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Meta-QTL analysis of the genetic control of crop height in elite European winter wheat germplasm

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Abstract

In bread wheat (Triticum aestivum L.), crop height is an important determinant of agronomic performance. The aim of this study was to identify genes controlling variation in crop height segregating in elite European winter wheat germplasm. Four doubled haploid populations derived from the crosses Avalon × Cadenza, Savannah × Rialto, Spark × Rialto and Charger × Badger were selected, representing wide diversity in European winter wheat breeding programmes. Genetic maps based on simple sequence repeat (SSR) and Diversity Arrays Technology (DArT) markers were constructed for each population. One hundred and four significant quantitative trait loci (QTL) were identified in the four populations. A meta-analysis was conducted and the effects condensed into sixteen meta-QTL on chromosomes 1A, 1B, 1D, 2A (two meta-QTL), 2B, 2D, 3A, 3B, 4B, 4D, 5A, 5B, 6A, 6B and 6D. These include QTL with additive effects equivalent to Rht-D1 and a potentially new allele of Rht8. The description of these effects offers new opportunities for the manipulation of crop height, biomass and yield in wheat breeding programmes.

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References

  • Ahmed TA, Tsujimoto H, Sasakuma T (2000) QTLs associated with plant height and related characters in hexaploid wheat. Breed Sci 50:267–273

    CAS  Google Scholar 

  • Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J (2004) BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20:2324–2326

    Article  PubMed  CAS  Google Scholar 

  • Bassam BJ, Caetanoanolles G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80–83

    Article  PubMed  CAS  Google Scholar 

  • Basten CJ, Weir BS, Zeng Z-B (1994) Zmap-a QTL cartographer. In: Proceedings of the 5th World Congress on Genetics Applied to Livestock Production: Computing Strategies and Software, vol 22, Guelph, Ontario, Canada, pp 65–66 (Organizing Committee, 5th World Congress on Genetics Applied to Livestock Production)

  • Berry PM, Sterling M, Baker CJ, Spink J, Sparkes DL (2003) A calibrated model of wheat lodging compared with field measurements. Agric For Meteorol 119:167–180

    Article  Google Scholar 

  • Bertin I, Zhu JH, Gale MD (2005) SSCP-SNP in pearl millet—a new marker system for comparative genetics. Theor Appl Genet 110:1467–1472

    Article  PubMed  CAS  Google Scholar 

  • Bezant J, Laurie D, Pratchett N, Chojecki J, Kearsey M (1997) Mapping QTL controlling yield and yield components in a spring barley (Hordeum vulgare L.) cross using marker regression. Mol Breed 3:29–38

    Article  CAS  Google Scholar 

  • Borner A, Worland AJ, Plaschke J, Schumann E, Law CN (1993) Pleiotropic effects of genes for reduced height (Rht) and day-length insensitivity (Ppd) on yield and its components for wheat grown in middle europe. Plant Breed 111:204–216

    Article  Google Scholar 

  • Cadalen T, Sourdille P, Charmet G, Tixier MH, Gay G, Boeuf C, Bernard S, Leroy P, Bernard M (1998) Molecular markers linked to genes affecting plant height in wheat using a doubled-haploid population. Theor Appl Genet 96:933–940

    Article  CAS  Google Scholar 

  • Chapman SC, Mathews KL, Trethowan RM, Singh RP (2007) Relationships between height and yield in near-isogenic spring wheats that contrast for major reduced height genes. Euphytica 157:391–397

    Article  Google Scholar 

  • Darvasi A, Soller M (1997) A simple method to calculate resolving power and confidence interval of QTL map location. Behav Genet 27:125–132

    Article  PubMed  CAS  Google Scholar 

  • Ellis MH, Bonnett DG, Rebetzke GJ (2007) A 192 bp allele at the Xgwm261 locus is not always associated with the Rht8 dwarfing gene in wheat (Triticum aestivum L.). Euphytica 157:209–214

    Article  CAS  Google Scholar 

  • Flintham JE, Borner A, Worland AJ, Gale MD (1997) Optimizing wheat grain yield: effects of Rht (gibberellin-insensitive) dwarfing genes. J Agric Sci 128:11–25

    Article  Google Scholar 

  • Gale MD, Marshall GA (1973) Insensitivity to gibberellin in dwarf wheats. Ann Bot 37:729–735

    CAS  Google Scholar 

  • Griffiths S, Simmonds J, Leverington M, Wang Y, Fish L, Sayers E, Alibert L, Orford S, Wingen L, Herry L, Faure S, Laurie D, Bilham L, Snape J (2009) Meta-QTL analysis of the genetic control of ear emergence in elite European winter wheat germplasm. Theor Appl Genet 119:383–395

    Article  PubMed  CAS  Google Scholar 

  • Kato K, Miura H, Sawada S (1999) QTL mapping of genes controlling ear emergence time and plant height on chromosome 5A of wheat. Theor Appl Genet 98:472–477

    Article  CAS  Google Scholar 

  • Konzak C (1988) Genetic analysis, genetic improvement and evaluation of induced semi-dwarf mutations in wheat. Semi-dwarf cereal mutants and their use in cross-breeding III research coordination meeting, 16–20 December 1985. International Atomic Energy Agency, Vienna, Austria, pp 39–50

