Kopatz J, Neumann H, Kunz WS (2016) Loss of the smallest subunit of cytochrome c oxidase, COX8A, causes Leigh-like syndrome and epilepsy. Brain 139(Pt 2):338–345
Harman D (1972) The biologic clock: the mitochondria? J Am Geriatr Soc 20:145–147
Hayashi T, Asano Y, Shintani Y, Aoyama H, Kioka H, Tsukamoto O, Hikita M, Shinzawa-Itoh K, Takafuji K, Higo S, Kato H, Yamazaki S, Matsuoka K, Nakano A, Asanuma H, Asakura M, Minamino T, Goto Y, Ogura T, Kitakaze M, Komuro I, Sakata Y, Tsukihara T, Yoshikawa S, Takashima S (2015) Higd1a is a positive regulator of cytochrome c oxidase. Proc Natl Acad Sci USA 112(5):1553–1558
Helling S, Hüttemann M, Ramzan R, Kim SH, Lee I, Müller T, Langenfeld E, Meyer HE, Kadenbach B, Vogt S, Marcus K (2012) Multiple phosphorylations of cytochrome c oxidase and their functions. Proteomics 12:950–959
Herrmann PC, Gillespie JW, Charboneau L, Bichsel VE, Paweletz CP, Calvert VS, Kohn EC, Emmert-Buck MR, Liotta LA, Petricoin EF 3rd (2003) Mitochondrial proteome: altered cytochrome c oxidase subunit levels in prostate cancer. Proteomics 3(9):1801–1810
Horvat S, Beyer C, Arnold S (2006) Effect of hypoxia on the transcription pattern of subunit isoforms and the kinetics of cytochrome c oxidase in cortical astrocytes and cerebellar neurons. J Neurochem 99(3):937–951
Houstis N, Rosen ED, Lander ES (2006) Reactive oxygen species have a causal role in multiple forms of insulin resistance. Nature 440(7086):944–948
Hüttemann M, Kadenbach B, Grossman LI (2001) Mammalian subunit IV isoforms of cytochrome c oxidase. Gene 267:111–123
Hüttemann M, Lee I, Pecinova A, Pecina P, Przyklenk K, Doan JW (2008) Regulation of oxidative phosphorylation, the mitochondrial membrane potential, and their role in human disease. J Bioenerg Biomembr 40:445–456
Hwang HJ, Lynn SG, Vengellur A, Saini Y, Grier EA, Ferguson-Miller SM, LaPres JJ (2015) Hypoxia inducible factors modulate mitochondrial oxygen consumption and transcriptional regulation of nuclear-encoded electron transport chain genes. Biochemistry 54:3739–3748
Ikeda K, Shiba S, Horie-Inoue K, Shimokata K, Inoue S (2013) A stabilizing factor for mitochondrial respiratory supercomplex assembly regulates energy metabolism in muscle. Nat Commun 4:2147
Indrieri A, van Rahden VA, Tiranti V, Morleo M, Iaconis D, Tammaro R, D’Amato I, Conte I, Maystadt I, Demuth S, Zvulunov A, Kutsche K, Zeviani M, Franco B (2012) Mutations in COX7B cause microphthalmia with linear skin lesions, an unconventional mitochondrial disease. Am J Hum Genet 91(5):942–949
Ishigami I, Hikita M, Egawa T, Yeh SR, Rousseau DL (2015) Proton translocation in cytochrome c oxidase: insights from proton exchange kinetics and vibrational spectroscopy. Biochim Biophys Acta 1847(1):98–108
Kadenbach B (2003) Intrinsic and extrinsic uncoupling of oxidative phosphorylation. Biochim Biophys Acta 1604:77–94
Kadenbach B (2017) Regulation of mammalian 13-subunit cytochrome c oxidase and binding of other proteins. Role of NDUFA4. Trends Endocrin Metab 28:761–770
Kadenbach B, Arnold S (1999) A second mechanism of respiratory control. FEBS Lett 447:131–134
Kadenbach B, Hüttemann M (2015) The subunit composition and function of mammalian cytochrome c oxidase. Mitochondrion 24:64–76
