Abstract
Patatin-like phospholipases (PNPLAs) comprise a protein family whose members contain a conserved patatin-like domain with lipid acyl hydrolase activity. The cloning and characterization of full-length cDNAs of PNPLA3 and PNPLA4 in pigs is reported and, for the first time, an alternative splicing variant of porcine PNPLA4, which skips exon 5 of the normal transcript, was identified. Subsequently, tissue expression analysis by quantitative PCR indicated that porcine PNPLA3 was mainly expressed in both adipose and liver whereas porcine PNPLA4 was abundant in liver. Porcine PNPLA3 and PNPLA4 were assigned respectively to chromosome 5p11-p15 and Xp24.
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Baulande S, Lasnier F, Lucas M, Pairault J (2001) Adiponutrin, a transmembrane protein corresponding to a novel dietary- and obesity-linked mRNA specifically expressed in the adipose lineage. J Biol Chem 276:33336–33344
Dai LH, Xiong YZ, Jiang SW, Chen JF (2010) Molecular characterization and association analysis of porcine adipose triglyceride lipase (PNPLA2) gene. Mol Biol Rep 37:1363–1371
Gao J, Simon M (2005) Identification of a novel keratinocyte retinyl ester hydrolase as a transacylase and lipase. J Invest Dermatol 124:1259–1266
Gao JG, Simon M (2007) A comparative study of human GS2, its paralogues, and its rat orthologue. Biochem Biophys Res Commun 360:501–506
Gao JG, Shih A, Gruber R, Schmuth M, Simon M (2009) GS2 as a retinol transacylase and as a catalytic dyad independent regulator of retinylester accretion. Mol Genet Metab 96:253–260
Gauguier D, Froguel P, Parent V, Bernard C, Bihoreau MT, Portha B, James MR, Penicaud L, Lathrop M, Ktorza A (1996) Chromosomal mapping of genetic loci associated with non-insulin dependent diabetes in the GK rat. Nat Genet 12:38–43
Ghosh S, Watanabe RM, Valle TT, Hauser ER, Magnuson VL, Langefeld CD, Ally DS, Mohlke KL, Silander K, Kohtamaki K, Chines P, Balow J Jr, Birznieks G, Chang J, Eldridge W, Erdos MR, Karanjawala ZE, Knapp JI, Kudelko K, Martin C, Morales-Mena A, Musick A, Musick T, Pfahl C, Porter R, Rayman JB (2000) The Finland-United States investigation of non-insulin-dependent diabetes mellitus genetics (FUSION) study. I. An autosomal genome scan for genes that predispose to type 2 diabetes. Am J Hum Genet 67:1174–1185
Goureau A, Yerle M, Schmitz A, Riquet J, Milan D, Pinton P, Frelat G, Gellin J (1996) Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 36:252–262
Jenkins CM, Mancuso DJ, Yan W, Sims HF, Gibson B, Gross RW (2004) Identification, cloning, expression, and purification of three novel human calcium-independent phospholipase A2 family members possessing triacylglycerol lipase and acylglycerol transacylase activities. J Biol Chem 279:48968–48975
Johansson LE, Hoffstedt J, Parikh H, Carlsson E, Wabitsch M, Bondeson AG, Hedenbro J, Tornqvist H, Groop L, Ridderstrale M (2006) Variation in the adiponutrin gene influences its expression and associates with obesity. Diabetes 55:826–833
Johansson LE, Lindblad U, Larsson CA, Rastam L, Ridderstrale M (2008) Polymorphisms in the adiponutrin gene are associated with increased insulin secretion and obesity. Eur J Endocrinol 159:577–583
Kershaw EE, Hamm JK, Verhagen LA, Peroni O, Katic M, Flier JS (2006) Adipose triglyceride lipase: function, regulation by insulin, and comparison with adiponutrin. Diabetes 55:148–157
