Skip to main content

Advertisement

Log in

Diversity and genetic structure of teak (Tectona grandis L.f) in its natural range using DNA microsatellite markers

  • Published:
New Forests Aims and scope Submit manuscript

Abstract

Teak (Tectona grandis L.f.) is considered to be an extraordinarily durable building timber with a worldwide reputation. Its widespread use has entailed the over-exploitation of natural forests and a large reduction in natural diversity. Fifteen microsatellite markers were used to study the genetic variability and structure of 166 teak trees distributed over the whole natural area of teak. Analysis showed that in the teak natural area there were four main centers of genetic variability. Two clusters were in India and could be considered as main centers of genetic diversity in teak. The third cluster mainly consisting of populations in Thailand and Laos was genetically very distinct from the Indian populations but presented only half as much allelic variability. A fourth cluster from Central Laos showed even less genetic variability. The use of SSR markers for conservation of teak forest diversity is discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Aldrich PR, Hamrick JL, Chavarriaga P et al (1998) Microsatellite analysis of demographic genetic structure in fragmented populations of the tropical tree Symphonia globulifera. Mol Ecol 7:933–944. doi:10.1046/j.1365-294x.1998.00396.x

    Article  PubMed  CAS  Google Scholar 

  • Bagchi SK (1995) Selection differential and predicted genetic gain in Tectona grandis. Indian For 121:482–490

    Google Scholar 

  • Bagchi SK, Sharma VP, Gupta PK (1989) Developmental instability in leaves of Tectona grandis. Silvae Genet 38:1–6

    Google Scholar 

  • Bedell PE (1989) Preliminary observations on variability of teak in India. Indian For 115:72–81

    Google Scholar 

  • Belkhir K, Borsa P, Chikhi L et al (1996–2004) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier (France). Available at http://www.genetix.univ-montp2.fr/genetix/genetix.htm

  • Bendale VW, Naik RY, Mehta JL et al (2005) Variability studies in teak. J Ecobiol 17:29–34

    Google Scholar 

  • Bhat KM, Priya PB (2004) Influence of provenance variation on wood properties of teak from the Western Ghat region in India. Int Assoc Wood Anat J 25:273–282

    Google Scholar 

  • Callen DF, Thompson AD, Shen Y et al (1993) Incidence and origin of “null” alleles in the (AC)n microsatellite markers. Am J Hum Genet 52:922–927

    PubMed  CAS  Google Scholar 

  • Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 32:550–570. doi:10.2307/2406616

    Article  Google Scholar 

  • Dah SE (2003) Sustainable management of teak forests in Myanmar. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 135–142

  • Dah SE (2004) Teak and forest management in Myanmar. ITTO Trop For Update 14:12–13

    Google Scholar 

  • Dieringer D, Schlötterer C (2003) Microsatellite Analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes 3:167–169. doi:10.1046/j.1471-8286.2003.00351.x

    Article  CAS  Google Scholar 

  • Dupuy B, Verhaegen D (1993) Plantation-grown teak (Tectona grandis) in Côte d’Ivoire. Bois For Trop 235:9–24

    Google Scholar 

  • Dutech C, Joly HI, Jarne P (2004) Gene flow, historical population dynamics and genetic diversity within French Guianan populations of a rainforest tree species, Vouacapoua americana. Heredity 92:69–77. doi:10.1038/sj.hdy.6800384

    Article  PubMed  CAS  Google Scholar 

  • El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor Appl Genet 92:832–839. doi:10.1007/BF00221895

    Article  Google Scholar 

  • England PR, Usher AV, Whelan RJ et al (2002) Microsatellite diversity and genetic structure of fragmented populations of the rare, fire-dependent shrub Grevillea macleayana. Mol Ecol 11:967–977. doi:10.1046/j.1365-294X.2002.01500.x

    Article  PubMed  CAS  Google Scholar 

  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620. doi:10.1111/j.1365-294X.2005.02553.x

    Article  PubMed  CAS  Google Scholar 

  • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Department of Genome Sciences, University of Washington, Seattle. Available at http://evolution.genetics.washington.edu/phylip.html

  • Gangopadhyay G, Gangopadhyay SB, Poddar R et al (2003) Micropropagation of Tectona grandis: assessment of genetic fidelity. Biol Plant 46:459–461. doi:10.1023/A:1024359126802

