Skip to main content

Advertisement

Log in

A novel simple QSAR model for the prediction of anti-HIV activity using multiple linear regression analysis

  • Full-Length Paper
  • Published:
Molecular Diversity Aims and scope Submit manuscript

Summary

A quantitative–structure activity relationship was obtained by applying Multiple Linear Regression Analysis to a series of 80 1-[2-hydroxyethoxy-methyl]-6-(phenylthio) thymine (HEPT) derivatives with significant anti-HIV activity. For the selection of the best among 37 different descriptors, the Elimination Selection Stepwise Regression Method (ES-SWR) was utilized. The resulting QSAR model (R 2 CV = 0.8160; S PRESS = 0.5680) proved to be very accurate both in training and predictive stages.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Hansh, C. and Leo, A. Exploring QSAR. Fundamentals and Applications in Chemistry and Biology. American Chemical Society. Washington, DC, 1995.

    Google Scholar 

  2. Miyasaka, T., Tanaka, H., Baba, M., Hayakawa, H., Walker, R., Balzarini, J. and Clercq, E. A novel lead for specific anti-HIV-1 agents: 1-[(2-hydroxyethoxy)methyl]-6-(phenylthio)thymine. J. Med. Chem., 32 (1989) 2507–2509.

    Article  PubMed  CAS  Google Scholar 

  3. Hansch, C. and Zhang, L. Bioorg. QSAR of HIV inhibitors. Med. Chem. Lett., 2 (1992) 1165–1169.

    Article  CAS  Google Scholar 

  4. Hannongbua, S., Lawtrakul, L. and Limtrakul, J. Structure –Activity Correlation Study of HIV-1 Inhibitors. Electron and Molecular Parameters. J. Comput. –Aided Mol. Des., 10 (1996) 145–152.

    Article  PubMed  CAS  Google Scholar 

  5. Tanaka, H., Takashima, H., Ubasawa, M., Sekiya, K., Nitta, I., Baba, M., Shigeta, Sh., Walker, R.T. De Clercq, E., Miyasaka, T. Synthesis and Antiviral Activity of 6-Benzyl Analogs of 1-[(2-Hydroxyethoxy)-methyl]-6-(phenylthio)thymine (HEPT) as Potent and Selective Anti-HIV-1 Agents. J. Med. Chem., 35 (1992) 4713–4719.

    Article  PubMed  CAS  Google Scholar 

  6. Luco, J.M. and Ferreti F.H. QSAR Based on Multiple Linear Regression and PLS Methods for the Anti-HIV Activity of a Large Group of HEPT Derivatives. J. Chem. Inf. Comput. Sci., 37 (1997) 392–401.

    Article  PubMed  CAS  Google Scholar 

  7. Jalali-Heravi., M. and Parastar., F. J. Use of Artificial Neural Networks in a QSAR Study of Anti-HIV Activity for a Large Group of HEPT Derivatives, Chem. Inf. Sci., 40 (2000), 147–154.

    Article  CAS  Google Scholar 

  8. Alves, C. N., Pinheiro, J. C. Camargo, A. J., Ferreira, M. M. C. and Silva, A. B. F. A structure –activity relationship study of HEPT –analog compound with anti –HIV activity. Journal of Molecular Structure (Theochem), 530 (2000) 39–47.

    Article  CAS  Google Scholar 

  9. Bazoui, H., Zahouily, M., Boulajaaj, S., Sebti, S. and Zakarya, D. QSAR for anti-HIV activity of HEPT derivatives. SAR and QSAR in Environmental Research, 13 (2002) 567–577.

    Article  PubMed  CAS  Google Scholar 

  10. Duali, L., Villemin, D. and Cherqaoui, D., Neural Networks : Accurate Nonlinear QSAR Model for HEPT Derivatives, J. Chem. Inf. Comput. Sci., 43 (2003) 1200–1207.

    Article  Google Scholar 

  11. Duali, L., Villemin, D. and Cherqaoui, D., Comparative QSAR based on neural networks for the anti-HIV activity of HEPT derivatives. Curr. Pharm. Des., 9 (2003) 1817–1826.

