Skip to main content
Log in

Alteromonas halophila sp. nov., a new moderately halophilic bacterium isolated from a sea anemone

  • Original Paper
  • Published:
Antonie van Leeuwenhoek Aims and scope Submit manuscript

Abstract

A pale yellow-colored, moderately halophilic, Gram-negative, catalase- and oxidase-positive, non-sporulating, rod-shaped, motile, aerobic bacterium, designated strain JSM 073008T, was isolated from a sea anemone (Anthopleura xanthogrammica) collected from Naozhou Island, Leizhou Bay, South China Sea. The organism was able to grow with 1–20% (w/v) total salts (optimum, 5–10%), at pH 6.0–10.0 (optimum, pH 7.5) and 10–40°C (optimum, 25–30°C). The major cellular fatty acids were C16:0, C16:1 ω7c/iso-C15:0 2-OH and C18:1 ω7c. The polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol and an unidentified phospholipid. The predominant respiratory quinone was Q-8 and the genomic DNA G + C content was 47.5 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JSM 073008T should be assigned to the genus Alteromonas, being most closely related to Alteromonas hispanica F-32T (sequence similarity 96.9%), followed by Alteromonas genovensis LMG 24078T (96.6%) and Alteromonas litorea TF-22T (96.4%). The sequence similarities between the novel isolate and the type strains of other recognized Alteromonas species ranged from 95.9% (with Alteromonas stellipolaris ANT 69aT) to 94.5% (with Alteromonas simiduii BCRC 17572T). The combination of phylogenetic analysis, phenotypic characteristics and chemotaxonomic data supported the view that strain JSM 073008T represents a new species of the genus Alteromonas, for which the name Alteromonas halophila sp. nov. is proposed. The type strain is JSM 073008T (=CCTCC AA 207035T = KCTC 22164T).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Atlas RM (1993) Handbook of microbiological media. Parks LC (ed). CRC Press, Boca Raton, pp 542–544

  • Baumann L, Baumann P, Mandel M, Allen RD (1972) Taxonomy of aerobic marine eubacteria. J Bacteriol 110:402–429

    PubMed  CAS  Google Scholar 

  • Baumann P, Baumann L, Bowditch RD, Beaman B (1984) Taxonomy of Alteromonas: A. nigrifaciens sp. nov., nom. rev.; A. macleodii and A. haloplanktis. Int J Syst Bacteriol 34:145–149

    Google Scholar 

  • Bowman JP, McMeekin TA (2005) Genus I. Alteromonas baumann, Baumann, Mandel and Allen 1972, 418, emend. Gauthier, Gauthier and Christen 1995a, 760. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds) Bergey’s manual of systematic bacteriology. Part B, vol 2, 2nd edn. Springer, New York, pp 444–447

    Google Scholar 

  • Chen YG, Cui XL, Pukall R, Li HM, Yang YL, Xu LH, Wen ML, Peng Q, Jiang CL (2007) Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south–west China. Int J Syst Evol Microbiol 57:2327–2332. doi:10.1099/ijs.0.64783-0

    Article  PubMed  CAS  Google Scholar 

  • Chen YG, Zhang YQ, Huang K, Tang SK, Cao Y, Shi JX, Xiao HD, Cui XL, Li WJ (2009) Pigmentiphaga litoralis sp. nov., a facultatively anaerobic bacterium isolated from tidal flat sediment. Int J Syst Evol Microbiol 59:521–525. doi:10.1099/ijs.0.002949-0

    Article  PubMed  CAS  Google Scholar 

  • Chiu HH, Shieh WY, Lin SY, Tseng CM, Chiang PW, Wagner-Döbler I (2007) Alteromonas tagae sp. nov. and Alteromonas simiduii sp. nov., mercury-resistant bacteria isolated from a Taiwanese estuary. Int J Syst Evol Microbiol 57:1209–1216. doi:10.1099/ijs.0.64762-0

    Article  PubMed  CAS  Google Scholar 

  • Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in Actinomycetes and Corynebacteria. J Gen Microbiol 100:221–230

    PubMed  CAS  Google Scholar 

  • Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London

    Google Scholar 

  • Cui XL, Mao PH, Zeng M, Li WJ, Zhang LP, Xu LH, Jiang CL (2001) Streptomonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51:357–363

    PubMed  CAS  Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evol Int J Org Evol 39:783–791. doi:10.2307/2408678

    Google Scholar 

  • Felsenstein J (1997) An alternative least-squares approach to inferring phylogenies from pairwise distances. Syst Biol 46:101–111. doi:10.2307/2413638

    PubMed  CAS  Google Scholar 

  • Gauthier G, Gauthier M, Christen R (1995) Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45:755–761

    PubMed  CAS  Google Scholar 

  • Gregersen T (1978) Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5:123–127. doi:10.1007/BF00498806

    Article  Google Scholar 

  • Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM (1985) Preparation of chromosomal, plasmid and phage DNA. In: Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (eds) Genetic manipulation of Streptomyces: a laboratory manual. F. Crowe and Sons, Norwich, pp 79–80

