Abstract
We used variation in a portion of the mitochondrial DNA control region to examine phylogeography of Tamiasciurus hudsonicus, a boreal-adapted small mammal in the central Rocky Mountain region. AMOVA revealed that 65.66% of genetic diversity was attributable to variation within populations, 16.93% to variation among populations on different mountain ranges, and 17.41% to variation among populations within mountain ranges. Nested clade analysis revealed two major clades that likely diverged in allopatry during the Pleistocene: a southern clade from southern Colorado and a northern clade comprising northern Colorado, Wyoming, eastern Utah, and eastern Idaho. Historically restricted gene flow as a result of geographic barriers was indicated between populations on opposite sides of the Green River and Wyoming Basin and among populations in eastern Wyoming. In some instances genetic structure indicated isolation by distance.
Similar content being viewed by others
References
J.E. Aagaard S.S. Vollmer F.C. Sorenson H. Strauss (1995) ArticleTitleMitochondrial DNA products among RAPD profiles are frequent and strongly differentiated between races of Douglas-fir Mol. Ecol. 4 441–447 Occurrence Handle8574443
B.S. Arbogast R.A. Browne P.D. Weigl (2001) ArticleTitleEvolutionary genetics and Pleistocene biogeography of North American tree squirrels (Tamiasciurus) J. Mamm. 82 302–319 Occurrence Handle10.1644/1545-1542(2001)082<0302:EGAPBO>2.0.CO;2
D.M. Armstrong (1972) ArticleTitleDistribution of Mammals in Colorado Monograph of the Museum of Natural History, Univ. Kansas 3 1–415
J.C. Avise (1994) Molecular Markers, Natural History, and Evolution Chapman Hall New York
J.C. Avise (2000) Phylogeography: The History and Formation of Species Harvard University Press Cambridge, Massachusetts
J.C. Avise D. Walker (1998) ArticleTitlePleistocene phylogeographic effects on avian populations and the speciation process Proc. Roy. Soc. Lon. – Series B: Biol. Sci. 265 457–463 Occurrence Handle10.1098/rspb.1998.0317
J.C. Avise D. Walker (1999) ArticleTitleSpecies realities and numbers in sexual vertebrates: perspectives from an asexually transmitted genome Proc. Natl. Acad. Sci. USA 96 992–995 Occurrence Handle10.1073/pnas.96.3.992 Occurrence Handle9927681
Beauvais, G.P., 2000. Mammalian responses to forest fragmentation in the central and southern Rocky Mountains, pp. 177–199 in Forest Fragmentation in the Southern Rocky Mountains, edited by R.L. Knight, F.W. Smith, S.W. Buskirk, W.H. Romme & W.L. Baker. Univ. Press, Colorado, Boulder
J.M. Beiswenger (1991) ArticleTitleLate quaternary vegetational history of Grays Lake, Idaho Ecol. Mono. 6 165–182
E. Bermingham C. Moritz (1998) ArticleTitleComparative phylogeography: concepts and applications Mol. Ecol. 7 367–369 Occurrence Handle10.1046/j.1365-294x.1998.00424.x
D. Berteaux S. Boutin (2000) ArticleTitleBreeding dispersal in female North American red squirrels Ecology 81 1311–1326
M. Clement D. Posada K.A. Crandall (2000) ArticleTitleTCS: a computer program to estimate gene genealogies Mol. Ecol. 9 1657–1659 Occurrence Handle10.1046/j.1365-294x.2000.01020.x Occurrence Handle11050560
H.P. Comes J.W. Kadereit (1998) ArticleTitleThe effects of quaternary climatic changes on plant distribution and evolution Trend Plant Sci. 3 432–438 Occurrence Handle10.1016/S1360-1385(98)01327-2
C.J. Conroy J.A. Cook (2000) ArticleTitlePhylogeography of a post-glacial colonizer: Microtus longicaudus (Rodentia: Muridae) Mol. Ecol. 9 165–175 Occurrence Handle10.1046/j.1365-294x.2000.00846.x Occurrence Handle10672160
M. Dean B. Gerrard (1991) ArticleTitleHelpful hints for the detection of single-stranded conformation polymorphisms Biotechniques 10 8