    Article  Google Scholar 

  12. Duali, L., Villemin, D., Zyad, A. and Cherqaoui, D., Artificial neural networks: non-linear QSAR studies of HEPT derivatives as HIV-1 reserve transcriptase inhibitors. Molecular Diversity, 8 (2004) 1–8.

    Article  Google Scholar 

  13. Gupta, S., Singh, M. and Madam, A. K., Predicting anti-HIV activity: computational approach using a novel topological descriptor. J. Comput. Aided Mol. Des., 15 (2001) 671–678.

    Article  PubMed  CAS  Google Scholar 

  14. Gayen, S., Debnath, B., Samanta, S. and Jha, T., QSAR study on some anti-HIV HEPT analogues using physicochemical and topological parameters. Bioorganic & Medicinal Chemistry, 12 (2004) 1493–1503.

    Article  CAS  Google Scholar 

  15. Efroymson, M. A., Multiple Regression Analysis, in: Ralston, A. and Wilf, H.S. (eds.), Mathematical Methods for Digital Computers, Wiley, New York, NY, 1960.

    Google Scholar 

  16. Osten, D. W. Selection of Oprimal Regression Models via Cross-Validation J. Chemom., 2 (1988) 39–48

    Article  Google Scholar 

  17. Wold, S. and Eriksson, L., Statistical Validation of QSAR Results, in: Van de Waterbeemd, H. (Ed.), Chemometrics Methods in Molecular Design, VCH Weinheim (Germany), 1995, pp. 309–318.

    Chapter  Google Scholar 

  18. Tropsha, A., Gramatica, P. and Gombar, V. K., The Importance of Being Earnest: Validation is the Absolute Essential for Successful Application and Interpretation of QSPR Models. Quantitative Structure Activity Relationships, 22 (2003) 1–9.

    Google Scholar 

  19. Golbraikh, A. and Tropsha, A. Beware of q2! Journal of Molecular Graphics and Modelling, 20 (2002) 269–276.

    Article  PubMed  CAS  Google Scholar 

  20. Shen, M., Beguin, C., Golbraikh, A., Stables, J., Kohn, H. and Tropsha, A. Application of Predictive QSAR Models to Database Mining: Identification and Experimental Validation of Novel Anticonvulsant Compounds. J. Med. Chem., 47 (2004) 2356–2364.

    Article  PubMed  CAS  Google Scholar 

  21. Atkinson, A. C., Plots, transformations and regression, Clarendon Press, Oxford (UK), 1985, p. 282.

    Google Scholar 

  22. Gulyaeva, N., Zaslavsky, A., Lechner, P., Chlenov, M., Chait, A., Zaslavsky, B. Relative hydrophobicity and lipophilicity of β-blockers and related compounds as measured by aqueous two-phase partitioning, octanol-buffer partitioning, and HPLC. Eur. J. Pharm. Sci., 17 (2002) 81–93.

    Article  PubMed  CAS  Google Scholar 

  23. Walters, W. P., Ajay, Murcko, M. A. Recognizing molecules with drug-like properties. Curr. Opin. Chem. Biol. 3 (1999) 384–387.

    Article  PubMed  CAS  Google Scholar 

  24. Devillers, L. (Ed.), Comparative QSAR. Taylor and Francis, Washington, DC. 1998.

    Google Scholar 

  25. Golbraikh, A. and Tropsha, A., Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection. Molecular Diversity, 5 (2000) 231–243.

    Article  CAS  Google Scholar 

  26. Vanyur, R., Heberger, K., Jakus, J., Prediction of Anti-HIV-1 Activity of a Series of Tetrapyrrole Molecules. Journal Chemical Information Computer Science, 43 (2003) 1829–1836.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Haralambos Sarimveis.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Afantitis, A., Melagraki, G., Sarimveis, H. et al. A novel simple QSAR model for the prediction of anti-HIV activity using multiple linear regression analysis. Mol Divers 10, 405–414 (2006). https://doi.org/10.1007/s11030-005-9012-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11030-005-9012-2

Keywords

Navigation