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Association of TOMM40 Polymorphisms with Late-Onset Alzheimer’s Disease in a Northern Han Chinese Population

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Abstract

Mitochondrial dysfunction is an early defect in the pathogenesis of late-onset Alzheimer’s disease (LOAD). One interesting candidate gene for mitochondrial dysfunction in LOAD is the translocase of outer mitochondrial membrane 40 homolog (TOMM40) gene. Several single nucleotide polymorphisms (SNPs) within TOMM40 have been shown to affect susceptibility to LOAD in Caucasians, while there are no studies on the association of the polymorphisms with LOAD risk in Han Chinese. Here, the association of TOMM40 polymorphisms in LOAD was investigated in a large Northern Han Chinese cohort consisting of 1,578 individuals. Both allelic and genotypic associations of three SNPs (rs157580, rs2075650, and rs11556505) with LOAD risk were observed in the total sample as well as in the non- APOE ε4 carriers. For rs1160985, the allele and genotype frequencies differed significantly only in APOE ε4 carriers. After adjustment for age, gender, and APOE ε4 status, the association remained statistically significant only for the rs157580 but not for rs2075650 and rs11556505. In contrast, the rs1160985 exhibited significant risk effect after adjustment. In addition, haplotype analysis confirmed that the haplotypes derived from SNPs in rs2075650, rs11556505, and rs1160985 were associated with either risk or protective effects. In summary, our findings suggest that the TOMM40 polymorphisms may play a role in the pathogenesis of LOAD in Han Chinese.

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References

  • Abramsson, A., Landgren, S., Zetterberg, M., Seibt Palmer, M., Minthon, L., Gustafson, D. R., et al. (2011). No association of LOXL1 gene polymorphisms with Alzheimer’s disease. NeuroMolecular Medicine, 13, 160–166.

    Article  PubMed  CAS  Google Scholar 

  • Babakchanian, S., Hwang, K. S., Coppola, G., Klein, E., Lane, J., Johnson, S., et al. (2011). TOMM40 rs2075650, TOMM40 rs157580 and TOMM40 PolyT Polymorphism Effects on Ventricular Enlargement in Individuals with and without Mild Cognitive Impairment. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, 7, S47.

    Article  Google Scholar 

  • Barrett, J. C., Fry, B., Maller, J., & Daly, M. J. (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263–265.

    Article  PubMed  CAS  Google Scholar 

  • Bekris, L. M., Galloway, N. M., Montine, T. J., Schellenberg, G. D., & Yu, C. E. (2010a). APOE mRNA and protein expression in postmortem brain are modulated byan extended haplotype structure. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 153B, 409–417.

    CAS  Google Scholar 

  • Bekris, L. M., Lutz, F., & Yu, C. E. (2012). Functional analysis of APOE locus genetic variation implicates regional enhancers in the regulation of both TOMM40 and APOE. Journal of Human Genetics, 57, 18–25.

    Article  PubMed  CAS  Google Scholar 

  • Bekris, L. M., Millard, S. P., Galloway, N. M., Vuletic, S., Albers, J. J., Li, G., et al. (2008). Multiple SNPs within and surrounding the apolipoprotein E gene influence cerebrospinal fluid apolipoprotein E protein levels. Journal of Alzheimer’s Disease, 13, 255–266.

    PubMed  CAS  Google Scholar 

  • Bekris, L. M., Yu, C. E., Bird, T. D., & Tsuang, D. W. (2010b). Genetics of Alzheimer disease. Journal of Geriatric Psychiatry and Neurology, 23, 213–227.

    Article  PubMed  Google Scholar 

  • Bruno, D., Pomara, N., Nierenberg, J., Ritchie, J. C., Lutz, M. W., Zetterberg, H., et al. (2012). Levels of cerebrospinal fluid neurofilament light protein in healthy elderly vary as a function of TOMM40 variants. Experimental Gerontology, 47, 347–352.

    Article  PubMed  CAS  Google Scholar 

  • Campion, D., Dumanchin, C., Hannequin, D., Dubois, B., Belliard, S., Puel, M., et al. (1999). Early-onset autosomal dominant Alzheimer disease: prevalence, genetic heterogeneity, and mutation spectrum. American Journal of Human Genetics, 65, 664–670.

    Article  PubMed  CAS  Google Scholar 

  • Carrasquillo, M. M., Zou, F., Pankratz, V. S., Wilcox, S. L., Ma, L., Walker, L. P., et al. (2009). Genetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer’s disease. Nature Genetics, 41, 192–198.