Kadenbach B, Ungibauer M, Jarausch J, Büge U, Kuhn-Nentwig L (1983) The complexity of respiratory complexes. Trends Biochem Sci 8:398–400
Kadenbach B, Stroh A, Becker A, Eckerskorn C, Lottspeich F (1990) Tissue- and species-specific expression of cytochrome c oxidase isozymes in vertebrates. Biochim Biophys Acta 1015:368–372
Kadenbach B, Hüttemann M, Arnold S, Lee I, Mühlenbein N, Bender E (2000) Mitochondrial energy metabolism is regulated via nuclear-coded subunits of cytochrome c oxidase. Free Radic Biol Med 29:211–221
Kadenbach B, Ramzan R, Wen L, Vogt S (2010) New extension of the Mitchell theory for oxidative phosphorylation in mitochondria of living organisms. Biochim Biophys Acta 1800:205–212
Kadenbach B, Ramzan R, Vogt S (2013) High efficiency versus maximal performance—the cause of oxidative stress in eukaryotes. A hypothesis. Mitochondrion 13:1–6
Kaim G, Dimroth P (1999) ATP synthesis by F-type ATP synthase is obligatorily dependent on the transmembrane voltage. EMBO J 18:4118–4127
Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, Cheng T, Kho Y, Xiao H, Xiao L, Grishin NV, White M, Yang XJ, Zhao Y (2006) Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Mol Cell 23:607–618
Kim SE, Mori R, Komatsu T, Chiba T, Hayashi H, Park S, Sugawa MD, Dencher NA, Shimokawa I (2015) Upregulation of cytochrome c oxidase subunit 6b1 (Cox6b1) and formation of mitochondrial supercomplexes: implication of Cox6b1 in the effect of calorie restriction. AGE 37:45
Kirichenko A, Vygodina T, Mkrtchyan HM, Konstantinov A (1998) Specific cation binding site in mammalian cytochrome oxidase. FEBS Lett 423(3):329–333
Klingenberg M (2008) The ADP and ATP transport in mitochondria and its carrier. Biochim Biophys Acta 1778:1978–2021
Kocha KM, Reilly K, Porplycia DSM, McDonald J, Snider T, Moyes CD (2015) Evolution of the oxygen sensitivity of cytochrome c oxidase subunit 4. Am J Physiol Regul Integr Comp Physiol 308:R305–R320
Korshunov SS, Skulachev VP, Starkov AA (1997) High protonic potential actuates a mechanism of production of reactive oxygen species in mitochondria. FEBS Lett 416:15–18
Lapuente-Brun E, Moreno-Loshuertos R, Acín-Pérez R, Latorre-Pellicer A, Colás C, Balsa E, Perales-Clemente E, Quirós PM, Calvo E, Rodríguez-Hernández MA, Navas P, Cruz R, Carracedo A, López-Otín C, Pérez-Martos A, Fernández-Silva P, Fernández-Vizarra E, Enríquez JA (2013) Supercomplex assembly determines electron flux in the mitochondrial electron transport chain. Science 340:1567–1571
Lardy HA, Wellman H (1952) Oxidative phosphorylation: role of inorganic phosphate and acceptor systems in control of metabolic rates. J Biol Chem 195:215–224
Lee I, Hüttemann M (2014) Energy crisis: the role of oxidative phosphorylation in acute inflammation and sepsis. Biochim Biophys Acta 1842:1579–1586
Lee I, Kadenbach B (2001) Palmitate decreases proton pumping of liver-type cytochrome c oxidase. Eur J Biochem 268:6329–6334
Lee I, Bender E, Arnold S, Kadenbach B (2001) Minireview-hypothesis. New control of mitochondrial membrane potential and ROS-formation. Biol Chem 382:1629–1633