D.L. Elliot-Fisk B.S. Adkins J.L. Spaulding (1983) ArticleTitleA re-evaluation of the postglacial vegetation of the Laramie Basin Great Bas. Nat. 43 377–384
L. Excoffier P.E. Smouse J.M. Quattro (1992) ArticleTitleAnalysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data Genetics 131 479–491 Occurrence Handle1644282
J.S. Findley S. Anderson (1956) ArticleTitleZoogeography of the montane mammals of Colorado J. Mamm. 37 80–82
V.L. Friesen B.C. Congdon H.E. Walsh T.P. Birt (1997) ArticleTitleIntron variation in marbled murrelets detected using analysis of single-stranded conformation polymorphisms Mol. Ecol. 6 1047–1058 Occurrence Handle10.1046/j.1365-294X.1997.00277.x Occurrence Handle9394463
D.J. Hafner R.M. Sullivan (1995) ArticleTitleHistorical and ecological biogeography of Nearctic pikas (Lagomorpha: Ochotonidae) J. Mamm. 76 302–321
A.H. Harris (1990) ArticleTitleFossil evidence bearing on southwestern mammalian biogeography J. Mamm. 71 219–229
D.L. Haughland K.W. Larsen (2004) ArticleTitleEcology of North American red squirrels across contrasting habitats: relating natal dispersal to habitat J. Mamm. 85 225–236 Occurrence Handle10.1644/BWG-113
G.M. Hewitt (1996) ArticleTitleSome genetic consequences of ice ages, and their role in divergence and speciation Biol. J. Linn. Soc. 58 247–276 Occurrence Handle10.1006/bijl.1996.0035
G.M. Hewitt (1999) ArticleTitlePost-glacial re-colonization of European biota Biol. J. Linn. Soc. 68 87–112 Occurrence Handle10.1006/bijl.1999.0332
K.R. Kelson (1951) ArticleTitleSpeciation in rodents of the Colorado River drainage Univ. Utah Biol. Ser. 11 1–125
Jr, G.L. Kirkland (1981) ArticleTitleThe zoogeography of the mammals of the Uinta Mountains region Southwest. Nat. 26 325–339
D.H. Knight (1994) Mountains and Plains, the Ecology of Wyoming Landscapes Yale University Press New Haven, Connecticut
T.D. Kocher W.K. Thomas A. Meyer S.V. Edwards S. Pääbo F.X. Villablanca A.C. Wilson (1989) ArticleTitleDynamics of mitochondrial DNA evolution in mammals: amplification and sequencing with conserved primers Proc. Nat. Acad. Sci. USA 86 6196–6200 Occurrence Handle2762322
S. Kumar K. Tamura M. Nei (1993) MEGA: Molecular Evolutionary Genetics Analysis, Version 1.1 The Pennsylvania State University University Park
T. Lamb T.R. Jones P.J. Wettstein (1997) ArticleTitleEvolutionary genetics and phylogeography of tassel-eared squirrels (Sciurus aberti) J. Mamm. 78 117–133
K.W. Larson S. Boutin (1994) ArticleTitleMovements, survival, and settlement of red squirrel (Tamiasciurus hudsonicus) offspring Ecology 75 214–223
A.L. Lindsay (1987) ArticleTitleGeographic size and non-size variation in Rocky Mountain Tamiasciurus hudsonicus: significance in relation to Allen’s Rule and vicariant biogeography J. Mamm. 68 39–48
C.A. Long (1965) ArticleTitleThe Mammals of Wyoming Univ. Kansas. Publ., Mus. Nat. Hist 14 493–758
J.L. Longmire M. Maltbie R.J. Baker (1997) ArticleTitleUse of “lysis buffer” in DNA isolation and its implication for museum collections Occas. Pap., Museum., Texas. Tech. Univ 163 1–3
L.D. Martin B.M. Gilbert S.A. Chomko (1979) ArticleTitleDicrostonyx (Rodentia) from the Late Pleistocene of northern Wyoming J. Mamm. 60 193–195
Jr, B. Mears (1981) ArticleTitlePeriglacial wedges and the late Pleistocene environment of Wyoming’s intermountain basins Quatern. Res. 15 171–198
C. Moritz D.P. Faith (1998) ArticleTitleComparative phylogeography and the identification of genetically divergent areas for conservation Mol. Ecol. 7 419–429 Occurrence Handle10.1046/j.1365-294x.1998.00317.x
M. Orita Y. Suzki T.K. Sekiya Hayashi (1989) ArticleTitleRapid and sensitive detection of the point mutations and DNA polymorphisms using the polymerase chain reaction Genomics 5 874–879 Occurrence Handle10.1016/0888-7543(89)90129-8 Occurrence Handle2687159
