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A new adaptive coupled diffusion PDE for MRI Rician noise

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Abstract

Among different methods of image de-noising, partial differential equation (PDE)-based de-noising attracted much attention in the field of medical image processing. The benefit of PDE-based de-noising methods is the ability to smooth image in a nonlinear way, which effectively removes the noise as well as preserving edge through anisotropic diffusion (AD) controlled by the diffusive function. Today, AD filtering such as Perona and Malik (P–M) model is widely used for MR Image enhancement. However, the AD filter is non-optimal for MR images that have Rician noise. Originally, the PDE-based de-noising designed for additive Gaussian distributed noise was signal independent, but the Rician noise was signal dependent. In this paper, we proposed a new adaptive coupled diffusion PDE fitted with MRI Rician noise which not only preserved the edges and fine structures, but also performed efficient de-noising. Our method was an improved version of AADM (automatic parameter selection anisotropic diffusion for MR Images). For this purpose, we have presented a new adaptive method to estimate the standard deviation of noise. As the simulation results showed, our proposed diffusion effectively improved the improved signal-to-noise ratio (ISNR) and preserved edges more than P–M, AADM and unbiased NLM (UNLM—unbiased non-local means) methods to remove Rician noise in MR Images.

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References

  1. Li, B., Que, D.: Medical images denoising based on total variation algorithm. Proc. Environ. Sci. 8, 227–234 (2011)

    Article  Google Scholar 

  2. Catte, F., Lions, P.L., Morel, J.M., Coll, T.: Image selective smoothing and edge detection by nonlinear diffusion. SIAM J. Numer. Anal. 29(1), 182–193 (1992)

    Article  MathSciNet  MATH  Google Scholar 

  3. Perona, P., Malik, J.: Scale-space and edge detection using anisotropic diffusion. IEEE Trans. Pattern Anal. Mach. Intell. 12(7), 629–639 (1990)

    Article  Google Scholar 

  4. Alvarez, L., Lions, P.L., Morel, J.M.: Image selective smoothing and edge detection by nonlinear diffusion. SIAM J. Numer. Anal. 29(3), 845–866 (1992)

    Article  MathSciNet  MATH  Google Scholar 

  5. Rajan, J., Kannan, K., Kaimal, M.R.: An improved hybrid model for molecular image denoising. J. Math. Imaging Vis. 31(1), 73–79 (2008)

    Article  MathSciNet  Google Scholar 

  6. You, Y.L., Kaveh, M.: Fourth order partial differential equations for noise removal. IEEE Trans. Image Process. 9(10), 1723–1730 (2000)

    Article  MathSciNet  MATH  Google Scholar 

  7. Gudbjartsson, H., Patz, S.: The Rician distribution of noisy MRI data. Magn. Reson. Med. 34(6), 910–914 (1995)

    Article  Google Scholar 

  8. Nowak, R.D.: Wavelet-based Rician noise removal for magnetic resonance imaging. IEEE Trans. Image Process. 8(10), 1408–1419 (1999)

    Article  Google Scholar 

  9. Golshan, H., Hasanzadeh, R.: A modified Rician LMMSE estimator for the restoration of magnitude MR images. Optik 124, 2387–2392 (2013)

    Article  Google Scholar 

  10. Fernandez, S.A., Lpez, C.A., Westin, C.F.: Noise and signal estimation in magnitude MRI and Rician distributed images: a LMMSE approach. IEEE Trans. Image Process. 17(8), 1383–1398 (2008)

    Article  MathSciNet  Google Scholar 

  11. Manjon, J.V., et al.: MRI denoising using non-local means. Med. Image Anal. 12, 514–523 (2008)

    Article  Google Scholar 

  12. Manjon, J.V., et al.: Adaptive non-local means denoising of MR images with spatially varying noise levels. J. Magn. Imaging 31(1), 192–203 (2010)

    Article  Google Scholar 

  13. Kim, D.W., Kim, C., Kim, D.H., Lim, D.H.: Rician nonlocal means denoising for MR images using nonparametric principal component analysis. EURASIP J. Image Video Process. 15, 1–8 (2011)