    Article  PubMed  CAS  Google Scholar 

  • Corder, E. H., Saunders, A. M., Strittmatter, W. J., Schmechel, D. E., Gaskell, P. C., Small, G. W., et al. (1993). Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer’s disease in late onset families. Science, 261, 921–923.

    Article  PubMed  CAS  Google Scholar 

  • Cruchaga, C., Nowotny, P., Kauwe, J. S., Ridge, P. G., Mayo, K., Bertelsen, S., et al. (2011). Association and expression analyses with single-nucleotide polymorphisms in TOMM40 in Alzheimer disease. Archives of Neurology, 68, 1013–1019.

    Article  PubMed  Google Scholar 

  • Devi, L., Prabhu, B. M., Galati, D. F., Avadhani, N. G., & Anandatheerthavarada, H. K. (2006). Accumulation of amyloid precursor protein in the mitochondrial import channels of human Alzheimer’s disease brain is associated with mitochondrial dysfunction. The Journal of Neuroscience, 26, 9057–9068.

    Article  PubMed  CAS  Google Scholar 

  • Favis, R., Day, J. P., Gerry, N. P., Phelan, C., Narod, S., & Barany, F. (2000). Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nature Biotechnology, 18, 561–564.

    Article  PubMed  CAS  Google Scholar 

  • Gabriel, S. B., Schaffner, S. F., Nguyen, H., Moore, J. M., Roy, J., Blumenstiel, B., et al. (2002). The structure of haplotype blocks in the human genome. Science, 296, 2225–2229.

    Article  PubMed  CAS  Google Scholar 

  • Gatz, M., Reynolds, C. A., Fratiglioni, L., Johansson, B., Mortimer, J. A., Berg, S., et al. (2006). Role of genes and environments for explaining Alzheimer disease. Archives of General Psychiatry, 63, 168–174.

    Article  PubMed  Google Scholar 

  • Grossman, I., Lutz, M. W., Crenshaw, D. G., Saunders, A. M., Burns, D. K., Roses, A. D., et al. (2010). Alzheimer’s disease: diagnostics, prognostics and the road to prevention. EPMA Journal, 1, 293–303.

    Article  PubMed  Google Scholar 

  • Hansson Petersen, C. A., Alikhani, N., Behbahani, H., Wiehager, B., Pavlov, P. F., Alafuzoff, I., et al. (2008). The amyloid beta-peptide is imported into mitochondria via the TOM import machinery and localized to mitochondrial cristae. Proceedings of the National Academy of Sciences of the United States of America, 105, 13145–13150.

    Article  PubMed  CAS  Google Scholar 

  • Harold, D., Abraham, R., Hollingworth, P., Sims, R., Gerrish, A., Hamshere, M. L., et al. (2009). Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer’s disease. Nature Genetics, 41, 1088–1093.

    Article  PubMed  CAS  Google Scholar 

  • Humphries, A. D., Streimann, I. C., Stojanovski, D., Johnston, A. J., Yano, M., Hoogenraad, N. J., et al. (2005). Dissection of the mitochondrial import and assembly pathway for human Tom40. Journal of Biological Chemistry, 280, 11535–11543.

    Article  PubMed  CAS  Google Scholar 

  • Hwang, K.S., Coppola, G., Johnson, S., Thompson, P.M., Lee, J.J., Ringman, J.M., et al. (2011). Mapping the effects of TOMM40 and APOE4 on hippocampal atrophy in cognitively normal elderly and MCI. Oral presentationAlzheimer’s Disease Imaging Platform Session at the 2011 AAN meeting.

  • Johnson, S. C., La Rue, A., Hermann, B. P., Xu, G., Koscik, R. L., Jonaitis, E. M., et al. (2011). The effect of TOMM40 poly-T length on gray matter volume and cognition in middle-aged persons with APOE ε3/ε3 genotype. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, 7, 456–465.

    Article  CAS  Google Scholar 

  • Kim, S., Swaminathan, S., Shen, L., Risacher, S. L., Nho, K., Foroud, T., et al. (2011). Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort. Neurology, 76, 69–79.

    Article  PubMed  CAS  Google Scholar 

  • Lambert, J. C., Heath, S., Even, G., Campion, D., Sleegers, K., & Hiltunen, M. (2009). Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer’s disease. Nature Genetics, 41, 1094–1099.

