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Characterization of the satellite DNA Msat-160 from the species Chionomys nivalis (Rodentia, Arvicolinae)

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Abstract

The satellite DNA Msat-160 has been previously characterized in several species of the genus Microtus. Here we present the characterization of Msat-160 from Chionomys nivalis, a species with a very primitive karyotype. As in other Microtus species analyzed, C. nivalis Msat-160 is AT rich, has a monomer length of 160 bp, is undermethylated and is mainly located in all the pericentromeric heterochromatin of all autosomes and the X chromosome, but is completely absent from the Y chromosome. Hence, our results support the hypothesis that Msat-160 was initially distributed in the pericentromeric heterochromatin of all autosomes and the X chromosome. The taxonomic status of the genus Chionomys in relation to the genus Microtus is a very interesting issue, so we constructed phylogenetic dendrograms using Msat-160 sequences from several Microtus species. Although the results were not informative about this issue, the presence of Msat-160 in C. nivalis and Microtus species suggested that both genera are closely related and that this satellite DNA was present in the common ancestor. Studies of Msat-160 in different arvicoline species could help to determine the origin of this satellite and, perhaps, to establish the phylogenetic relationships of some arvicoline groups.

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References

  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    Article  PubMed  CAS  Google Scholar 

  • Bullejos M, Sánchez A, Burgos M, Hera C, Jiménez R, Díaz de la Guardia R (1997) Multiple, polymorphic copies of SRY in both males and females of the vole Microtus cabrerae. Cytogenet Cell Genet 79:167–171

    PubMed  CAS  Google Scholar 

  • Burgos M, Jiménez R, Díaz de la Guardia R (1986) A rapid, simple and reliable combined method for G-banding mammalian and human chromosomes. Stain Technol 61:257–260

    PubMed  CAS  Google Scholar 

  • Burgos M, Jiménez R, Díaz de la Guardia R (1988) Comparative study of G- and C-banded chromosomes of five species of Microtidae: a chromosomal evolution analysis. Genome 30:540–546

    PubMed  CAS  Google Scholar 

  • Ciobanu D, Grechko VV, Darevsky IS, Kramerov DA (2004) New satellite DNA in Lacerta s. str. lizards (Sauria: Lacertidae): evolutionary pathways and phylogenetic impact. J␣Exp Zool (Mol Dev Evol) 302B:505–516

    Article  CAS  Google Scholar 

  • Díaz de la Guardia R, Burgos M, Jiménez R (1981) About the karyotype of Microtus nivalis Martins (Rodentia, Microtinae). Caryologia 34:377–383

    Google Scholar 

  • Fernández R, Barragán MJ, Bullejos M, Marchal JA, Martínez S, Díaz de la Guardia R, Sánchez A (2001) Molecular and cytogenetic characterization of highly repeated DNA sequences in the vole Microtus cabrerae. Heredity 87:637–646

    Article  PubMed  Google Scholar 

  • Ivanov SV, Modi WS (1996) Molecular characterization of the complex sex-chromosome heterochromatin in the rodent Microtus chrotorrhinus. Cytogenet Cell Genet 75:49–56

    PubMed  CAS  Google Scholar 

  • Jaarola M, Martinkova N, Gunduz I, Brunhoff C, Zima J, Nadachowski A, Amori G, Bulatova NS, Chondropoulos B, Fraguedakis-Tsolis S, Gonzalez-Esteban J, Jose Lopez-Fuster M, Kandaurov AS, Kefelioglu H, da Luz Mathias M, Villate I, Searle JB (2004) Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences. Mol Phylogenet Evol 33:647–663

    Article  PubMed  CAS  Google Scholar 

  • Kalscheuer V, Singh AP, Nanda I, Sperling K, Neitzel H (1996) Evolution of the gonosomal heterochromatin of Microtus agrestis: rapid amplification of a large, multimeric, repeat unit containing a 3.0-kb (GATA)11-positive, middle repetitive element. Cytogenet Cell Genet 73:171–178

    Article  PubMed  CAS  Google Scholar 

  • Kholodilov NG, Mayorov VI, Mullokandov MR, Cheryaukene OV, Nesterova TB, Rogozin IB, Zakian SM (1993) LINE-1 element in the vole Microtus subarvalis. Mamm Genome 4:624–626

    Article  PubMed  CAS  Google Scholar 

  • Kimura M (1980) A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111–120

    Article  PubMed  CAS  Google Scholar 

  • Kovarik A, Koukalova B, Lim KY, Matyasek R, Lichtenstein CP, Leitch AR, Bezdek M (2000) Comparative analysis of DNA methylation in tobacco heterochromatic sequences. Chromosome Res 8: 527–541

    Article  PubMed  CAS  Google Scholar 

  • Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5:150–163

    Article  PubMed  CAS  Google Scholar 

  • López-Flores I, de la Herrán R, Garrido-Ramos MA, Boudry P, Ruiz-Rejón C, Ruiz-Rejón M (2004) The molecular phylogeny of oysters based on a satellite DNA related to transposons. Gene 339:181–188

    Article  PubMed  CAS  Google Scholar 

  • Lorite P, Carrillo JA, Tinaut A, Palomeque T (2004) Evolutionary dynamics of satellite DNA in species of the Genus Formica (Hymenoptera, Formicidae). Gene 332:159–168