    Google Scholar 

  14. Mohan, J., Krishnaveni, V., Guo, Y.: A survey on the magnetic resonance image denoising methods. Biomed. Signal Process. Control 9, 56–69 (2014)

    Article  Google Scholar 

  15. Bhujle, H.V., Chaudhuri, S.: Laplacian based non-local means denoising of MR images with Rician noise. Magn. Reson. Imaging 31, 1599–1610 (2013)

    Article  Google Scholar 

  16. Krissian, K., Aja-Fernandez, S.: Noise-driven anisotropic diffusion filtering of MRI. IEEE Trans. Image Process. 18(10), 2265–2274 (2009)

    Article  MathSciNet  Google Scholar 

  17. Tong, C., Sun, Y., Payet, N., Ong, S.H.: A general strategy for anisotropic diffusion in MR image denoising and enhancement. Magn. Reson. Imaging 30, 1381–1393 (2012)

    Article  Google Scholar 

  18. Golshan, H., Hasanzadeh, R., Yousefzadeh, S.: An MRI denoising method using image data redundancy and local SNR estimation. Magn. Reson. Imaging 31, 1206–1217 (2013)

    Article  Google Scholar 

  19. Sijbers, J., den Dekker, A.J., Scheunders, P., Van Dyck, D.: Maximum-likelihood estimation of Rician distribution parameters. IEEE Trans. Image Process. 17(3), 357–361 (1998)

    Article  Google Scholar 

  20. Sijbers, J., den Dekker, A.J.: Maximum likelihood estimation of signal amplitude and noise variance from MR data. Magn. Reson. Med. 51(3), 586–594 (2004)

  21. Maximov, I.I., Farrher, E., Grinberg, F., Shah, N.J.: Spatially variable Rician noise in magnetic resonance imaging. Med. Image Anal. 16, 536–548 (2012)

    Article  Google Scholar 

  22. Aelterman, J., Goossens, B., Pizurica, A., hilips, W.P.: Removal of correlated Rician noise in magnetic resonance imaging. In: EUSIPCO (2008)

  23. Sijbers, J., den Dekker, A.J., Van Dyck, D., Raman, E.: Estimation of signal and noise from Rician distributed data. In: Proceedings of the international conference on signal processing and communications pp. 140–142 (1998)

  24. Coupe, P.: An object-based method for Rician noise estimation in MR images. MICCAI 5762, 601–608 (2009)

    Google Scholar 

  25. Coupe, P., et al.: Robust Rician noise estimation for MR images. Med. Image Anal. 14(4), 483–493 (2010)

    Article  Google Scholar 

  26. Koay, C.G., Basser, P.J.: Analytically exact correction scheme for signal extraction from noisy magnitude MR signals. J. Magn. Reson. 179, 317–322 (2006)

    Article  Google Scholar 

  27. Tsiotsios, C., Petrou, M.: On the choice of the parameters for anisotropic diffusion in image processing. Pattern Recogn. 46, 1369–1381 (2013)

    Article  Google Scholar 

  28. Whitacker, R.T., Pizer, S.M.: A multi-scale approach to nonuniform diffusion. CVGIP Image Underst. 57(1), 99–110 (1993)

    Article  Google Scholar 

  29. Li, X., Chen, T.: Nonlinear diffusion with multiple edginess thresholds. Pattern Recogn. 27(8), 1029–1037 (1994)

    Article  Google Scholar 

  30. Ahmed, M.N., et al.: A modified fuzzy c-means algorithm for bias field estimation and segmentation of MRI data. IEEE Trans. Image Process. 21(3), 193–199 (2002)

    Article  Google Scholar 

  31. Wang, Z., Bovik, A.C., Sheikh, H.R., Simoncelli, E.P.: Image quality assessment: from error visibility to structural similarity. IEEE Trans. Image Process. 13, 600–612 (2004)

    Article  Google Scholar 

Download references

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Correspondence to Mohammad-Reza Karami.

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Heydari, M., Karami, MR. & Babakhani, A. A new adaptive coupled diffusion PDE for MRI Rician noise. SIViP 10, 1211–1218 (2016). https://doi.org/10.1007/s11760-016-0878-5

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  • DOI: https://doi.org/10.1007/s11760-016-0878-5

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