Kienesberger PC, Oberer M, Lass A, Zechner R (2009) Mammalian patatin domain containing proteins: a family with diverse lipolytic activities involved in multiple biological functions. J Lipid Res 50 Suppl:S63–S68
Lake AC, Sun Y, Li JL, Kim JE, Johnson JW, Li D, Revett T, Shih HH, Liu W, Paulsen JE, Gimeno RE (2005) Expression, regulation, and triglyceride hydrolase activity of Adiponutrin family members. J Lipid Res 46:2477–2487
Lee WC, Salido E, Yen PH (1994) Isolation of a new gene GS2 (DXS1283E) from a CpG island between STS and KAL1 on Xp22.3. Genomics 22:372–376
Mignery GA, Pikaard CS, Hannapel DJ, Park WD (1984) Isolation and sequence analysis of cDNAs for the major potato tuber protein, patatin. Nucleic Acids Res 12:7987–8000
Polson DA, Thompson MP (2003) Adiponutrin mRNA expression in white adipose tissue is rapidly induced by meal-feeding a high-sucrose diet. Biochem Biophys Res Commun 301:261–266
Polson DA, Thompson MP (2004) Macronutrient composition of the diet differentially affects leptin and adiponutrin mRNA expression in response to meal feeding. J Nutr Biochem 15:242–246
Romeo S, Kozlitina J, Xing C, Pertsemlidis A, Cox D, Pennacchio LA, Boerwinkle E, Cohen JC, Hobbs HH (2008) Genetic variation in PNPLA3 confers susceptibility to nonalcoholic fatty liver disease. Nat Genet 40:1461–1465
Rydel TJ, Williams JM, Krieger E, Moshiri F, Stallings WC, Brown SM, Pershing JC, Purcell JP, Alibhai MF (2003) The crystal structure, mutagenesis, and activity studies reveal that patatin is a lipid acyl hydrolase with a Ser-Asp catalytic dyad. Biochemistry 42:6696–6708
Saarela J, Jung G, Hermann M, Nimpf J, Schneider WJ (2008) The patatin-like lipase family in Gallus gallus. BMC Genomics 9:281
Schrag JD, Cygler M (1997) Lipases and alpha/beta hydrolase fold. Methods Enzymol 284:85–107
Shan T, Wang Y, Wu T, Guo J, Liu J, Feng J, Xu Z (2008) Porcine adipose triglyceride lipase complementary deoxyribonucleic acid clone, expression pattern, and regulation by resveratrol. J Anim Sci 86:1781–1788
Steinberg GR, Kemp BE, Watt MJ (2007) Adipocyte triglyceride lipase expression in human obesity. Am J Physiol Endocrinol Metab 293:E958–E964
Wilson PA, Gardner SD, Lambie NM, Commans SA, Crowther DJ (2006) Characterization of the human patatin-like phospholipase family. J Lipid Res 47:1940–1949
Yerle M, Pinton P, Robic A, Alfonso A, Palvadeau Y, Delcros C, Hawken R, Alexander L, Beattie C, Schook L, Milan D, Gellin J (1998) Construction of a whole-genomeradiation hybrid panel for high-resolution gene mapping in pigs. Cytogenet Cell Genet 82:182–188
Acknowledgments
We are grateful to Dr. Martine Yerle and Denis Milan (INRA, Castanet-Tolosan, France) for kindly providing the RH panel. This work was supported by the grants from Major Projects of National Science and Technology (2009ZX08009-151B), 973 Programme (2006CB102100), 863 Programme (2008AA10Z134, 2006AA10Z140), High Education Doctorial Subject Research Programme (20060504016), General Programme (30771585) and Key Programe of National Natural Science Foundation of China.
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Zhilong Chen and Xin Gao contributed equally to this work.
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Chen, Z., Gao, X., Lei, T. et al. Molecular characterization, expression and chromosomal localization of porcine PNPLA3 and PNPLA4 . Biotechnol Lett 33, 1327–1337 (2011). https://doi.org/10.1007/s10529-011-0591-y
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DOI: https://doi.org/10.1007/s10529-011-0591-y