    Article  Google Scholar 

  • Gill BS, Bedi YS, Bir SS (1983) Cytopalynological studies in woody members of family Verbenaceae from north-west and central India. J Indian Bot Soc 62:235–244

    Google Scholar 

  • Goldstein DB, Pollock DD (1997) Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. J Hered 88:335–342

    PubMed  CAS  Google Scholar 

  • Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices. Version 2.9.3. Available from http://www.unil.ch/izea/softwares/fstat.html

  • Graudal L, Kjaer ED, Suangtho V et al (1999) Conservation of genetic resources of Teak (Tectona grandis) in Thailand. Danida Forest Seed Centre, Technical note No 52:1–39

    Google Scholar 

  • Gunaga RP, Vasudeva R (2002) Genetic variation for fruiting phenology among teak clones of different provenances of Karnataka. Indian J For 25:215–220

    Google Scholar 

  • Gunaga RP, Vasudeva R (2003) Causes for low fruit production in clonal seed orchards of Teak (Tectona grandis L.f): a special reference to India. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 352–358

  • Gupta BN, Pattanath PG (1975) Factors affecting germination behaviour of teak seeds of eighteen Indian origins. Indian For 101:584–588

    Google Scholar 

  • Gyi KK, Tint K (1995) Management status of natural teak forests. In: Proceedings of the second regional seminar on teak. Teak for the future. Yangon, Myanmar, 29 May–3 June, pp 27–48

  • Hurlbert SH (1971) The nonconcept of species diversity: a critique and alternative parameters. Ecology 52:577–586. doi:10.2307/1934145

    Article  Google Scholar 

  • Indira EP (2003) Why teak seed orchards are low productive? In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 347–351

  • Isoda K, Watanabe A, Widyatmoko A et al (2000) The simple and reliable management of teak (Tectona grandis) clones with SCAR (Sequence Characterized Amplified Region) marker. In: Proceedings of third regional seminar on teak. Potentials and opportunities in marketing and trade of plantation teak: challenge for the new millennium. Yogyakarta, Indonesia, July 31–August 4, pp 265–269

  • Kaosa-ard A (1986) Teak, Tectona grandis, Linn. f. nursery techniques with special reference to Thailand. In: Centre DFS (ed) Seed Leaflet No 4, Humlebaek Denmark, pp 1–42

  • Kaosa-ard A (1999) Gains from provenance selection. In: Proceedings of international seminar on site, technology and productivity of teak plantations. Chiang Mai, Thailand, 26–29 January, pp 191–207

  • Kaosa-ard A, Suangtho V, Kjaer ED (1998) Experience from tree improvement of teak (Tectona grandis) in Thailand. In: Centre DFS (ed) Technical Note No 5, Humlebaek Denmark, pp 1–14

  • Katwal RPS (2003) Teak in India: status, prospects and perspectives. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 1–22

  • Keiding H, Wellendorf H, Lauridsen EB (1986) Evaluation of an international series of teak provenance trials. Danida Forest Seed Centre, pp 1–81

  • Kelly BA, Hardy OJ, Bouvet J-M (2004) Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali. Mol Ecol 13:1231–1240. doi:10.1111/j.1365-294X.2004.02144.x

    Article  PubMed  CAS  Google Scholar 

  • Kertadikara AWS, Prat D (1995a) Genetic structure and mating system in teak (Tectona grandis L.f.) provenances. Silvae Genet 44:104–110

    Google Scholar 

  • Kertadikara AWS, Prat D (1995b) Isozyme variation among teak (Tectona grandis L.f.) provenances. Theor Appl Genet 90:803–810. doi:10.1007/BF00222015

    Article  CAS  Google Scholar 

  • Kijkar S (2003) Current status of teak in Thailand. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 68–72

  • Kjaer ED, Lauridsen EB (1996) Results from a second evaluation of DFSC coordinated teak (Tectona grandis) provenance trials: has new information been obtained? In: Proceedings of the conference: tree improvement for sustainable tropical forestry. Caloundra, Queensland, Australia, 27 October–1 November, pp 154–157

  • Kjaer ED, Siegismund HR (1996) Allozyme diversity in two Tanzanian and two Nicaraguan landraces of teak (Tectona grandis L.). For Genet 3:45–52