Lee I, Bender E, Kadenbach B (2002) Control of mitochondrial membrane potential and ROS formation by reversible phosphorylation of cytochrome c oxidase. Mol Cell Biochem 234(235):63–70
Lee I, Salomon AR, Ficarro S, Mathes I, Lottspeich F, Grossman LI, Hüttemann M (2005) cAMP-dependent tyrosine phosphorylation of subunit I inhibits cytochrome c oxidase activity. J Biol Chem 280:6094–6100
Lee SY, Jeon HM, Ju MK, Kim CH, Yoon G, Han SI, Park HG, Kang HS (2012) Wnt/Snail signaling regulates cytochrome c oxidase and glucose metabolism. Cancer Res 72(14):3607–3617
Lenaz G (2001) The mitochondrial production of reactive oxygen species: mechanisms and implications in human pathology. IUBMB Life 52(3–5):159–164
Letts JA, Fiedorczuk K, Sazanov LA (2016) The architecture of respiratory supercomplexes. Nature 537(7622):644–648
Liko I, Degiacomi MT, Mohammed S, Yoshikawa S, Schmidt C, Robinson CV (2016) Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding. Proc Natl Acad Sci USA 113(29):8230–8235
Lincoln AJ, Donat N, Palmer G, Prochaska LJ (2003) Site-specific antibodies against hydrophilic domains of subunit III of bovine heart cytochrome c oxidase affect enzyme function. Arch Biochem Biophys 416(1):81–91
Linder D, Freund R, Kadenbach B (1995) Species-specific expression of cytochrome c oxidase isozymes. Comp Biochem Physiol 112B:461–469
Little AG, Lau G, Mathers KE, Leary SC, Moyes CD (2017) Comparative biochemistry of cytochrome c oxidase in animals. Comp Biochem Physiol B Biochem Mol Biol. https://doi.org/10.1016/j.cbpb.2017.11.005
Liu SS (1997) Generating, partitioning, targeting and functioning of superoxide in mitochondria. Biosci Rep 17:259–272
Ludwig B, Bender E, Arnold S, Hüttemann M, Lee I, Kadenbach B (2001) Cytochrome c oxidase and the regulation of oxidative phosphorylation. ChemBioChem 2:392–403
Marchi S, Pinton P (2014) The mitochondrial calcium uniporter complex: molecular components, structure and physiopathological implications. J Physiol 592(5):829–839
Massa V, Fernandez-Vizarra E, Alshahwan S, Bakhsh E, Goffrini P, Ferrero I, Mereghetti P, D’Adamo P, Gasparini P, Zeviani M (2008) Severe infantile encephalomyopathy caused by a mutation in COX6B1, a nucleus-encoded subunit of cytochrome c oxidase. Am J Hum Genet 82(6):1281–1289
Merle P, Kadenbach B (1980) The subunit composition of mammalian cytochrome c oxidase. Eur J Biochem 105:499–507
Mishra N, Timilsina U, Ghimire D, Dubey RC, Gaur R (2017) Downregulation of cytochrome c oxidase subunit 7A1 expression is important in enhancing cell proliferation in adenocarcinoma cells. Biochem Biophys Res Commun 482(4):713–719
Mitchell P (1961) Coupling of phosphorylation to electron and hydrogen transfer by a chemiosmotic type of mechanism. Nature 191:144–148
Mitchell P (1966) Chemiosmotic coupling in oxidative and photosynthetic phosphorylation. Biol Rev 41:445–502
Murphy MP (2009) How mitochondria produce reactive oxygen species. Biochem J 417(1):1–13
Murphy MP, Brown GC, Brand MD (1985) Thermodynamic limits to the stoichiometry of H + pumping by mitochondrial cytochrome oxidase. FEBS Lett 187:16–20
Napiwotzki J, Kadenbach B (1998) Extramitochondrial ATP/ADP-ratios regulate cytochrome c oxidase activity via binding to the cytosolic domain of subunit IV. Biol Chem 379:335–339
