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Characterization of a glycoside hydrolase family 42 β-galactosidase from Deinococcus geothermalis

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Abstract

A putative recombinant β-galactosidase from Deinococcus geothermalis was purified as a single 79 kDa band of 42 U activity/mg using His-Trap affinity chromatography. The molecular mass of the native enzyme was a 158 kDa dimer. The catalytic residues E151 and E325 of β-galactosidase from D. geothermalis were conserved in all aligned GH family 42 β-galactosidases, indicating that this enzyme is also a GH family 42 β-galactosidase. Maximal activity of the enzyme was at pH 6.5 and 60°C. It has a unique hydrolytic activity for p-nitrophenyl(pNP)-β-d-galactopyranoside (k cat/K m = 69 s−1 mM−1), pNP-β-d-fucopyranoside (13), oNP-β-d-galactopyranoside (9.5), oNP-β-d-fucopyranoside (2.6), lactose (0.97), and pNP-α-l-arabinopyranoside (0.78), whereas no activity, or less than 2% of the pNP-β-d-galactopyranoside activity, for other pNP- and oNP- glycosides.

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References

  • Coker JA, Sheridan PP, Loveland-Curtze J, Gutshall KR, Auman AJ, Brenchley JE (2003) Biochemical characterization of a beta-galactosidase with a low temperature optimum obtained from an Antarctic Arthrobacter isolate. J Bacteriol 185:5473–5482

    Article  CAS  PubMed  Google Scholar 

  • Copeland A, Lucas S, Lapidus A et al (2006) Complete sequence of chromosome 1 of Deinococcus geothermalis DSM 11300. EMBL/GenBank/DDBJ databases

  • Davies G, Henrissat B (1995) Structures and mechanisms of glycosyl hydrolases. Structure 3:853–859

    Article  CAS  PubMed  Google Scholar 

  • Durand P, Lehn P, Callebaut I, Fabrega S, Henrissat B, Mornon JP (1997) Active-site motifs of lysosomal acid hydrolases: invariant features of clan GH-A glycosyl hydrolases deduced from hydrophobic cluster analysis. Glycobiology 7:277–284

    Article  CAS  PubMed  Google Scholar 

  • Ferreira AC, Nobre MF, Rainey FA, Silva MT, Wait R, Burghardt J, Chung AP, da Costa MS (1997) Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. Int J Syst Bacteriol 47:939–947

    Article  CAS  PubMed  Google Scholar 

  • Henrissat B (1991) A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 280(Pt 2):309–316

    CAS  PubMed  Google Scholar 

  • Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G (1995) Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases. Proc Natl Acad Sci USA 92:7090–7094

    Article  CAS  PubMed  Google Scholar 

  • Hidaka M, Fushinobu S, Ohtsu N, Motoshima H, Matsuzawa H, Shoun H, Wakagi T (2002) Trimeric crystal structure of the glycoside hydrolase family 42 beta-galactosidase from Thermus thermophilus A4 and the structure of its complex with galactose. J Mol Biol 322:79–91

    Article  CAS  PubMed  Google Scholar 

  • Hinz SW, van den Brock LA, Beldman G, Vincken JP, Voragen AG (2004) beta-Galactosidase from Bifidobacterium adolescentis DSM20083 prefers beta(1,4)-galactosides over lactose. Appl Microbiol Biotechnol 66:276–284

    Article  CAS  PubMed  Google Scholar 

  • Holmes ML, Scopes RK, Moritz RL, Simpson RJ, Englert C, Pfeifer F, Dyall-Smith ML (1997) Purification and analysis of an extremely halophilic beta-galactosidase from Haloferax alicantei. Biochim Biophys Acta 1337:276–286

    Article  CAS  PubMed  Google Scholar 

  • Hu JM, Li H, Cao LX, Wu PC, Zhang CT, Sang SL, Zhang XY, Chen MJ, Lu JQ, Liu YH (2007) Molecular cloning and characterization of the gene encoding cold-active beta-galactosidase from a psychrotrophic and halotolerant Planococcus sp. L4. J Agric Food Chem 55:2217–2224

    Article  CAS  PubMed  Google Scholar 

  • Kang SK, Cho KK, Ahn JK, Bok JD, Kang SH, Woo JH, Lee HG, You SK, Choi YJ (2005) Three forms of thermostable lactose-hydrolase from Thermus sp. IB-21: cloning, expression, and enzyme characterization. J Biotechnol 116:337–346

    Article  PubMed  Google Scholar 

  • Li L, Zhang M, Jiang Z, Tang L, Cong Q (2009) Characterisation of a thermostable family 42 beta-galactosidase from Thermotoga maritima. Food Chem 112:844–850

    Article  CAS  Google Scholar 

  • Pan Q, Zhu J, Liu L, Cong Y, Hu F, Li J, Yu X (2010) Functional identification of a putative beta-galactosidase gene in the special lac gene cluster of Lactobacillus acidophilus. Curr Microbiol 60:172–178

    Article  CAS  PubMed  Google Scholar 

  • Park AR, Oh DK (2010) Effects of galactose and glucose on the hydrolysis reaction of a thermostable beta-galactosidase from Caldicellulosiruptor saccharolyticus. Appl Microbiol Biotechnol 85:1427–1435

    Article  CAS  PubMed  Google Scholar 

  • Puri M, Gupta S, Pahuja P, Kaur A, Kanwar JR, Kennedy JF (2009) Cell disruption optimization and covalent immobilization of beta-d-galactosidase from Kluyveromyces marxianus YW-1 for lactose hydrolysis in milk. Appl Biochem Biotechnol 160:98–108

    Article  PubMed  Google Scholar 

  • Shaikh SA, Khire JM, Khan MI (1999) Characterization of a thermostable extracellular beta-galactosidase from a thermophilic fungus Rhizomucor sp. Biochim Biophys Acta 1472:314–322

    CAS  PubMed  Google Scholar 

  • Yuan T, Yang P, Wang Y, Meng K, Luo H, Zhang W, Wu N, Fan Y, Yao B (2008) Heterologous expression of a gene encoding a thermostable beta-galactosidase from Alicyclobacillus acidocaldarius. Biotechnol Lett 30:343–348

    Article  CAS  PubMed  Google Scholar 

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Acknowledgment

This study was carried out with the support of the 21C Frontier Project for Microbial Genomics, Ministry of Education, Science and Technology.

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Correspondence to Deok-Kun Oh.

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Lee, JH., Kim, YS., Yeom, SJ. et al. Characterization of a glycoside hydrolase family 42 β-galactosidase from Deinococcus geothermalis . Biotechnol Lett 33, 577–583 (2011). https://doi.org/10.1007/s10529-010-0459-6

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  • DOI: https://doi.org/10.1007/s10529-010-0459-6

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