Abstract
Resistance to Fusarium head blight (FHB) is of great importance in wheat breeding programs in the northern hemisphere. In Europe, breeders prefer adapted germplasm as resistance donor because of high grain yield and quality demands. Our objective was to identify chromosomal regions affecting FHB resistance among 455 European soft winter wheat (Triticum aestivum L.) lines using a genome-wide association mapping approach and to analyze the importance of epistatic interactions. All entries were evaluated for FHB resistance by inoculation in two environments and several ratings. Wheat was genotyped by 115 simple sequence repeat markers randomly distributed across the genome and two allele-specific markers for Rht-B1 and Rht-D1 genes. The genome-wide scan revealed nine significant (P < 0.05) marker–phenotype associations on seven chromosomes including dwarfing gene Rht-D1. Using a Bonferroni–Holm correction, three significant associations remained on chromosomes 1B, 1D, and 2D. The proportion of the genotypic variance explained simultaneously by individual markers was 36% and increased to 50% when two digenic epistatic interactions were considered, one of them associated with Rht-B1. In conclusion, new genomic regions on chromosomes 1D and 3A could be found for FHB resistance in European wheat and the effect of epistatic interactions was substantial.
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Anderson JA, Stack R, Liu S, Waldron BL, Fjeld AD, Coyne C, Moreno-Sevilla B, Fetch JM, Song QJ, Cregan PB, Frohberg RC (2001) DNA markers for Fusarium head blight resistance QTLs in two wheat populations. Theor Appl Genet 102:1164–1168. doi:10.1007/s001220000509
Anonymous (2005) COMMISSION REGULATION (EC) No 856/2005 of 6 June 2005 amending Regulation (EC) No 466/2001 as regards Fusarium toxins. Off J Eur Union L143:3–8
Anonymous (2008) COMMISSION REGULATION (EC) No 33/2008 of 17 January 2008 laying down detailed rules for the application of Council Directive 91/414/EEC as regards a regular and an accelerated procedure for the assessment of active substances which were part of the programme of work referred to in Article 8(2) of that Directive but have not been included into its Annex I. Off J Eur Union L15:5–12
Bernardo R (1993) Estimation of coefficient of coancestry using molecular markers in maize. Theor Appl Genet 85:1055–1062
Bürstmayr H, Steiner B, Hartl L, Griesser M, Angerer N, Lengauer D, Miedaner T, Schneider B, Lemmens M (2003) Molecular mapping of QTLs for Fusarium head blight resistance in spring wheat. II. Resistance to fungal penetration and spread. Theor Appl Genet 107:503–508. doi:10.1007/s00122-003-1272-6
Bürstmayr H, Ban T, Anderson JA (2009) QTL mapping and marker-assisted selection for Fusarium head blight resistance in wheat: a review. Plant Breed 128:1–26. doi:10.1111/j.1439-0523.2008.01550.x
Draeger R, Gosman N, Steed A, Chandler E, Thomsett M, Srinivasachary SchondelmaierJ, Bürstmayr H, Lemmens M, Schmolke M, Mesterhazy A, Nicholson P (2007) Identification of QTLs for resistance to Fusarium head blight, DON accumulation, and associated traits in the winter wheat variety Arina. Theor Appl Genet 115:617–625
Ellis MH, Spielmeyer W, Gale KR, Rebetzke GJ, Richards RA (2002) “Perfect” markers for the Rht-B1b and Rht-D1b dwarfing genes in wheat. Theor Appl Genet 105:1038–1042
FAOSTAT (2010) Internet resource: http://faostat.fao.org/site/567/default.aspx#ancor (verified 14 May 2010)
Flint-Garcia SA, Thornsberry JM, Buckler ES (2003) Structure of linkage disequilibrium in plants. Annu Rev Plant Biol 54:357–374
Gilmour AR, Gogel BJ, Cullis BR, Thompson R (2006) ASReml user guide release 2.0 VSN International Ltd, Hermel Hempstead
Goswami RS, Kistler HC (2004) Heading for disaster: Fusarium graminearum on cereal crops. Mol Plant Pathol 5:515–525
Gower JC (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53:325–338
Häberle J, Holzapfel J, Schweizer G, Hartl L (2009) A major QTL for resistance against Fusarium head blight in European winter wheat. Theor Appl Genet 199:325–332
Holm S (1979) A simple sequentially rejective multiple test procedure. Scand J Stat 6:65–70
Holzapfel J, Voss H-H, Miedaner T, Korzun V, Häberle J, Schweizer G, Mohler V, Zimmermann G, Hartl L (2008) Inheritance of resistance to Fusarium head blight in three European winter wheat populations. Theor Appl Genet 117:1119–1128
