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Analysis of genome comparison of two Indian isolates of Cowpea aphid-borne mosaic virus from India

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Abstract

The complete sequence of two Cowpea aphid-borne mosaic virus (CABMV) isolates (RR3 and RR4) from India was determined. Phylogenetic analysis showed that both isolates showed different closeness with other isolates of CABMV. CABMV-RR3 showed maximum identity of 99 % with CABMV-BR1 from Brazil at nucleotide and protein levels, whereas CABMV-RR4 showed identity of 73 and 95 % with CABMV-Z isolate from Zimbabwe at nucleotide and protein levels respectively. Similarity identity matrix revealed 69 % identity at nucleotide level and 91 % at protein level with each other. Recombination breakpoint detection showed that CABMV-MG-Avr from Brazil and CABMV-Z from Zimbabwe act as major parents in our isolates RR3 and RR4, respectively.

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Acknowledgments

The authors are thankful to the Department of Biotechnology, GOI, India (BT/PR14902/BRB/10/889/2010) for financial support.

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Authors and Affiliations

  1. Department of Science, College of Arts, Science and Humanities, Mody University of Science and Technology, Lakshmangarh, Sikar, 332311, Rajasthan, India

    Ritesh Mishra, Rakesh Kumar Verma & Rajarshi Kumar Gaur

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  1. Ritesh Mishra
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  2. Rakesh Kumar Verma
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  3. Rajarshi Kumar Gaur
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Correspondence to Rajarshi Kumar Gaur.

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Edited by Thomas Hohn.

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Mishra, R., Verma, R.K. & Gaur, R.K. Analysis of genome comparison of two Indian isolates of Cowpea aphid-borne mosaic virus from India. Virus Genes 51, 306–309 (2015). https://doi.org/10.1007/s11262-015-1227-4

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  • DOI: https://doi.org/10.1007/s11262-015-1227-4

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