    Article  PubMed  CAS  Google Scholar 

  • Ma, X. Y., Yu, J. T., Wu, Z. C., Zhang, Q., Liu, Q. Y., Wang, H. F., et al. (2012). Replication of the MTHFD1L gene association with late-onset Alzheimer’s disease in a Northern Han Chinese population. Journal of Alzheimer’s Disease, 29, 521–525.

    PubMed  Google Scholar 

  • McKhann, G., Drachman, D., Folstein, M., Katzman, R., Price, D., & Stadlan, E. M. (1984). Clinical diagnosis of Alzheimer’s disease: report of the NINCDS-ADRDA Work Group under the auspices of Department of Health and Human Services Task Force on Alzheimer’s Disease. Neurology, 34, 939–944.

    Article  PubMed  CAS  Google Scholar 

  • Naj, A. C., Jun, G., Beecham, G. W., Wang, L. S., Vardarajan, B. N., & Buros, J. (2011). Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer’s disease. Nature Genetics, 43, 436–441.

    Article  PubMed  CAS  Google Scholar 

  • Potkin, S. G., Guffanti, G., Lakatos, A., Turner, J. A., Kruggel, F., Fallon, J. H., et al. (2009). Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer’s disease. PLoS ONE, 4, e6501.

    Article  PubMed  Google Scholar 

  • Roses, A. D., Lutz, M. W., Amrine-Madsen, H., Saunders, A. M., Crenshaw, D. G., Sundseth, S. S., et al. (2010). A TOMM40 variable-length polymorphism predicts the age of late-onset Alzheimer’s disease. Pharmacogenomics Journal, 10, 375–384.

    Article  PubMed  CAS  Google Scholar 

  • Shen, L., Kim, S., Risacher, S. L., Nho, K., Swaminathan, S., West, J. D., et al. (2010). Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort. Neuroimage, 53, 1051–1063.

    Article  PubMed  CAS  Google Scholar 

  • Takei, N., Miyashita, A., Tsukie, T., Arai, H., Asada, T., Imagawa, M., et al. (2009). Genetic association study on in and around the APOE in late-onset Alzheimer disease in Japanese. Genomics, 93, 441–448.

    Article  PubMed  CAS  Google Scholar 

  • Xiao, Z., Xiao, J., Jiang, Y., Zhang, S., Yu, M., Zhao, J., et al. (2006). A novel method based on ligase detection reaction for low abundant YIDD mutants detection in hepatitis B virus. Hepatology Research, 34, 150–155.

    Article  PubMed  CAS  Google Scholar 

  • Yu, J. T., Mao, C. X., Zhang, H. W., Zhang, Q., Wu, Z. C., Yu, N. N., et al. (2011). Genetic association of rs11610206 SNP on chromosome 12q13 with late-onset Alzheimer’s disease in a Han Chinese population. Clinica Chimica Acta, 412, 148–151.

    Article  CAS  Google Scholar 

  • Yu, C. E., Seltman, H., Peskind, E. R., Galloway, N., Zhou, P. X., Rosenthal, E., et al. (2007). Comprehensive analysis of APOE and selected proximate markers for late-onset Alzheimer’s disease: patterns of linkage disequilibrium and disease/marker association. Genomics, 89, 655–665.

    Article  PubMed  CAS  Google Scholar 

  • Zhou, X., Miao, H., Rausch, W. D., Long, M., Luo, X., Yu, H., et al. (2012). Association between apolipoprotein E gene polymorphism and Alzheimer’s disease in Uighur and Han populations. Psychogeriatrics, 12, 83–87.

    Article  PubMed  Google Scholar 

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Acknowledgments

We are grateful to all of the subjects who kindly agreed to participate in this study. This work was supported by grants from the National Natural Science Foundation of China (81000544, 81171209), the Shandong Provincial Natural Science Foundation, China (ZR2010HQ004, ZR2011HZ001), the Medicine and Health Science Technology Development Project of Shandong Province (2011WSA02018, 2011WSA02020), and the Shandong Provincial Outstanding Medical Academic Professional Program.

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Correspondence to Jin-Tai Yu or Lan Tan.

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Ma, XY., Yu, JT., Wang, W. et al. Association of TOMM40 Polymorphisms with Late-Onset Alzheimer’s Disease in a Northern Han Chinese Population. Neuromol Med 15, 279–287 (2013). https://doi.org/10.1007/s12017-012-8217-7

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  • DOI: https://doi.org/10.1007/s12017-012-8217-7

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