Abstract
The Azorean endemic gymnosperm Juniperus brevifolia (Seub.) Antoine is a top priority species for conservation in Macaronesia, based on its ecological significance in natural plant communities. To evaluate genetic variability and differentiation among J. brevifolia populations from the Azorean archipelago, we studied 15 ISSR and 15 RAPD markers in 178 individuals from 18 populations. The average number of polymorphic bands per population was 65 for both ISSR and RAPD. The majority of genetic variability was found within populations and among populations within islands, and this partitioning of variability was confirmed by AMOVA. The large majority of population pairwise F ST values were above 0.3 and below 0.6. The degree of population genetic differentiation in J. brevifolia was relatively high compared with other species, including Juniperus spp. The genetic differentiation among populations suggests that provenance should be considered when formulating augmentation or reintroduction strategies.
Similar content being viewed by others
References
Adams RP (2000) Systematics of Juniperus section Juniperus based on leaf essential oils and random amplified polymorphic DNA (RAPDs). Biochem Syst Ecol 28:515–528
Adams RP (2004) Junipers of the world: the genus Juniperus. Trafford Publishing, Vancouver
Adams RP (2008) Junipers of the world: the genus Juniperus, 2nd edn. Trafford Publishing, Vancouver
Adams RP, Demeke T (1993) Systematic relationships in Juniperus based on randomly amplified polymorphic DNAs (RAPDs). Taxon 42:553–571
Adams RP, Flournoy LE, Singh RL, Johnson H, Mayeux H (1998) Invasion of grasslands by Juniperus ashei: a new theory based on random amplified polymorphic DNAs (RAPDs). Biochem Syst Ecol 26:371–377
Adams RP, Schwazbach AE, Pandey RN (2003) The concordance of terpenoid, ISSR and RAPD markers, and ITS sequence data sets among genotypes: an example from Juniperus. Biochem Syst Ecol 31:375–387
Bahulikar RA, Lagu MD, Kulkarni BG, Pandit SS, Suresh HS, Rao MKV, Ranjekar PK, Gupta VS (2004) Genetic diversity among spatially isolated populations of Eurya nitida Korth (Theaceae) based on inter-simple sequence repeats. Curr Sci 86(6):824–831
Barrett SCH, Kohn R (1991) Genetic and evolutionary consequences of small population size in plants: implications for conservation. In: Falk DA, Holsinger KE (eds) Genetic conservation of rare plants. Oxford University Press, New York, pp 1–30
Calvert AT, Moore RB, McGeehin JP, Silva AMR (2006) Volcanic history and 40Ar/39Ar geochronology of Terceira Island, Azores, Portugal. J Volcanol Geothermal Res 156:103–115
Cardoso P, Borges PAV, Costa AC, Cunha RT, Gabriel R, Martins AF, Silva L, Homem N, Martins M, Rodrigues P, Martins B, Mendonça E (2008) A perspectiva arquipelágica: Açores. In: Martín JL, Arechavaleta MJ, Borges PAV, Faria B (eds) Top 100 Las cien especies amenazadas prioritarias de gestión en la región europea biogeográfica de la Macaronesia. Consejeria de Medio Ambiente y Ordenación Territorial, Gobierno de Canarias, pp 421–449
Carine MA, Schaefer H (2010) The Azorean diversity enigma: why are there so few Azorean endemic flowering plants and why are they so widespread? J Biogeogr 37:77–89
Chen S, Xia T, Chen S, Zhou Y (2004) RAPD profiling in detecting genetic variation in endemic Coelonema (Brassicaceae) of Qinghai-Tibet Plateau of China. Biochem Genet 43(3/4):189–201
Delgado P, Piñero D, Chaos A, Pérez-Nasser N, Alvarez-Buylla E (1999) High population differentiation and genetic variation in the endangered Mexican pine Pinus rzedowskii (Pinaceae). Am J Bot 86(5):669–676
Dias E (1996) Vegetação natural dos Açores. PhD thesis, University of the Azores
Dias E, Elias RB, Nunes V (2004) Vegetation mapping and nature conservation: a case study in Terceira Island (Azores). Biodivers Conserv 13:1519–1539
Dias E, Araújo C, Mendes JF, Elias RB, Mendes C, Melo C (2007a) Espécies florestais das ilhas—Açores. In: Silva JS (ed) Árvores e florestas de Portugal. PúblicoComunicação Social SA e Fundação Luso-Americana para o Desenvolvimento, Lisboa, pp 199–254
Dias E, Pereira D, Medeiros V, Mendes J, Elias RB (2007b) Distribuição das principais manchas florestais—Açores. In: Silva JS (ed) Árvores e florestas de Portugal. Público Comunicação Social, SA e Fundação Luso-Americana para o Desenvolvimento, Lisboa, pp 299–322
Dias E, Elias RB, Melo C, Mendes C (2007c) Biologia e ecologia das florestas das ilhas—Açores In: JS Silva (ed), Árvores e florestas de Portugal. Comunicação Social Público, SA e Fundação Luso-Americana para o Desenvolvimento, Lisboa, pp 51–80