Napiwotzki J, Shinzawa-Itoh K, Yoshikawa S, Kadenbach B (1997) ATP and ADP bind to cytochrome c oxidase and regulate its activity. Biol Chem 378:1013–1021
Nicholls DG (1974) The influence of respiration and ATP hydrolysis on the proton-electrochemical gradient across the inner membrane of rat-liver mitochondria as determined by ion distribution. Eur J Biochem 50:305–315
Nicholls DG, Ferguson SJ (1992) Bioenergetics, 2nd edn. Academic Press Limited, London, pp 82–87
Oliva CR, Markert T, Gillespie GY, Griguer CE (2015) Nuclear-encoded cytochrome c oxidase subunit 4 regulates BMI1 expression and determines proliferative capacity of high-grade gliomas. Oncotarget 6:4330–4344
Palmieri F, Pierri CL (2010) Mitochondrial metabolite transport. Essays Biochem 47:37–52
Pereira MM, Santana M, Teixeira M (2001) A novel scenario for the evolution of haem-copper oxygen reductases. Biochim Biophys Acta 1505:185–208
Pereira-da-Silva L, Sherman M, Lundin M, Baltscheffsky H (1993) Inorganic pyrophosphate gives a membrane potential in yeast mitochondria, as measured with the permeant cation tetraphenylphosphonium. Arch Biochem Biophys 304(2):310–313
Phull AR, Nasir B, Haq IU, Kim SJ (2018) Oxidative stress, consequences and ROS mediated cellular signaling in rheumatoid arthritis. Chem Biol Interact 281:121–136
Planques Y, Capitanio N, Capitanio G, De Nitto E, Villani G, Papa S (1989) Role of supernumerary subunits in mitochondrial cytochrome c oxidase. FEBS Lett 258(2):285–288
Porter RK (2012) Studies on the function and regulation of mitochondrial uncoupling proteins. Adv Exp Med Biol 748:171–184
Potthast AB, Heuer T, Warneke SJ, Das AM (2017) Alterations of sirtuins in mitochondrial cytochrome c-oxidase deficiency. PLoS ONE 12(10):e0186517
Quintens R, Singh S, Lemaire K, De Bock K, Granvik M, Schraenen A, Vroegrijk IO, Costa V, Van Noten P, Lambrechts D, Lehnert S, Van Lommel L, Thorrez L, De Faudeur G, Romijn JA, Shelton JM, Scorrano L, Lijnen HR, Voshol PJ, Carmeliet P, Mammen PP, Schuit F (2013) Mice deficient in the respiratory chain gene Cox6a2 are protected against high-fat diet-induced obesity and insulin resistance. PLoS ONE 8(2):e56719
Radford NB, Wan B, Richman A, Szczepaniak LS, Li J-L, Li K, Pfeiffer K, Schägger D, Garry DJ, Moreadith RW (2002) Cardiac dysfunction in mice lacking cytochrome-c oxidase subunit VIaH. Am J Physiol Heart Circ Physiol 282:H726–H733
Rak M, Bénit P, Chrétien D, Bouchereau J, Schiff M, El-Khoury R, Tzagoloff A, Rustin P (2016) Mitochondrial cytochrome c oxidase deficiency. Clin Sci (Lond) 130(6):393–407
Ramzan R, Staniek K, Kadenbach B, Vogt S (2010) Mitochondrial respiration and membrane potential are regulated by the allosteric ATP-inhibition of cytochrome c oxidase. Biochim Biophys Acta 1797(9):1672–1680
Ramzan R, Weber P, Kadenbach B, Vogt S (2012) Individual biochemical behaviour versus biological robustness: spotlight on the regulation of cytochrome c oxidase. Adv Exp Med Biol 748:265–281
Ramzan R, Schaper AK, Weber P, Rhiel A, Siddiq MS, Vogt S (2017) Mitochondrial cytochrome c oxidase is inhibited by ATP only at very high ATP/ADP ratios. Biol Chem 398(7):737–750
