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NBS-LRR gene family in banana (Musa acuminata): genome-wide identification and responses to Fusarium oxysporum f. sp. cubense race 1 and tropical race 4

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Abstract

As the largest family among the plant resistance (R) proteins, the nucleotide-binding site-leucine-rich repeat (NBS-LRR) proteins play significant roles in the defense of pathogens. The completion and improvement of banana reference sequence make a systematic insight into the banana NBS-LRR protein family possible. In this study, a total of 98 NBS-LRR proteins were identified from the banana genome and clustered into eight classes in the phylogenetic tree. NBS-LRR genes were unevenly distributed on all 11 chromosomes of banana. Typical NB-ARC (nucleotide binding-APAF-1, disease resistance proteins, CED-4) and LRR motifs were found in all NBS-LRR proteins and a small number of introns existed in most NBS-LRR genes. Transcriptional profiles of NBS-LRRs were investigated in Fusarium oxysporum f. sp. cubense (Foc) susceptible and resistant banana cultivars BX and HDJ challenged with Foc race 1 (Foc 1) and tropical race 4 (Foc TR4). Among 31 representative NBS-LRRs detected in this study, 12 members showed stronger transcriptional stimulation in HDJ than in BX, while in contrast, eight members exhibited higher expression in BX than in HDJ. This study advances our understanding of roles of banana NBS-LRRs in the defense of Fusarium wilt and will contribute to the genetic improvement of banana resistance.

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Acknowledgments

This work was supported by the Natural Science Foundation of Hainan province (No. 317258); the National Nonprofit Institute Research Grant ITBB 1630052016005; and the Special Fund for Agro-scientific Research in the Public Interest (No. 20153110).

Funding

This study was founded by the Natural Science Foundation of Hainan province (No. 317258); the National Nonprofit Institute Research Grant ITBB 1630052016005; and the Special Fund for Agro-scientific Research in the Public Interest (No. 20153110).

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  1. Key Laboratory of Tropical Crop Biotechnology, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China

    Wenjun Chang, Hanqing Chen & Huicai Zeng

  2. College of Tropical Agriculture and Forestry, Hainan University, Haikou, 570208, China

    Heng Li & Fan Qiao

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  1. Wenjun Chang
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Correspondence to Wenjun Chang.

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Table S1

IDs of 98 candidate NBS-LRR proteins identified in banana genome (XLSX 12 kb)

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Chang, W., Li, H., Chen, H. et al. NBS-LRR gene family in banana (Musa acuminata): genome-wide identification and responses to Fusarium oxysporum f. sp. cubense race 1 and tropical race 4. Eur J Plant Pathol 157, 549–563 (2020). https://doi.org/10.1007/s10658-020-02016-7

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