    Article  PubMed  CAS  Google Scholar 

  • Marchal JA, Acosta MJ, Bullejos M, Díaz de la Guardia R, Sánchez A (2003) Sex chromosomes, sex determination, and sex-linked sequences in Microtidae. Cytogenet Genome Res 101:266–273

    Article  PubMed  CAS  Google Scholar 

  • Marchal JA, Acosta MJ, Bullejos M, Puerma E, Díaz de la Guardia R, Sánchez A (2006) Distribution of L1-retroposons on the giant sex chromosomes of Microtus cabrerae (Arvicolidae, Rodentia): functional and evolutionary implications. Chromosome Res 14:177–186

    Article  PubMed  CAS  Google Scholar 

  • Martínková N, Nová P, Sablina OV, Graphodatsky AS, Zima J␣(2004) Karyotipic relationships of the Tatra vole (Microtus tatricus). Folia Zool 53:279–284

    Google Scholar 

  • Mazurok NA, Rubtsova NV, Isaenko AA, Pavlova ME, Slobodyanyuk SY, Nesterova TB, Zakian SM (2001) Comparative chromosome and mitochondrial DNA analyses and phylogenetic relationships within common voles (Microtus, Arvicolidae). Chromosome Res 9:107–120

    Article  PubMed  CAS  Google Scholar 

  • Megías-Nogales B, Marchal JA, Acosta MJ, Bullejos M, Díaz de la Guardia R, Sánchez A (2003) Sex chromosomes pairing in two Arvicolidae species: Microtus nivalis and Arvicola sapidus. Hereditas 138:114–121

    Article  PubMed  Google Scholar 

  • Modi WS (1992) Nucleotide sequence and genomic organization of a tandem satellite array from the rock vole Microtus chrotorrhinus (Rodentia). Mamm Genome 3:226–232

    Article  PubMed  CAS  Google Scholar 

  • Modi WS (1993a) Comparative analyses of heterochromatin in Microtus: sequence heterogeneity and localized expansion and contraction of satellite DNA arrays. Cytogenet Cell Genet 62:142–148

    CAS  Google Scholar 

  • Modi WS (1993b) Heterogeneity in the concerted evolution process of a tandem satellite array in meadow mice (Microtus). J Mol Evol 37:48–56

    Article  CAS  Google Scholar 

  • Modi WS (1993c) Rapid, localized amplification of a unique satellite DNA family in the rodent Microtus chrotorrhinus. Chromosoma 102:484–490

    Article  CAS  Google Scholar 

  • Modi WS, Serdyukova NA, Vorobieva NV, Graphodatsky AS (2003) Chromosomal localization of six repeated DNA sequences among species of Microtus (Rodentia). Chromosome Res 11:705–13

    Article  PubMed  CAS  Google Scholar 

  • Nadachowski A (1991) Systematics, geographic variation, and evolution of snow voles (Chionomys) based on dental characters. Acta Theriol 36:1–45

    Google Scholar 

  • Neitzel H, Kalscheuer V, Henschel S, Digweed M, Sperling K (1998) Beta-heterochromatin in mammals: evidence from studies in Microtus agrestis based on the extensive accumulation of L1 and non-L1 retroposons in the heterochromatin. Cytogenet Cell Genet 80:165–172

    Article  PubMed  CAS  Google Scholar 

  • Neitzel H, Kalscheuer V, Singh AP, Henschel S, Sperling K (2002) Copy and paste: the impact of a new non-L1 retroposon on the gonosomal heterochromatin of Microtus agrestis. Cytogenet Genome Res 96:179–185

    Article  PubMed  CAS  Google Scholar 

  • Pons J, Gillespie RG (2004) Evolution of satellite DNAs in a radiation of endemic Hawaiian spiders: does concerted evolution of highly repetitive sequences reflect evolutionary history? J Mol Evol 59:632–641

    Article  PubMed  CAS  Google Scholar 

  • Sánchez A, Bullejos M, Burgos M, Jiménez R, Díaz de la Guardia R (1996) An alternative to blunt-end ligation for cloning DNA fragments with incompatible ends. Trends Genet 12:44

    Article  PubMed  Google Scholar 

  • Shevchenko AI, Mazurok NA, Slobodyanyuk SY, Zakian SM (2002) Comparative analysis of the MSAT-160 repeats in four species of common vole (Microtus, Arvicolidae). Chromosome Res 10:117–126

    Article  PubMed  CAS  Google Scholar 

  • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Article  PubMed  CAS  Google Scholar 

  • Yamada K, Nishida-Umehara C, Matsuda Y (2004) A new family of satellite DNA sequences as a major component of centromeric heterochromatin in owls (Strigiformes). Chromosoma 112:277–287

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

The authors wish to thanks Parque Nacional de Sierra Nevada (Granada, Spain) for the permission to capture C. nivalis. This work was supported by the Spanish Ministerio de Ciencia y Tecnología through project numbers: BOS2002-04150-C02-01 and BOS2002-04150-C02-02 and by the Junta de Andalucía throughout the programme “Ayudas a grupos de investigación”, group numbers: CVI 0109 and CVI 220.

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Correspondence to A. Sánchez.

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Acosta, M.J., Marchal, J.A., Martínez, S. et al. Characterization of the satellite DNA Msat-160 from the species Chionomys nivalis (Rodentia, Arvicolinae). Genetica 130, 43–51 (2007). https://doi.org/10.1007/s10709-006-0018-1

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  • DOI: https://doi.org/10.1007/s10709-006-0018-1

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