Elias RB (2007) Ecologia das florestas de Juniperus dos Açores. PhD thesis, University of the Azores
Elias RB, Dias E (2004) Primary succession on lava domes on Terceira (Azores). J Veg Sci 15:331–338
Elias RB, Dias E (2009) Gap dynamics and regeneration strategies in Juniperus-Laurus forests of the Azores Islands. Plant Ecol 200:179–189
Felsenstein J (2004) Phylip (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
Ferreira CR, Piredda R, Bagnoli F, Bellarosa R, Attimonelli M, Fineschi S, Schirone B, Simeone MC (2010) Phylogeography and conservation perspectives of an endangered Macaronesian endemic: Picconia azorica (Tutin) Knobl. (Oleaceae). Eur J Forest Res. doi:10.1007/s10342-010-0420
Filho HDC, Machado MA, Targon MLPN, Moreira MCPQDG, Pompeu J (1998) Analysis of the genetic diversity among mandarins (Citrus spp.) using RAPD markers. Euphytica 102:133–139
França Z, Cruz JV, Nunes JC, Forjaz VH (2003) Geologia dos Açores: uma perspectiva actual. Açoreana 10(1):11–140
Francisco-Ortega J, Barber J, Santos-Guerra A, Febles R, Jansen RK (2001) Origin and evolution of the endemic genera of Gonosperminae (Asteraceae: Anthemideae) from the Canary Islands: evidence from nucleotide sequences of the internal transcribed spacers of the nuclear ribosomal DNA. Am J Bot 88:161–169
Franco JA (1986) XXIX Cupressaceae. Juniperus. Flora Ibérica, plantas vasculares de la Península Ibérica e Islas Baleares 1:181–188
Geburek T (1997) Isozymes and DNA markers in gene conservation of forest trees. Biodivers Conserv 6:1639–1654
Grassi F, Cazzaniga E, Minuto L, Peccenini S, Barberis G, Basso B (2005) Evaluation of biodiversity and conservation strategies in Pancratium maritimum L for the Northern Tyrrhenian Sea. Biodivers Conserv 14:2159–2169
Kim SC, Lee C, Santos-Guerra A (2005) Genetic analysis and conservation of the endangered Canary Island woody sow-thistle, Sonchus gandogeri (Asteraceae). J Plant Res 118:147–153
Lee S, Kim Y, Kim W (2003) Lack of allozyme and ISSR variation in the rare endemic tree species, Berchemia berchemiaefolia (Rhammnaceae) in Korea. Ann For Sci 60:357–360
Li A, Ge S (2001) Genetic variation and clonal diversity of Psammochloa villosa (Poaceae) detected by ISSR markers. Ann Bot 87:585–590
Lynch M, Milligan B (1994) Analysis of population-genetic structure using RAPD markers. Mol Ecol 3:91–99
Machado MA, Coletta Filho HD, Targon MLPN, Pompeu J Jr (1996) Genetic relationship of Mediterranian mandarins (Citrus deliciosa Tenore) using RAPD markers. Euphytica 92:321–326
Makrem A, Najeh BF, Laarbi KM, Mohamed B (2006) Genetic diversity in Tunisian Ceratonia siliqua L (Caesalpinioideae) natural populations. Genet Resour Crop Evol 53:1501–1511
Mao K, Hao G, Liu J, Adams RP, Milne RI (2010) Diversification and biogeography of Juniperus (Cupressaceae): variable diversification rates and multiple intercontinental dispersals. New Phytol 188:254–272
Martín JL (2005) Guía metodológica para la elaboración de planes de especies amenazadas de Canarias. Dirección General del Medio Natural, Gobierno de Canarias
Meimberg H, Abele T, Bräuchler C, McKay JK, Pérez de Paz PL, Heubl G (2006) Molecular evidence for adaptive radiation of Micromeria Benth (Lamiaceae) on the Canary Islands as inferred from chloroplast and nuclear DNA sequences and ISSR fingerprint data. Mol Phylogenet Evol 41:566–578
Meloni M, Perini D, Filigheddu R, Binelli G (2006) Genetic variation in five Mediterranean populations of Juniperus phoenicea as revealed by inter-simple sequence repeat (ISSR) markers. Ann Bot 97(2):299–304
Moniz J, Silva L (2003) Impact of Clethra arborea Aiton (Clethraceae) in a special protection area of São Miguel island, Azores. Arquipélago. Life Marine Sci 20A:37–46
Moraes PLR, Derbyshire MTVC (2003) Diferenciação genética e diversidade genética em populações naturais de Crytocarya aschersoniana Mez (Lauraceae). Biota Neotropica 3:1–10
Morgan-Richards M, Wolff K (1999) Genetic structure and differentiation of Plantago major reveals a pair of sympatric sister species. Mol Ecol 8:1027–1036
Nagaoka T, Orihara Y (1997) Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor Appl Genet 94:597–602
Neel MC, Ellstrand NC (2003) Conservation of genetic diversity in the endangered plant Eriogonum ovalifolium var vineum (Polygonaceae). Conserv Genet 4:337–352
Nunes JC, Camacho A, França Z, Montesinos FG, Alves M, Vieira R, Velez E, Ortiz E (2006) Gravity anomalies and crustal signature of volcano-tectonic structures of Pico Island (Azores). J Volcanol Geothermal Res 156:55–70