Reynafarje B, Alexandre A, Davies P, Lehninger AL (1982) Proton translocation stoichiometry of cytochrome oxidase: use of a fast-responding oxygen electrode. Proc Natl Acad Sci USA 79:7218–7222
Reynafarje B, Costa LE, Lehninger AL (1986) Upper and lower limits of the proton stoichiometry of cytochrome c oxidation in rat liver mitoplasts. J Biol Chem 261:8254–8262
Rottenberg H, Covian R, Trumpower BL (2009) Membrane potential greatly enhances superoxide generation by the cytochrome bc1 complex reconstituted into phospholipid vesicles. J Biol Chem 284:19203–19210
Rufini A, Niklison-Chirou MV, Inoue S, Tomasini R, Harris IS, Marino A, Federici M, Dinsdale D, Knight RA, Melino G, Mak TW (2012) TAp73 depletion accelerates aging through metabolic dysregulation. Genes Dev 26(18):2009–2014
Sabharwal SS, Schumacker PT (2014) Mitochondrial ROS in cancer: initiators, amplifiers or an Achilles’ heel? Nat Rev Cancer 14(11):709–721
Salje J, Ludwig B, Richter OM (2005) Is a third proton-conducting pathway operative in bacterial cytochrome c oxidase? Biochem Soc Trans 33:829–831
Samavati L, Icksoo Lee I, Mathes I, Lottspeich F, Hüttemann M (2008) Tumor necrosis factor α inhibits oxidative phosphorylation through tyrosine phosphorylation at subunit I of cytochrome c oxidase. J Biol Chem 283:21134–21144
Saraste M, Penttilä T, Wikström M (1981) Quaternary structure of bovine cytochrome oxidase. Eur J Biochem 115(2):261–268
Schiffer TA, Peleli M, Sundqvist ML, Ekblom B, Lundberg JO, Weitzberg E, Larsen FJ (2016) Control of human energy expenditure by cytochrome c oxidase subunit IV-2. Am J Physiol Cell Physiol 311(3):C452–C461
Schlerf A, Droste M, Winter M, Kadenbach B (1988) Characterization of two different genes (cDNA) for cytochrome c oxidase subunit VIa from heart and liver of the rat. EMBO J 7:2387–2391
Schwenke W-D, Soboll S, Seitz HJ, Sies H (1981) Mitochondrial and cytosolic ATP/ADP ratios in rat liver in vivo. Biochem J 200:405–408
Sedlák E, Robinson NC (2015) Destabilization of the quaternary structure of bovine heart cytochrome c oxidase upon removal of tightly bound cardiolipin. Biochemistry 54(36):5569–5577
Semenza GI (2011) Hypoxia-inducible factor 1: regulator of mitochondrial metabolism and mediator of ischemic preconditioning. Biochim Biophys Acta 1813(7):1263–1268
Semenza GL (2017) Hypoxia-inducible factors: coupling glucose metabolism and redox regulation with induction of the breast cancer stem cell phenotype. EMBO J 36(3):252–259
Sepuri NBV, Angireddy R, Srinivasan S, Guha M, Spear J, Lu B, Anandatheerthavarada HK, Suzuki CK, Avadhani NG (2017) Mitochondrial LON protease-dependent degradation of cytochrome c oxidase subunits under hypoxia and myocardial ischemia. BBA Bioenerg 1858:519–528
Setty OH, Shrager RI, Bunow B, Reynafarje B, Lehninger AL, Hendler RW (1986) Direct measurement of the initial proton extrusion to oxygen uptake ratio accompanying succinate oxidation by rat liver mitochondria. Biophys J 50:391–404
Sharma V, Wikström M (2016) The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase. Biochim Biophys Acta 1857(8):1111–1115