    Google Scholar 

  • Kjaer ED, Siegismund HR, Suangtho V (1996) A multivariate study on genetic variation in teak (Tectona grandis (L.)). Silvae Genet 45:361–368

    Google Scholar 

  • Kjaer ED, Kajornsrichon S, Lauridsen EB (1999) Heartwood, calcium and silica content in five provenances of teak (Tectona grandis L.). Silvae Genet 48:1–3

    Google Scholar 

  • Kjaer E, Amaral W, Yanchuk A et al (2004) Strategies for conservation of forest genetic resources. In: FAO, FLD, IPGRI (eds) Forest genetic resources conservation and management—Overview, concepts and some systematic approaches vol 1, pp 5–24

  • Kumar P (2003) Teak in Karnataka state, India. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 45–46

  • Kyaw NN (2004) The phenotypic characteristics of natural-grown teak in Myanmar. Teaknet Newsl 33:3–5

    Google Scholar 

  • Lowe A, Davies S, Volkaert H et al (2003) Teakdiv—Developing know-how for the improvement and sustainable management of teak genetic resources. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 361–365

  • Mathew J, Vasudeva R (2003) Clonal variation for seed germination in teak (Tectona grandis Linn. f.). Curr Sci 84:1133–1136

    Google Scholar 

  • Nagarajan B, Varghese M, Nicodemus A et al (1996) Reproductive biology of teak and its implication in tree improvement. In: Proceedings of the conference: tree improvement for sustainable tropical forestry. Caloundra, Queensland, Australia, 27 October–1 November, pp 244–248

  • Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583–590

    PubMed  Google Scholar 

  • Newton AC, Allnutt TR, Gillies ACM et al (1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends Ecol Evol 14:140–145. doi:10.1016/S0169-5347(98)01555-9

    Article  PubMed  Google Scholar 

  • Nicodemus A, Nagarajan B, Narayanan C et al (2003) RAPD variation in Indian teak populations and its implications for breeding and conservation. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 321–330

  • Palupi ER, Owens JN (1998) Reproductive phenology and reproductive success of teak (Tectona grandis L. F.). Int J Plant Sci 159:833–842. doi:10.1086/297604

    Article  Google Scholar 

  • Pandey D, Brown C (2000) Le teck dans le monde. Unasylva 201:3–13

    Google Scholar 

  • Parthiban KT, Surendran C, Paramathma M et al (2003) Molecular characterization of teak seed sources using RAPD’s. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 331–337

  • Perrier X, Jacquemoud-Collet JP (2006) DARwin software. Available at http://darwin.cirad.fr/darwin

  • Prabhu N (2003) Teak in Kerala state, India: past, present and future. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 54–62

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959

    PubMed  CAS  Google Scholar 

  • Priya PB, Bhat KM (1998) False ring formation in teak (Tectona grandis L.f.) and the influence of environmental factors. For Ecol Manag 108:215–222

    Article  Google Scholar 

  • Priya PB, Bhat KM (1999) Influence of rainfall, irrigation and age on the growth periodicity and wood structure in teak (Tectona grandis). Int Assoc Wood Anatomists 20:181–192

    Google Scholar 

  • Rao DS, Singh M, Shivaraju B (1991) Teak management in Kerala. In: Proceedings of the international teak symposium. Thiruvananthapuram, Kerala, India, 2–4 December, pp 32–37

  • Rao PS (2003) Status of teak in Andhra Pradesh India. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2–5 December, pp 31–44

  • Rawat MS, Uniyal DP, Sharma SL (1998) Identification of provenances based on leaf morphology in Tectona grandis. Indian For 124:248–251

    Google Scholar 

  • Rice WR (1989) Analysing tables of statistical tests. Evolution 43:223–225. doi:10.2307/2409177

    Article  Google Scholar 

  • Rossetto M, Slade RW, Baverstock PR et al (1999) Microsatellite variation and assessment of genetic structure in tea tree (Melaleuca alternifolia—Myrtaceae). Mol Ecol 8:633–643. doi:10.1046/j.1365-294x.1999.00622.x

    Article  PubMed  CAS  Google Scholar 

  • Rousset F (2008) GENEPOP’007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour 8:103–106. doi:10.1111/j.1471-8286.2007.01931.x