Ouborg NJ, Piquot Y, Van Groenendael JM (1999) Population genetics, molecular markers and the study of dispersal in plants. J Ecol 87:551–568
Palacios C, González-Candelas P (1997) Analysis of population genetic structure and variability using RAPD markers in the endemic and endangered Limonium dufourii (Plumbaginaceae). Mol Ecol 6:1107–1121
Provan J, Beatty GE, Hunter AM, McDonald RA, McLaughlin E, Preston SJ, Wilson S (2008) Restricted gene flow in fragmented populations of a wind-pollinated tree. Conserv Genet 9:1521–1532
Rogers DL, Matheson AC, Vargas-Hernández JJ, Guerra-Santos JJ (2006) Genetic conservation of insular populations of Monterey pine (Pinus radiata D. Don). Biodivers Conserv 15:779–798
Rossetto M, Jezierski G, Hopper SD, Dixon KW (1999) Conservation genetics and clonality in two critically endangered eucalypts from the highly endemic south-western Australian flora. Biol Conserv 88:321–331
Sales E, Nebauer SG, Mus M, Segura J (2001) Population genetic study in the Balearic endemic plant species Digitalis minor (Scrophulariaceae) using RAPD markers. Am J Bot 88(10):1750–1759
Salla MFS, Ruas CF, Ruas PM, Pípolo VC (2002) Uso de marcadores moleculares na análise da variabilidade genética em acerola (Malpighia emarginata D C). Revista Brasileira de Fruticultura 24:15–22
Schaefer H (2003) Chorology and diversity of the Azorean flora. Diss Bot 374:1–130
Schneider S, Roessli D, Excoffier L (2000) Arlequin ver 2000: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland
Segarra-Moragues JG, Palop-Esteban M, González-Candelas F, Catalán P (2005) On the verge of extinction: genetics of the critically endangered Iberian plant species, Borderea chouardii (Dioscoreaceae) and implications for conservation management. Mol Ecol 14:969–982
Silva L, Smith CW (2006) A quantitative approach to the study of non-indigenous plants: an example from the Azores Archipelago. Biodivers Conserv 15:1661–1679
Silva L, Ojeda Land E, Rodríguez Luengo JL (eds) (2008) Invasive terrestrial flora and fauna of Macaronesia. Top 100 in Azores. Madeira and Canaries, ARENA, Ponta Delgada
Silva L, Martins M, Maciel G, Moura M (2009) Azorean vascular flora: priorities in conservation. Amigos dos Açores & CCPA, Ponta Delgada
Silva L, Moura M, Schaefer H, Rumsey F, Furtado E (2010) List of vascular plants (Tracheobionta). In: Borges PAV, Costa A, Cunha R, Gabriel R, Gonçalves V, Martins AF, Melo I, Parente M, Raposeiro P, Rodrigues P, Santos RS, Silva L, Vieira P, Vieira V (eds) A list of the terrestrial and marine biota from the Azores. Princípia, Cascais, pp 117–146
Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science 236:787–792
Sosa PA (2001) Genes, poblaciones y espécies. In: Martín-Esquivel J, Fernández-Palacios JM (eds) Naturaleza de Canárias, pp 151–155. Publicaciones Turquesa SL, Santa Cruz de Tenerife, pp 151–155
Torres E, Iriondo JM, Pérez C (2003) Genetic structure of an endangered plant, Antirrinum microphyllum (Scrophulariaceae): allozyme and RAPD analysis. Am J Bot 90(1):85–92
Trusty JL, Olmstead RG, Santos-Guerra A, Sá-Fontinha S, Francisco-Ortega J (2005) Molecular phylogenetics of the Macaronesian endemic genus Bystropogon (Lamiaceae): palaeo-islands, ecological shifts and interisland colonisations. Mol Ecol 14:1177–1189
Vidor MA, Ruiz CP, Moreno SV, Floss PA (2002) Genetic variability in a trial of erva-mate (Ilex paraguariensis St Hil) progenies. Ciência Rural 32(4):583–587
Yeh FC, Yang RC, Boyle TB, Ye J, Mao J (1997) Popgene, the user-friendly shareware for population genetic analysis. Agricultural Food and Forestry Molecular Biology Centre, University of Alberta, Canada
Acknowledgments
This project was supported by Direcção Regional dos Recursos Florestais, Azores, the Project Interreg III B Biomabanc, and the Veronica project, financed by DRCTC (Azores Government to LS and MM). The manuscript was improved thanks to the suggestions of two anonymous reviewers. Dale Richardson revised the English version of the manuscript.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Silva, L., Elias, R.B., Moura, M. et al. Genetic Variability and Differentiation Among Populations of the Azorean Endemic Gymnosperm Juniperus brevifolia: Baseline Information for a Conservation and Restoration Perspective. Biochem Genet 49, 715–734 (2011). https://doi.org/10.1007/s10528-011-9445-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10528-011-9445-5