Abstract
Annual (Lolium multiflorum Lam.) and perennial (Lolium perenne L.) ryegrasses are two important forage and turfgrass species. Improving the digestibility of forage by decreasing fiber content is a major goal in forage crop breeding programs. An annual × perennial ryegrass interspecific hybrid population was used to map quantitative trait loci (QTLs) for fiber components, neutral detergent fiber (NDF), acid detergent fiber (ADF), and acid detergent lignin (ADL), and crude protein (CP). Samples were harvested three times in August and September 2003 and August 2004, respectively. Simple interval mapping was used to detect QTLs from both the male and female parental maps previously developed for the population. Fiber components were all correlated positively with each other and were negatively correlated with CP. The largest correlations were between NDF and ADF with r = 0.86, 0.72, and 0.82 for each of the three harvests. All four traits showed intermediate broad-sense heritability values ranging from 0.35 to 0.72. A total of 63 QTLs were detected for the four traits measured over the three harvests from both the female and male maps. Coincident QTLs were detected on linkage groups (LGs) 2, 6, and 7 for NDF, LGs 1, 2, and 7 for ADF, LGs 6 and 7 for ADL, and LG 2 for CP, respectively. Coincident QTLs were also detected on LGs 2, 6, and 7 for NDF and ADF, providing evidence of the genetic basis of the observed high level of phenotypic correlation. The QTLs on LGs 2, 6, and possibly 7 for fiber components were co-located on the same LG as several lignin biosynthetic genes from perennial ryegrass.
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Abbreviations
- ADF:
-
Acid detergent fiber
- ADL:
-
Acid detergent lignin
- CP:
-
Crude protein
- LG:
-
Linkage group
- NDF:
-
Neutral detergent fiber
- QTLs:
-
Quantitative trait loci
References
Cardinal AJ, Lee M, Moore KJ (2003). Genetic mapping and analysis of quantitative trait loci affecting fiber and lignin content in maize. Theor Appl Genet 106:866–874
Casler MD (2001) Breeding forage crops for increased nutritive value. Adv Agron 71:51–107
Cogan NOI, Smith KF, Yamada T, Francki MG, Vecchies AC, Jones ES, Spangenberg GC, Forster JW (2005) QTL analysis and comparative genomics of herbage quality traits in perennial ryegrass (Lolium perenne L.). Theor Appl Genet 110:364–380
Cogan NOI, Ponting RC, Vecchies AC, Drayton MC, George J, Dobrowolski MP, Sawbridge TI, Spangenberg GC, Smith KF, Forster JW (2006) Gene-associated single nucleotide polymorphism (SNP) discovery in perennial ryegrass (Lolium perenne L.). Mol Gen Genomics DOI: 10.1007/s00438-006-0126-8
Curley J, Sim SC, Warnke S, Leong S, Barker R, Jung G (2005) QTL mapping of resistance to gray leaf spot in ryegrass. Theor Appl Genet 111:1107–1117
de Boever JL, Cottyn FX, Wainman FW, Vanacker JM (1986) The use of an enzymatic technique to predict digestibility, metabolisable and net energy of compound feedstuffs for ruminants. Anim Feed Sci Technol 14:203–214
Faville M, Vecchies AC, Schreiber M, Drayton MC, Hughes LJ, Jones ES, Guthridge KM, Smith KF, Sawbridge T, Spangenberg GC, Bryan GT, Forster JW (2004) Functionally-associated molecular genetic marker map construction in perennial ryegrass (Lolium perenne L.). Theor Appl Genet 110:12–32
Gavlak RG, Horneck DA, Miller RO (1994) Plant, soil, and water reference methods for the western region. Western region extension publication 125
Heath R, Huxley H, Stone B, Spangenberg G (1998) cDNA cloning and differential expression of three caffeic acid O-methyltransferase homologues from perennial ryegrass (Loliumperenne L.). J Plant Physiol 153:649–657
Jones ES, Dupal MD, Dumsday JL, Hughes LJ, Forster JW (2002a) An SSR-based genetic linkage map for␣perennial ryegrass. Theor Appl Genet 105:577– 584
Jones ES, Mahoney NL, Hayward MD, Armstead LP, Jones JG, Humphreys MO, King LP, Kishida T, Yamada T, Balfourier F, Charmet G, Forster JW (2002b) An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes. Genome 45:282–295
Lu C, Shen L, Tan Z, Xu Y, He P, Chen Y, Zhu L (1996) Comparative mapping of QTL for agronomic traits in rice across environments using a doubled haploid population. Theor Appl Genet 93:1211–1217
Lübberstedt T, Melchinger EA, Klein D, Degenhardt H, Paul C (1997) QTL mapping in testcrosses of flint lines of maize: II. Comparison of different testers for forage quality traits. Crop Sci 37:1913–1922