    Article  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    PubMed  CAS  Google Scholar 

  • Shrestha MK, Volkaert H, Van der Straeten D (2005) Assessment of genetic diversity in Tectona grandis using amplified fragment length polymorphism markers. Can J Res 35:1017–1022. doi:10.1139/x05-033

    Article  CAS  Google Scholar 

  • Simatupang MH (2000) Chemical properties of teakwood (Tectona grandis L.f.) as guide for selection of mother trees. In: Proceedings of third regional seminar on teak. Potentials and opportunities in marketing and trade of plantation teak: challenge for the new millennium. Yogyakarta, Indonesia, July 31–August 4, pp 255–264

  • Sivakumar V, Parthiban KT, Singh BG et al (2002) Variability in drupe characters and their relationship on seed germination in teak (Tectona grandis L.f.). Silvae Genet 51:232–237

    Google Scholar 

  • Steffens DL, Sutter SL, Roemer SC (1993) An alternate universal forward primer for improved automated DNA sequencing of M13. Biotechniques 15:580–582

    PubMed  CAS  Google Scholar 

  • Suangtho V, Graudal L, Kjaer ED (1999) Genecological zonation as a tool in conservation of genetic resources of Teak (Tectona grandis) in Thailand. In: Proceedings of the international teak conference: Teak beyond 2000. Chiang Mai, Thailand, 23–25 August, pp 1–8

  • Tangmitcharoen S, Owens JN (1997a) Floral biology, pollination, pistil receptivity, and pollen tube growth of teak (Tectona grandis Linn f.). Ann Bot (Lond) 79:227–241. doi:10.1006/anbo.1996.0317

    Article  Google Scholar 

  • Tangmitcharoen S, Owens JN (1997b) Pollen viability and pollen-tube growth following controlled pollination and their relation to low fruit production in teak (Tectona grandis Linn. f.). Ann Bot (Lond) 80:401–410. doi:10.1006/anbo.1996.0440

    Article  Google Scholar 

  • Tewari DN (1992) A monograph on teak (Tectona grandis Linn. f.). International Book Distributors, Dehra Dun, India

    Google Scholar 

  • Varghese M, Nicodemus A, Ramteke PK et al (2000) Variation in growth and wood traits among nine populations of teak in Peninsular India. Silvae Genet 49:201–205

    Google Scholar 

  • Vasudeva R, Hanumantha M, Gunaga RP (2004) Genetic variation for floral traits among teak (Tectona grandis Linn. f.) clones: implications to seed orchard fertility. Curr Sci 87:358–362

    Google Scholar 

  • Verhaegen D, Ofori D, Fofana I et al (2005) Development and characterization of microsatellite markers in Tectona grandis (Linn. f). Mol Ecol Notes 5:945–947. doi:10.1111/j.1471-8286.2005.01124.x

    Article  CAS  Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370. doi:10.2307/2408641

    Article  Google Scholar 

  • Wright S (1951) The genetical structure of populations. Ann Eugen 15:323–354

    Google Scholar 

  • Wünsch A, Hormazaa JI (2002) Molecular characterisation of sweet cherry (Prunus avium L.) genotypes using peach [Prunus persica (L.) Batsch] SSR sequences. Heredity 89:56–63. doi:10.1038/sj.hdy.6800101

    Article  PubMed  Google Scholar 

Download references

Acknowledgments

We would like to thank the European Commission project “Waft” (Inco-Dev ICA4-CT-2001-10090) which supported this research in Ghana, in Ivory Coast and in the CIRAD BIOS UR 39 laboratory. Many thanks to the Sodefor (Forest Development Society BP 3770 Abidjan 01 Côte d’Ivoire) and Forig (Forestry Research Institute of Ghana UST P.O Box 63 Kumasi Ghana) which supplied the teak plant material. Finally, we thank Claire Billot of CIRAD Bios for having allowed and facilitated access to the sequencer of the molecular biology laboratory, as well as Ronan Rivallan for technical support.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Daniel Verhaegen.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Fofana, I.J., Ofori, D., Poitel, M. et al. Diversity and genetic structure of teak (Tectona grandis L.f) in its natural range using DNA microsatellite markers. New Forests 37, 175–195 (2009). https://doi.org/10.1007/s11056-008-9116-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11056-008-9116-5

Keywords

Navigation