Abstract
Class I α-mannosidases play an important role in co- and post-translational N-glycosylation modification of proteins, and also in glycoprotein glycan hydrolysis. Herein, we investigated a protein named Man-41, from liquid exudate droplets secreted on the surface of developing sclerotia by Sclerotinia sclerotiorum. The protein was identified by MALDI-TOF mass spectrometry to be a α-mannosidase. The full-length open reading frame of Man-41 consists of 1581 bp, encoding 526 amino acid residues and containing a putative signal peptide at amino acid residues 1–20, and a conserved sequence at residues 50–521. Man-41 was classified into glycoside hydrolase family 47 (GH47) by clustering analysis. The catalytic residues include Glu125, Arg129, Asp270, Ser271, Glu274, Arg420, Glu422, Glu425, Glu485, Thr514, and Glu515, which are conserved in all Class I α-1,2-mannosidases. Recombinant Man-41 protein had 26.67 ± 2.18 U/mg of α-mannosidase activity, about one-half of intracellular mannosidase activity of sclerotia. In conclusion, this is the first time that mannosidase has been identified in an extracellular fluid and Man-41 is also a new member of GH47 with Ca2+-dependent characteristics. This work lays the foundation for further study of the function of Man-41 in sclerotial development.
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Akao T, Yamaguchi M, Yahara A, Yoshiuchi K, Fujita H, Yamada O, Akita O, Ohmachi T, Asada Y, Yoshida T (2006) Cloning and expression of 1,2-alpha-mannosidase gene (fmanIB) from filamentous fungus Aspergillus oryzae: in vivo visualization of the FmanIBp-GFP fusion protein. Biosci Biotechnol Biochem 70:471–479
Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195–201
Biasini M, Bienert S, Waterhouse A, Arnold K, Studer G, Schmidt T, Kiefer F, Cassarino TG, Bertoni M, Bordoli L, Schwede T (2014) SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res 42:W252–W258
Biosciences A (2002) GST gene fusion system handbook. The Company, Piscataway
Bischoff J, Kornfeld R (1984) The effect of 1-deoxymannojirimycin on rat liver alpha-mannosidases. Biochem Biophys Res Commun 125:324–331
Boettner M, Prinz B, Holz C, Stahl U, Lang C (2002) High-throughput screening for expression of heterologous proteins in the yeast Pichia pastoris. J Biotechnol 99:51–62
Bordoli L, Kiefer F, Arnold K, Benkert P, Battey J, Schwede T (2008) Protein structure homology modeling using SWISS-MODEL workspace. Nat Protoc 4:1–13
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254
Cooke RC (1969) Changes in soluble carbohydrates during sclerotium formation by Sclerotinia sclerotiorum and S. trifoliorum. Trans Br Mycol Soc 53:77–86
Corpet F (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 16:10881–10890
Eades CJ, Hintz WE (2000) Characterization of the class I alpha-mannosidase gene family in the filamentous fungus Aspergillus nidulans. Gene 255:25–34
Elbein AD (1991) Glycosidase inhibitors: inhibitors of N-linked oligosaccharide processing. FASEB J 5:3055–3063
Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins M, Appel R, Bairoch A (2005) Protein identification and analysis tools on the ExPASy server. Humana Press, New York, pp 571-607
Gonzalez DS, Jordan IK (2000) The alpha-mannosidases: phylogeny and adaptive diversification. Mol Biol Evol 17:292–300
Gouet P, Robert X, Courcelle E (2003) ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res 31:3320–3323
Henrissat B, Bairoch A (1996) Updating the sequence-based classification of glycosyl hydrolases. Biochem J 316(Pt 2):695–696
Herscovics A (1999) Importance of glycosidases in mammalian glycoprotein biosynthesis. Biochim Biophys Acta 1473:96–107
Herscovics A, Schneikert J, Athanassiadis A, Moremen KW (1994) Isolation of a mouse Golgi mannosidase cDNA, a member of a gene family conserved from yeast to mammals. J Biol Chem 269:9864–9871
Hossain MA, Nakamura K, Kimura Y (2009) alpha-mannosidase involved in turnover of plant complex type N-glycans in tomato (Lycopersicum esculentum) fruits. Biosci Biotechnol Biochem 73:140–146
Ichishima E, Taya N, Ikeguchi M, Chiba Y, Nakamura M, Kawabata C, Inoue T, Takahashi K, Minetoki T, Ozeki K, Kumagai C, Gomi K, Yoshida T, Nakajima T (1999) Molecular and enzymic properties of recombinant 1, 2-alpha-mannosidase from Aspergillus saitoi overexpressed in Aspergillus oryzae cells. Biochem J 339(Pt 3):589–597
Jones D (1970) Ultrastructure and composition of the cell walls of Sclerotinia sclerotiorum. Trans Br Mycol Soc 54:351–360
Lal A, Schutzbach JS, Forsee WT, Neame PJ, Moremen KW (1994) Isolation and expression of murine and rabbit cDNAs encoding an alpha 1,2-mannosidase involved in the processing of asparagine-linked oligosaccharides. J Biol Chem 269:9872–9881
Letunic I, Doerks T, Bork P (2012) SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 40:D302–D305