Shteyer E, Saada A, Shaag A, Al-Hijawi FA, Kidess R, Revel-Vilk S, Elpeleg O (2009) Exocrine pancreatic insufficiency, dyserythropoeitic anemia, and calvarial hyperostosis are caused by a mutation in the COX4I2 gene. Am J Hum Genet 84(3):412–417
Sinkler CA, Kalpage H, Shay J, Lee I, Malek MH, Grossman LI, Hüttemann M (2017) Tissue- and condition-specific isoforms of mammalian cytochrome c oxidase subunits: from function to human disease. Oxid Med Cell Longev 2017:1534056
Srinivasan S, Avadhani NG (2012) Cytochrome c oxidase dysfunction in oxidative stress. Free Radic Biol Med 53(6):1252–1263
Srinivasan S, Spear J, Chandran K, Joseph J, Kalyanaraman B, Avadhani NG (2013) Oxidative stress induced mitochondrial protein kinase A mediates cytochrome c oxidase dysfunction. PLoS ONE 8(10):e77129
Srivastava S (2017) The mitochondrial basis of aging and age-related disorders. Genes 8(12):398
Steverding D, Kadenbach B (1991) Influence of N-ethoxycarbonyl-2-ethoxy- 1,2-dihydroquinoline modification on proton translocation and membrane potential of reconstituted cytochrome c oxidase support ‘‘proton slippage’’. J Biol Chem 266:8097–8101
Stucki JW (1980) The optimal efficiency and the economic degrees of coupling of oxidative phosphorylation. Eur J Biochem 109:269–283
Sugamura K, Keaney JF Jr (2011) Reactive oxygen species in cardiovascular disease. Free Radic Biol Med 51(5):978–992
Tamiya G, Makino S, Hayashi M, Abe A, Numakura C, Ueki M, Tanaka A, Ito C, Toshimori K, Ogawa N, Terashima T, Maegawa H, Yanagisawa D, Tooyama I, Tada M, Onodera O, Hayasaka K (2014) A mutation of COX6A1 causes a recessive axonal or mixed form of Charcot–Marie–Tooth disease. Am J Hum Genet 95(3):294–300
Terada H (1990) Uncouplers of oxidative phosphorylation. Environ Health Perspect 87:213–218
Timón-Gómez A, Nývltová E, Abriata LA, Vila AJ, Hosler J, Barrientos A (2018) Mitochondrial cytochrome c oxidase biogenesis: recent developments. Semin Cell Dev Biol 76:163–178. https://doi.org/10.1016/j.semcdb.2017.08.055
Tsukihara T, Aoyama H, Yamashita E, Tomizaki T, Yamaguchi H, Shinzawa-Itoh K, Nakashima R, Yaono R, Yoshikawa S (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å. Science 272:1136–1144
van den Bergh S, Slater EC (1960) The respiratory activity and respiratory control of sarcosomes isolated from the thoracic muscle of the housefly. Biochim Biophys Acta 40:176–177
Veech RL, Lawson JWR, Cornell NW, Krebs HA (1979) Cytosolic phosphorylation potential. J Biol Chem 254:6538–6547
Vidoni S, Harbour ME, Guerrero-Castillo S, Signes A, Ding S, Fearnley IM, Taylor RW, Tiranti V, Arnold S, Fernandez-Vizarra E, Zeviani M (2017) MR-1S interacts with PET100 and PET117 in module-based assembly of human cytochrome c oxidase. Cell Rep 18(7):1727–1738
Villani G, Attardi G (1997) In vivo control of respiration by cytochrome c oxidase in wild-type and mitochondrial DNA mutation-carrying human cells. Proc Natl Acad Sci USA 94:1166–1171
Villani G, Greco M, Papa S, Attardi G (1998) Low reserve of cytochrome c oxidase capacity in vivo in the respiratory chain of a variety of human cell types. J Biol Chem 273:31829–31836
Vogt S, Rhiel A, Koch V, Kadenbach B (2007) Regulation of oxidative phosphorylation by inhibition of its enzyme complexes via reversible phosphorylation. Curr Enzyme Inhib 3:189–206