    Google Scholar 

  • Ivanova EP, Mikhailov VV (2001) A new family, Alteromonadaceae fam. nov., including marine proteobacteria of the genera Alteromonas, Pseudoalteromonas, Idiomarina and Colwellia. Mikrobiol 70:15–23 in Russian

    CAS  Google Scholar 

  • Ivanova EP, Flavier S, Christen R (2004) Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54:1773–1788. doi:10.1099/ijs.0.02997-0

    Article  PubMed  CAS  Google Scholar 

  • Ivanova EP, Bowman JP, Lysenko AM, Zhukova NV, Gorshkova NM, Sergeev AF, Mikhailov VV (2005) Alteromonas addita sp. nov. Int J Syst Evol Microbiol 55:1065–1068. doi:10.1099/ijs.0.63521-0

    Article  PubMed  CAS  Google Scholar 

  • Jeon CO, Lim JM, Park DJ, Kim CJ (2005) Salinimonas chungwhensis gen. nov., sp. nov., a moderately halophilic bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 55:239–243. doi:10.1099/ijs.0.63279-0

    Article  PubMed  CAS  Google Scholar 

  • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120. doi:10.1007/BF01731581

    Article  PubMed  CAS  Google Scholar 

  • Kluge AG, Farris FS (1969) Quantitative phyletics and the evolution of anurans. Syst Zool 18:1–32. doi:10.2307/2412407

    Article  Google Scholar 

  • Komagata K, Suzuki K (1987) Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19:161–203

    Article  CAS  Google Scholar 

  • Martínez-Checa F, Bejar V, Llamas I, del Moral A, Quesada E (2005) Alteromonas hispanica sp. nov., a polyunsaturated-fatty-acid-producing, halophilic bacterium isolated from Fuente de Piedra, southern Spain. Int J Syst Evol Microbiol 55:2385–2390. doi:10.1099/ijs.0.63809-0

    Article  PubMed  CAS  Google Scholar 

  • Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167

    Article  CAS  Google Scholar 

  • Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241. doi:10.1016/0167-7012(84)90018-6

    Article  CAS  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    PubMed  CAS  Google Scholar 

  • Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101, MIDI Inc., Newark

  • Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607–654

    Google Scholar 

  • Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standard. Microbiol Today 33:152–155

    Google Scholar 

  • Tamaoka J, Katayama-Fujimura Y, Kuraishi H (1983) Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54:31–36

    CAS  Google Scholar 

  • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599. doi:10.1093/molbev/msm092

    Article  PubMed  CAS  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882. doi:10.1093/nar/25.24.4876

    Article  PubMed  CAS  Google Scholar 

  • Van Trappen S, Tan TL, Yang J, Mergaert J, Swings J (2004) Alteromonas stellipolaris sp. nov., a novel, budding, pros-thecate bacterium from Antarctic seas, and emended description of the genus Alteromonas. Int J Syst Evol Microbiol 54:1157–1163. doi:10.1099/ijs.0.02862-0

    Article  PubMed  CAS  Google Scholar 

  • Vandecandelaere I, Nercessian O, Segaert E, Achouak W, Mollica A, Faimali M, Vos PD, Vandamme P (2008) Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm, emended description of Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980). Int J Syst Evol Microbiol 58:2589–2596. doi:10.1099/ijs.0.65691-0

    Article  PubMed  CAS  Google Scholar 

  • Ventosa A, Quesada E, Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1982) Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128:1959–1968

    Google Scholar 

  • Xiao HD, Chen YG, Liu ZX, Huang K, Li WJ, Cui XL, Zhang L, Yi LB (2009) Phylogenetic diversity of cultivable bacteria associated with a sea anemone from coast of the Naozhou Island in Zhanjiang, China. Acta Microbiol Sin 49:246–250

    CAS  Google Scholar 

  • Yi H, Bae KS, Chun J (2004) Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii. Int J Syst Evol Microbiol 54:571–576. doi:10.1099/ijs.0.02798-0

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Kim IG, Kang KH, Oh TK, Park YH (2003) Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea. Int J Syst Evol Microbiol 53:1625–1630. doi:10.1099/ijs.0.02536-0

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Yeo SH, Oh TK, Park YH (2004) Alteromonas litorea sp. nov., a slightly halophilic bacterium isolated from an intertidal sediment of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54:1197–1201. doi:10.1099/ijs.0.63079-0

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by grants from the National Natural Science Foundation of China (NSFC) (30860013, 30860002, 30660004), Jishou University (jsdxkyzz200811), the Ministry of Science and Technology, PR China (2006BAE01A01-9; 863 Program, no. 2007AA021306), Key Projects of International Cooperation (2007DFB31620) and Yunnan University (2008YB005). We are grateful to Mr Ke Huang for his excellent technical assistance.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Wen-Jun Li or Yan-Qi Liu.

Additional information

The authors Yi-Guang Chen and Huai-Dong Xiao have contributed equally to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Chen, YG., Xiao, HD., Tang, SK. et al. Alteromonas halophila sp. nov., a new moderately halophilic bacterium isolated from a sea anemone. Antonie van Leeuwenhoek 96, 259–266 (2009). https://doi.org/10.1007/s10482-009-9341-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10482-009-9341-8

Keywords

Navigation