  • Korzun V, Roder MS, Ganal MW, Worland AJ, Law CN (1998) Genetic analysis of the dwarfing gene (Rht8) in wheat. Part I. Molecular mapping of Rht8 on the short arm of chromosome 2D of bread wheat (Triticum aestivum L.). Theor Appl Genet 96:1104–1109

    Article  CAS  Google Scholar 

  • Laperche A, Le Gouis J, Hanocq E, Brancourt-Hulmel M (2008) Modelling nitrogen stress with probe genotypes to assess genetic parameters and genetic determinism of winter wheat tolerance to nitrogen constraint. Euphytica 161:259–271

    Article  CAS  Google Scholar 

  • Law CN, Snape JW, Worland AJ (1978) Genetic relationship between height and yield in wheat. Heredity 40:133–151

    Article  Google Scholar 

  • Maccaferri M, Sanguineti MC, Corneti S, Ortega JLA, Ben Salem M, Bort J, DeAmbrogio E, del Moral LFG, Demontis A, El-Ahmed A, Maalouf F, Machlab H, Martos V, Moragues M, Motawaj J, Nachit M, Nserallah N, Ouabbou H, Royo C, Slama A, Tuberosa R (2008) Quantitative trait loci for grain yield and adaptation of durum wheat (Triticum durum Desf.) across a wide range of water availability. Genetics 178:489–511

    Article  PubMed  Google Scholar 

  • Malosetti M, Ribaut JM, Vargas M, Crossa J, vanEeuwijk FA (2008) A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress trials in maize (Zea mays L.). Euphytica 161:241–257

    Article  Google Scholar 

  • McCartney CA, Somers DJ, Humphreys DG, Lukow O, Ames N, Noll J, Cloutier S, McCallum BD (2005) Mapping quantitative trait loci controlling agronomic traits in the spring wheat cross RL4452 × ‘AC Domain’. Genome 48:870–883

    Article  PubMed  CAS  Google Scholar 

  • Quarrie SA, Steed A, Calestani C, Semikhodskii A, Lebreton C, Chinoy C, Steele N, Pljevljakusic D, Waterman E, Weyen J, Schondelmaier J, Habash DZ, Farmer P, Saker L, Clarkson DT, Abugalieva A, Yessimbekova M, Turuspekov Y, Abugalieva S, Tuberosa R, Sanguineti MC, Hollington PA, Aragues R, Royo A, Dodig D (2005) A high-density genetic map of hexaploid wheat (Triticum aestivum L.) from the cross Chinese Spring × SQ1 and its use to compare QTLs for grain yield across a range of environments. Theor Appl Genet 110:865–880

    Article  PubMed  CAS  Google Scholar 

  • Shearman VJ, Sylvester-Bradley R, Scott RK, Foulkes MJ (2005) Physiological processes associated with wheat yield progress in the UK. Crop Sci 45:175–185

    Google Scholar 

  • Snape JW, Law CN, Worland AJ (1977) Whole chromosome analysis of height in wheat. Heredity 38:25–36

    Article  Google Scholar 

  • Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109:1105–1114

    Article  PubMed  CAS  Google Scholar 

  • Sourdille P, Cadalen T, Guyomarc’h H, Snape JW, Perretant MR, Charmet G, Boeuf C, Bernard S, Bernard M (2003) An update of the Courtot × Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat. Theor Appl Genet 106:530–538

    PubMed  CAS  Google Scholar 

  • Stam P (1993) Construction of integrated genetic-linkage maps by means of a new computer package—joinmap. Plant J 3:739–744

    Article  CAS  Google Scholar 

  • Wenzl P, Carling J, Kudrna D, Jaccoud D, Huttner E, Kleinhofs A, Kilian A (2004) Diversity Arrays Technology (DArT) for whole-genome profiling of barley. Proc Natl Acad Sci US A 101:9915–9920

    Article  CAS  Google Scholar 

  • Zhang ZH, Li P, Wang LX, Hu ZL, Zhu LH, Zhu YG (2004) Genetic dissection of the relationships of biomass production and partitioning with yield and yield related traits in rice. Plant Sci 167:1–8

    Article  CAS  Google Scholar 

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Authors and Affiliations

  1. Crop Genetics, John Innes Centre, Norwich Research Park, Colney, Norwich, NR4 7UH, UK

    Simon Griffiths, James Simmonds, Michelle Leverington, Yingkun Wang, Lesley Fish, Liz Sayers, Leodie Alibert, Simon Orford, Luzie Wingen & John Snape

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  1. Simon Griffiths
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  2. James Simmonds
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  3. Michelle Leverington
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  4. Yingkun Wang
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  5. Lesley Fish
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  6. Liz Sayers
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  7. Leodie Alibert
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  8. Simon Orford
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  9. Luzie Wingen
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  10. John Snape
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Correspondence to Simon Griffiths.

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Griffiths, S., Simmonds, J., Leverington, M. et al. Meta-QTL analysis of the genetic control of crop height in elite European winter wheat germplasm. Mol Breeding 29, 159–171 (2012). https://doi.org/10.1007/s11032-010-9534-x

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  • DOI: https://doi.org/10.1007/s11032-010-9534-x

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