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Mapping QTL for seed yield and canning quality following processing of black bean (Phaseolus vulgaris L.)

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Abstract

Quantitative trait loci (QTL) analysis was conducted to identify QTL for seed yield and color retention following processing of a recombinant inbred line (RIL) black bean population. A population of 96 RILs were derived from the cross of black bean cultivars ‘Jaguar’ and 115M and evaluated in replicated trials at one location over 4 years (2004–2007) in Michigan. A 119-point genetic map constructed using simple sequence repeat (SSR), sequence related amplified polymorphism (SRAP), target region amplified polymorphism (TRAP) and phenotypic markers spanned fifteen linkage groups (LG) or 460 cM of the bean genome. Fourteen QTL for yield and color retention in four environments were identified by composite interval mapping on six linkage groups. A major QTL SY10.2J115 for seed yield was identified on LG B10 with additional QTL on B3, B5, and B11. Color retention following processing was associated with loci on B1, B3, B5, B8, and B11. 115M possessed positive alleles for yield, but negative alleles for color retention. Some QTL for yield and color retention co-localized with regions identified in previous studies while others, particularly for color retention, were unique. Additional QTL for agronomic and canning quality traits were detected and individual contributions to future black bean breeding are discussed.

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Abbreviations

CIAT:

Centro Internacional de Agricultura Tropical

CIM:

Composite interval mapping

IBL:

Inbred backcross line

MAS:

Marker assisted selection

QTL:

Quantitative trait loci

RIL:

Recombinant inbred line

SCAR:

Sequence characterized amplified region

SRAP:

Sequence related amplified polymorphism

SSR:

Simple sequence repeat

TRAP:

Target region amplified polymorphism

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Acknowledgments

The authors wish to thank Matthew Blair for screening parental lines with SSR markers linked to QTL on B10 at CIAT.

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  1. Department of Crop and Soil Sciences, Michigan State University, East Lansing, MI, 48824, USA

    E. M. Wright & J. D. Kelly

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  1. E. M. Wright
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  2. J. D. Kelly
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Correspondence to J. D. Kelly.

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Wright, E.M., Kelly, J.D. Mapping QTL for seed yield and canning quality following processing of black bean (Phaseolus vulgaris L.). Euphytica 179, 471–484 (2011). https://doi.org/10.1007/s10681-011-0369-2

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