Vondrackova A, Vesela K, Hansikova H, Docekalova DZ, Rozsypalova E, Zeman J, Tesarova M (2012) High-resolution melting analysis of 15 genes in 60 patients with cytochrome-c oxidase deficiency. J Hum Genet 57:442–448
Vygodina TV, Mukhaleva E, Azarkina NV, Konstantinov AA (2017) Cytochrome c oxidase inhibition by calcium at physiological ionic composition of the medium: implications for physiological significance of the effect. Biochim Biophys Acta 1858(12):982–990
Weishaupt A, Kadenbach B (1992) Selective removal of subunit VIb increases the activity of cytochrome c oxidase. Biochemistry 31:11477–11481
Wikström M, Saari HT (1977) The mechanism of energy conservation and transduction by mitochondrial cytochrome c oxidase. Biochim Biophys Acta 462(2):347–361
Wikström M, Krab K, Sharma V (2018) Oxygen activation and energy conservation by cytochrome c oxidase. Chem Rev 118(5):2469–2490. https://doi.org/10.1021/acs.chemrev.7b00664
Woyda-Ploszczyca AM, Jarmuszkiewicz W (2017) The conserved regulation of mitochondrial uncoupling proteins: from unicellular eukaryotes to mammals. Biochim Biophys Acta 1858(1):21–33
Wu M, Gu J, Guo R, Huang Y, Yang M (2016) Structure of mammalian respiratory supercomplex I1III2IV1. Cell 167:1598–1609
Yang WL, Iacono L, Tang WM, Chin KV (1998) Novel function of the regulatory subunit of protein kinase A: regulation of cytochrome c oxidase activity and cytochrome c release. Biochemistry 37:14175–14180
Yoshikawa S (2003) A cytochrome c oxidase proton pumping mechanism that excludes the O2 reduction site. FEBS Lett 555:8–12
Yoshikawa S, Shimada A (2015) Reaction mechanism of cytochrome c oxidase. Chem Rev 115(4):1936–1989
Yoshikawa S, Shinzawa-Itoh K, Nakashima R, Yaono R, Yamashita E, Inoue N, Yao M, Fei MJ, Libeu CP, Mizushima T, Yamaguchi H, Tomizaki T, Tsukihara T (1998) Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase. Science 280:1723–1729
Yoshikawa S, Muramoto K, Shinzawa-Itoh K, Aoyama H, Tsukihara T, Shimokata K, Katayama Y, Shimada H (2006) Proton pumping mechanism of bovine heart cytochrome c oxidase. Biochim Biophys Acta 1757:1110–1116
Yoshikawa S, Muramoto K, Shinzawa-Itoh K (2011) The O(2) reduction and proton pumping gate mechanism of bovine heart cytochrome c oxidase. Biochim Biophys Acta 1807:1279–1286
Zhang K, Wang G, Zhang X, Hüttemann PP, Qiu Y, Liu J, Mitchell A, Lee I, Zhang C, Lee JS, Pecina P, Wu G, Yang ZQ, Hüttemann M, Grossman LI (2016) COX7AR is a stress-inducible mitochondrial COX subunit that promotes breast cancer malignancy. Sci Rep 6:31742
Acknowledgements
Funding was provided by Deutsche Forschungsgemeinschaft.
Author information
Authors and Affiliations
Corresponding author
Additional information
This paper belongs to a series of peer-reviewed contributions coordinated by Guest Editor Ferdinando Palmieri on the theme “Current topics in biology”.
Rights and permissions
About this article
Cite this article
Kadenbach, B. Regulation of mitochondrial respiration and ATP synthesis via cytochrome c oxidase. Rend. Fis. Acc. Lincei 29, 421–435 (2018). https://doi.org/10.1007/s12210-018-0710-y
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12210-018-0710-y