InstitutionalAuthorNameOxford Molecular (1998) MacVector 6.5. Oxford Molecular Group PLC Symantec Corporation Oxford, United Kingdom
B.D. Patterson (1984) Mammalian extinction and biogeography in the Southern Rocky Mountains M.H. Nitecki (Eds) Extinctions Chicago Press Chicago 247–293
S.C. Porter K.L. Pierce T.D. Hamilton (1983) Late Wisconsin mountain glaciation in the western United States H.E. Wright (Eds) Late Quaternary Environments of the United States Univ. Minnesota Press Minneapolis 71–111
D. Posada K.A. Crandall A.R. Templeton (1999) ArticleTitleGeoDis: a program for the cladistic analysis of the geographical distribution of genetic haplotypes Mol. Ecol. 9 487–488 Occurrence Handle10.1046/j.1365-294x.2000.00887.x
W.R. Rice (1989) ArticleTitleAnalyzing tables of statistical tests Evolution 43 223–225
Schneider, S., J.M. Kueffer, D. Roessli & L. Excoffier, 1997. ARLEQUIN: a software package for population genetics. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland
M.A. Steele (1998) ArticleTitle Tamiasciurus hudsonicus Mamm. Spec. 586 1–9
K. Strimmer A. Haeseler Particlevon (1996) ArticleTitleQuartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies Mol. Biol. Evol. 13 964–969
C. Sun (1997) ArticleTitleDispersal of young in red squirrels (Tamiasciurus hudsonicus) Amer. Midl. Nat. 138 252–259
P. Sunnucks A.C.C. Wilson L.B. Beheregary K. Zenger J. French A.C. Taylor (2000) ArticleTitleSSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology Mol. Ecol. 9 1699–1710 Occurrence Handle10.1046/j.1365-294x.2000.01084.x Occurrence Handle11091307
P. Taberlet L. Fumagalli A.-G. Wust-Saucy Cosson (1998) ArticleTitleComparative phylogeography and postglacial colonization routes in Europe Mol. Ecol. 7 453–464 Occurrence Handle10.1046/j.1365-294x.1998.00289.x Occurrence Handle9628000
N. Takahata S.R. Palumbi (1985) ArticleTitleExtranuclear differentiation and gene flow in the finite island model Genetics 109 441–457
K. Tamura M. Nei (1993) ArticleTitleEstimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees Mol. Biol. Evol. 10 512–526 Occurrence Handle8336541
A.R. Templeton (1998) ArticleTitleNested clade analyses of phylogeographic data testing hypotheses about gene flow and population history Mol. Ecol. 7 381–397 Occurrence Handle10.1046/j.1365-294x.1998.00308.x Occurrence Handle9627999
A.R. Templeton E. Boerwinkle C.F. Sing (1987) ArticleTitleA cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila Genetics 117 343–351 Occurrence Handle2822535
A.R. Templeton K.A. Crandall C.F. Sing (1992) ArticleTitleA cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data III Cladogram estimation Genetics 132 619–633 Occurrence Handle1385266
A.R. Templeton E. Routman C.A. Phillips (1995) ArticleTitleSeparating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum Genetics 140 767–782 Occurrence Handle7498753
R.W. Turner (1974) ArticleTitleMammals of the Black Hills of South Dakota and Wyoming Misc Publ, Mus Nat Hist, Univ Kansas 60 1–178
T.R. Devender ParticleVan W.G. Spaulding (1979) ArticleTitleDevelopment of vegetation and climate in the southwestern United States Science 204 701–710
C. Whitlock (1993) ArticleTitlePostglacial vegetational and climate of Grand Teton and southern Yellowstone National Parks Ecol. Monog. 63 173–198
Wilson, G.M., 2001. Phylogeography of four species of boreal-adapted rodents in the central Rocky Mountain region. Ph.D. Dissert., Oklahoma State Univ., Stillwater
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Wilson, G.M., Den Bussche, R.A., McBee, K. et al. Intraspecific Phylogeography of Red Squirrels (Tamiasciurus hudsonicus) in the Central Rocky Mountain Region of North America. Genetica 125, 141–154 (2005). https://doi.org/10.1007/s10709-005-5154-5
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/s10709-005-5154-5