Liang Y, Strelkov SE, Kav NN (2010) The proteome of liquid sclerotial exudates from Sclerotinia sclerotiorum. J Proteome Res 9:3290–3298
Liebminger E, Huttner S, Vavra U, Fischl R, Schoberer J, Grass J, Blaukopf C, Seifert GJ, Altmann F, Mach L, Strasser R (2009) Class I alpha-mannosidases are required for N-glycan processing and root development in Arabidopsis thaliana. Plant Cell 21:3850–3867
Lobsanov YD, Vallee F, Imberty A, Yoshida T, Yip P, Herscovics A, Howell PL (2002) Structure of Penicillium citrinum alpha 1,2-mannosidase reveals the basis for differences in specificity of the endoplasmic reticulum and Golgi class I enzymes. J Biol Chem 277:5620–5630
Lobsanov YD, Yoshida T, Desmet T, Nerinckx W, Yip P, Claeyssens M, Herscovics A, Howell PL (2008) Modulation of activity by Arg407: structure of a fungal-1,2-mannosidase in complex with a substrate analogue. Acta Crystallogr D Biol Crystallogr 64:227–236
Mast SW, Moremen KW (2006) Family 47 alpha-mannosidases in N-glycan processing. Methods Enzymol 415:31–46
Mora-Montes HM, Lopez-Romero E, Zinker S, Ponce-Noyola P, Flores-Carreon A (2004) Hydrolysis of Man9GlcNAc2 and Man8GlcNAc2 oligosaccharides by a purified alpha-mannosidase from Candida albicans. Glycobiology 14:593–598
Mora-Montes HM, Lopez-Romero E, Zinker S, Ponce-Noyola P, Flores-Carreon A (2006) Purification of soluble alpha1,2-mannosidase from Candida albicans CAI-4. FEMS Microbiol Lett 256:50–56
Mora-Montes HM, Lopez-Romero E, Zinker S, Ponce-Noyola P, Flores-Carren A (2008) Heterologous expression and biochemical characterization of α-1,2-mannosidase encoded by the Candida albicans MNS1 gene. Memarias do Inst Oswaldo Cruz 103:724–730
Moremen KW, Ernst B, Hart GW, Sinaý P (2008) α-Mannosidases in asparagine-linked oligosaccharide processing and catabolism. Wiley-VCH Verlag GmbH, Germany, pp 81–117
Movsichoff F, Castro OA, Parodi AJ (2005) Characterization of Schizosaccharomyces pombe ER alpha-mannosidase: a reevaluation of the role of the enzyme on ER-associated degradation. Mol Biol Cell 16:4714–4724
Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8:785–786
Prence EM, Natowicz MR (1992) Diagnosis of alpha-mannosidosis by measuring alpha-mannosidase in plasma. Clin Chem 38:501–503
Rajesh T, Jeon JM, Song E, Park HM, Seo HM, Kim HJ, Yi DH, Kim YH, Choi KY, Kim YG, Park HY, Lee YK, Yang YH (2014) Putative role of a Streptomyces coelicolor-derived alpha-mannosidase in deglycosylation and antibiotic production. Appl Biochem Biotechnol 172:1639–1651
Rivera-Marrero CA, Ritzenthaler JD, Roman J, Moremen KW (2001) Molecular cloning and expression of an alpha-mannosidase gene in Mycobacterium tuberculosis. Microb Pathog 30:9–18
Schagger H (2006) Tricine-SDS-PAGE. Nat Protoc 1:16–22
Schrodinger, LLC (2010) The PyMOL Molecular Graphics System, Version 1.3r1
Schultz J, Milpetz F, Bork P, Ponting CP (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci USA 95:5857–5864
Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31:3381–3385
Takekawa M, Saito H (1998) A family of stress-inducible GADD45-like proteins mediate activation of the stress-responsive MTK1/MEKK4 MAPKKK. Cell 95:521–530
Tremblay LO, Herscovics A (2000) Characterization of a cDNA encoding a novel human Golgi alpha 1, 2-mannosidase (IC) involved in N-glycan biosynthesis. J Biol Chem 275:31655–31660
Vallée F, Karaveg K, Herscovics A, Moremen KW, Howell PL (2000) Structural basis for catalysis and inhibition of N-glycan processing class I α1,2-mannosidases. J Biol Chem 275:41287–41298
Van Petegem F, Contreras H, Contreras R, Van Beeumen J (2001) Trichoderma reesei alpha-1,2-mannosidase: structural basis for the cleavage of four consecutive mannose residues. J Mol Biol 312:157–165
Wang SS, Xu XJ, Lu H (2012) Progress in alpha-mannosidases. Prog. Vet Med 33:92–97
Westermeier R (2006) Sensitive, quantitative, and fast modifications for Coomassie Blue staining of polyacrylamide gels. Proteomics 6:61–64
Zhou J, Lin CZ, Zheng XZ, Lin XJ, Sang WJ, Wang SH, Wang ZH, Ebbole D, Lu GD (2009) Functional analysis of an alpha-1,2-mannosidase from Magnaporthe oryzae. Curr Genet 55:485–496
Acknowledgments
We thank Hong Jin from Fudan University for TOF–MS analysis and Di Guan from Hunan Academy of Agricultural Sciences for ICP-MS analysis. This work was supported by the National 973 Project of China (2012CB910501) and the National Natural Science Foundation of China (31071455).
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Zhengli Liu and Ran Wei have contributed equally to this work.
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Liu, Z., Wei, R., He, W. et al. Characterization of an extracellularly derived α-mannosidase from the liquid exudate of the sclerotia of Sclerotinia sclerotiorum (Lib.) de Bary. Antonie van Leeuwenhoek 108, 107–115 (2015). https://doi.org/10.1007/s10482-015-0468-5
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DOI: https://doi.org/10.1007/s10482-015-0468-5