Lübberstedt T, Melchinger EA, Fahr S, Klein D, Dally A, Westhoff P (1998) QTL mapping in testcrosses of flint lines of maize: III. Comparison across populations for forage traits. Crop Sci 38:1278–1289
Lundvall JP, Buxton DR, Hallauer AR, George JR (1994) Forage quality variation among maize inbreds: in vitro digestibility and cell-wall components. Crop Sci 34:1671–1678
Lynch D, Lidgett A, McInnes R, Huxley H, Jones E, Mahoney N, Spangenberg G (2002) Isolation and characterisation of three cinnamyl alcohol dehydrogenase homologue cDNAs from perennial ryegrass (Lolium perenne L.). J Plant Physiol 159:653–660
McCouch SR, Cho YG, Yano M, Paul E, Blinstrub M (1997) Report on QTL nomenclature. Rice Genet Newslett 14:11–13
McInnes R, Lidgett A, Lynch D, Huxley H, Jones E, Mahoney N, Spangenberg G (2002) Isolation and characterisation of a cinnamoyl-CoA reductase gene from perennial ryegrass (Lolium perenne). J Plant Physiol 159:415–422
Méchin V, Argillier O, Hébert Y, Guingo E, Moreau L, Charcosset A, Barrière Y (2001) Genetic analysis and QTL mapping of cell wall digestibility and lignification in silage maize. Crop Sci 41:690–697
Menke KH, Raab L, Salewski A, Steingass H, Fritz D, Schneider W (1979) The estimation of the digestibility and metabolisable energy content of ruminant feeding stuffs from the gas production when they are incubated with rumen liquor in vitro. J Agric Sci (Camb) 93:217–222
Moore KJ, Hatfield RD (1994) Carbohydrates and forage quality. In: Fahey GC Jr (ed) Forage quality, evaluation, and utilization. ASA-CSSA-SSSA, Madison, pp 229–280
Roberts CA, Workman J, Reeves JB III (2004) Near-infrared spectroscopy in agriculture. ASA-CSSA-SSSA, Inc., Madison WI
SAS Institute (2000) SAS language and procedure: usage. Version 8, 1st edn. SAS Inst
Shenk JS, Westerhaus MO (1991a) Population definition, sample selection, and calibration procedures for near infrared reflectance spectroscopy. Crop Sci 31:469–474
Shenk JS, Westerhaus MO (1991b) Population structuring of near infrared spectra and modified least squares regression. Crop Sci 31:1548–1555
Sim S, Chang T, Curley J, Warnke SE, Barker RE, Jung G (2005) Chromosomal rearrangements differentiating the ryegrass genome from the Triticeae, oat, and rice genomes using common heterologous RFLP probes. Theor Appl Genet 110:1011–1019
Tilly JMA, Terry RA (1963) A two-stage technique for the in vitro digestion of forage crops. J Br Grassl Soc 18:104–111
Van Ooijen JW, Voorrips RE (2001) JoinMap® 3.0: software for the calculation of genetic linkage maps. Plant Research International, Wageningen
Van Ooijen JW, Boer MP, Jansen RC, Maliepaard C (2002) MapQTL® version 4.0: software for the calculation of QTL positions on genetic maps. Plant Research International, Wageningen
Van Soest PJ (1963) Use of detergents in the analysis of fibrous feeds. J Assoc Offic Agric Chem 46:825–835
Van Soest PJ, Robertson JB, Lewis BA (1991) Symposium: carbohydrate methodology, metabolism, and nutritional implications in dairy cattle. J Dairy Sci 74:3583–3597
Vogel KP, Pedersen JF, Masterson SD, Toy JJ (1999) Evaluation of a filter bag system for NDF, ADF, IVDMD forage analysis. Crop Sci 39:276–279
Warnke SE, Baker RE, Jung G, Sim SC, Rouf Mian MA, Saha MC, Brilmam LA, Dupal MP, Forster JW (2004) Genetic linkage mapping of an annual × perennial ryegrass population. Theor Appl Genet 109:294–304
Wolf DR, Coors JG, Albrecht KA, Undersander DJ, Carter PR (1993) Forage quality of maize genotypes selected for extreme fiber concentrations. Crop Sci 33:1353–1359
Yadav RS, Bidinger FR, Hash CT, Yadav YP, Yadav OP, Bhatnagar SK, Howarth CJ (2003) Mapping and characterisation of QTL × E interactions for traits determining grain and stover yield in pearl millet. Theor Appl Genet 106:512–520
Acknowledgements
We wish to thank Dr. Mike Casler for critically reading the manuscript. We also express our appreciation to Trish Patrick for technical assistance in laboratory analyses of forage quality traits, and to Lori Evans for technical assistance in maintaining the plants in the greenhouse.
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Xiong, Y., Fei, Sz., Brummer, E.C. et al. QTL analyses of fiber components and crude protein in an annual × perennial ryegrass interspecific hybrid population. Mol Breeding 18, 327–340 (2006). https://doi.org/10.1007/s11032-006-9034-1
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DOI: https://doi.org/10.1007/s11032-006-9034-1