Klahr A, Zimmermann G, Wenzel G, Mohler V (2007) Effects of environment, disease progress, plant height and heading date on the detection of QTLs for resistance to Fusarium head blight in an European winter wheat cross. Euphytica 154:17–28. doi:10.1007/s10681-006-9264-7
Knopf C, Becker H, Ebmeyer E, Korzun V (2008) Occurrence of three dwarfing Rht genes in German winter wheat varieties. Cereal Res Commun 36:553–560. doi:10.1556/CRC.36.2008.4.4
Liu S, Zhang X, Pumphrey MO, Stack RW, Gill BS, Anderson JA (2006) Complex microcolinearity among wheat, rice, and barley revealed by fine mapping of the genomic region harboring a major QTL for resistance to Fusarium head blight in wheat. Funct Integr Genomics 6:83–89. doi:10.1007/s10142-005-0007-y
Löffler M, Schön CC, Miedaner T (2009) Revealing the genetic architecture of FHB resistance in hexaploid wheat (Triticum aestivum L.) by QTL meta-analysis. Mol Breed 23:473–488
Ma HX, Bai GH, Zhang X, Lu WZ (2006) Main effects, epistasis, and environmental interactions of quantitative trait loci for Fusarium head blight resistance in a recombinant inbred population. Phytopathology 96:534–541
Melchinger AE, Utz HF, Schön CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and larger bias in estimates of QTL effects. Genetics 149:383–403
Miedaner T, Voss H-H (2008) Effect of dwarfing Rht genes on Fusarium head blight resistance in two sets of near-isogenic lines of wheat and check cultivars. Crop Sci 48:2115–2122
Miedaner T, Gang G, Geiger HH (1996) Quantitative-genetic basis of aggressiveness of 42 isolates of Fusarium culmorum for winter rye head blight. Plant Dis 80:500–504
Paul PA, McMullen MP, Hershman DE, Madden LV (2010) Meta-analysis of the effects of triazole-based fungicides on wheat yield and test weight as influenced by Fusarium head blight intensity. Phytopathology 100:160–171. doi:10.1094/PHYTO-100-2-0160
Reif JC, Hallauer AR, Melchinger AE (2005) Heterosis and heterotic patterns in maize. Maydica 50:215–223
Reif JC, Maurer HP, Korzun V, Ebmeyer E, Miedaner T, Würschum T (2010) Genetic architecture of grain yield and heading time in soft winter wheat. Genetics (in review)
Schmolke M, Zimmermann G, Bürstmayr H, Schweizer G, Miedaner T, Korzun V, Ebmeyer E, Hartl L (2005) Molecular mapping of Fusarium head blight resistance in the winter wheat population Dream/Lynx. Theor Appl Genet 111:747–756
Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109:1105–1114
Stich B, Möhring J, Piepho HP, Heckenberger M, Buckler ES, Melchinger AE (2008) Comparison of mixed-model approaches for association mapping. Genetics 178:1745–1754
Utz HF, Melchinger AE, Schön CC (2000) Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154:1839–1849
Veyrieras J-B, Camus-Kulandaivelu L, Gouesnard B, Manicacci B, Charcosset A (2007) Bridging genomics and genetic diversity: linkage disequilibrium structure and association mapping in maize and other cereals. Crop Sci 47:60–71
Waldron BL, Moreno-Sevilla B, Anderson JA, Stack RW, Frohberg RC (1999) RFLP mapping of QTL for Fusarium head blight resistance in wheat. Crop Sci 39:805–811
Wright S (1978) Evolution and genetics of populations. Variability within and among natural populations, vol 4. The University of Chicago Press, Chicago, p 91
Zadoks JC, Chang TT, Kunzak CF (1974) Decimal code for growth stages of cereals. Weed Res 15:415–421
Zwart RS, Muylle H, Van Bockstaele E, Roldán-Ruiz I (2008) Evaluation of genetic diversity of Fusarium head blight resistance in European winter wheat. Theor Appl Genet 117:813–828
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This research was conducted within the Biometric and Bioinformatic Tools for Genomics-based Plant Breeding project supported by the German Federal Ministry of Education and Research (BMBF) within the framework of GABI–FUTURE Initiative.
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Miedaner, T., Würschum, T., Maurer, H.P. et al. Association mapping for Fusarium head blight resistance in European soft winter wheat. Mol Breeding 28, 647–655 (2011). https://doi.org/10.1007/s11032-010-9516-z
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DOI: https://doi.org/10.1007/s11032-010-9516-z