Abstract
The taxonomy of Bambusoideae is in a state of flux and phylogenetic studies are required to help resolve systematic issues. Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F intergenic spacer, atpB-rbcL intergenic spacer, rps16 intron, and matK, was used to study the phylogenetic relationships among the bamboos in general and the woody bamboos in particular. Within the BEP clade (Bambusoideae s.s., Ehrhartoideae, Pooideae), Pooideae were resolved as sister to Bambusoideae s.s. Tribe Bambuseae, the woody bamboos, as currently recognized were not monophyletic because Olyreae, the herbaceous bamboos, were sister to tropical Bambuseae. Temperate Bambuseae were sister to the group consisting of tropical Bambuseae and Olyreae. Thus, the temperate Bambuseae would be better treated as their own tribe Arundinarieae than as a subgroup of Bambuseae. Within the tropical Bambuseae, neotropical Bambuseae were sister to the palaeotropical and Austral Bambuseae. In addition, Melocanninae were found to be sister to the remaining palaeotropical and Austral Bambuseae. We discuss phylogenetic and morphological patterns of diversification and interpret them in a biogeographic context.
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References
Andersson L, Chase MW (2001) Phylogeny and classification of Marantaceae. Bot J Linn Soc 135:275–287
Ascherson P, Graebner P (1902) Synopsis der mitteleuropäischen Flora. Leipzig 2:705–795
Asmussen CB, Chase MW, Baker WJ, Dransfield J (2000) Phylogeny of the palm family (Arecaceae) based on rps16 intron and trnL-trnF plastid DNA sequences. In: Wilson KL, Morrison DA (eds) Monocots: systematics and evolution. CSIRO, Collingwood, pp 525–535
Bouchenak-Khelladi Y, Salamin N, Savolainen V, Forest F, van der Bank M, Chase MW, Hodkinson TR (2008) Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling. Mol Phylogenet Evol 47:488–505
Chase MW, Hills HH (1991) Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40:215–220
Chia LC, Fung HL (1980) On the validity of the genera Sinocalamus McClure and Lingnania McClure. Acta Phytotaxon Sin 18:211–216
Clark LG (1995) Bamboo systematics today. Eur Bamboo Soc J 6:40–46
Clark LG, Zhang W, Wendel JF (1995) A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Syst Bot 20:436–460
Clark LG, Dransfield S, Triplett JK, Sánchez-Ken JG (2007) Phylogenetic relationships among the one-flowered, determinate genera of Bambuseae (Poaceae: Bambusoideae). Aliso 23:315–332
Clayton WD, Renvoize SA (1986) Genera Graminum, grasses of the world. Kew Bull Addit Ser XIII. Her Majesty's Stationery Office, London
Clayton WD, Harmann KT, Williamson H (2008) GrassBase—the online world grass flora. Royal Botanic Gardens, Kew. Online at http://www.rbgkew.org.uk/data/grasses-db/. Accessed 27 Sep 2008
Cuènoud P, Savolainen V, Chatrou LW, Powell M, Grayer RJ, Chase MW (2002) Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. Am J Bot 89:132–144
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull Bot Soc Am 19:11–15
Dransfield S (1981) The genus Dinochloa (Gramineae-Bambusoideae) in Sabah. Kew Bull 36:613–633
Dransfield S (2000a) Notes on ‘Pek’ and ‘Chote’, members of the genus Vietnamosasa (Poaceae-Bambusoideae) in Thailand. Thai Forest Bull, Bot 28:163–176
Dransfield S (2000b) Temochloa, a new bamboo genus (Poaceae-Bambusoideae) from Thailand. Thai Forest Bull, Bot 28:179–182
Dransfield S, Widjaja EA (1995) Plant resources of South-East Asia No. 7: Bamboos. Backhuys, Leiden
Dransfield S, Wong KM (1996) Temburongia, a new genus of bamboo (Gramineae: Bambusoideae) from Brunei. Sandakania 7:49–58
Friar E, Kochert G (1994) A study of genetic variation and evolution of Phyllostachys (Bambusoideae: Poaceae) using nuclear restriction fragment length polymorphisms. Theor Appl Genet 89:265–270
Gelman A, Rubin D (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7:457–511
Gielis J, Everaert I, De Loose M (1997) Genetic variability and relationships in Phyllostachys using random amplified polymorphic DNA. In: Chapman GP (ed) The bamboos. Linn Soc Symp Ser 19:107–124
GPWG (Grass Phylogeny Working Group) (2001) Phylogeny and subfamily classification of the grasses (Poaceae). Ann Mo Bot Gard 88(3):373–430
Hilu KW, Alice LA, Liang HP (1999) Phylogeny of Poaceae inferred from matK sequences. Ann Mo Bot Gard 86:835–851
Hodkinson TR, Renvoize SA, Ní Chonghaile G, Stapleton CMA, Chase MW (2000) A comparison of ITS nuclear rDNA sequence data and AFLP markers for phylogenetic studies in Phyllostachys (Bambusoideae, Poaceae). J Plant Res 113:259–269
Hodkinson TR, Chase MW, Lledo D, Salamin N, Renvoize SA (2002) Molecular phylogeny of Miscanthus s.l., Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) using DNA sequences from the ITS nuclear ribosomal DNA and the plastid trnL-F regions. J Plant Res 115:381–392
Hodkinson TR, Salamin N, Chase MW, Bouchenak-Khelladi Y, Renvoize SA, Savolainen V (2007a) Large trees, supertrees, and diversification of the grass family. Aliso 23:248–258
Hodkinson TR, Waldren S, Parnell JAN, Kelleher CT, Salamin K, Salamin N (2007b) DNA banking for plant breeding, biotechnology and biodiversity evaluation. J Plant Res 120:17–29
Holttum RE (1958) The bamboos of the Malay Peninsula. Gard Bull Singapore 16:1–135
Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755
Huelsenbeck JP, Bull JJ, Cunningham CW (1996) Combining data in phylogenetic analysis. Trends Ecol Evol 11:152–158
Johnson LA, Soltis DE (1994) matK DNA sequences and phylogenetic reconstruction in Saxifragaceae sensu stricto. Syst Bot 19:143–156
Judziewicz EJ, Clark LG, Londoño X, Stern MJ (1999) American bamboos. Smithsonian Institution Press, Washington and London
Kelchner SA, Clark LG (1997) Molecular evolution and phylogenetic utility of the chloroplast rpl16 intron in Chusquea and the Bambusoideae (Poaceae). Mol Phylogenet Evol 8:385–397
Li DZ (1997) The flora of China Bambusoideae Project-problems and current understanding of bamboo taxonomy in China. In: Chapman GP (ed) The bamboos, vol. 19. Linnean Society Symposium Series, pp 61–81
Li DZ (1998) Taxonomy and biogeography of the Bambuseae (Gramineae: Bambusoideae). In: Rao AN, Rao VR (eds) Proceedings of training course/workshop 10–17 May 1998, Kunming and Xishuanbanna, Yunnan, China, pp 14–23
Li DZ, Stapleton CMA (2006) Melocalamus Bentham. Fl China 22:48–49
Li DZ, Xue JR (1997) The biodiversity and conservation of bamboos in Yunnan, China. In: Chapman GP (ed) The bamboos, vol. 19. Linnean Society Symposium Series, pp 83–94
Li DZ, Wang ZP, Zhu ZD, Xia NH, Jia LZ, Guo ZH, Yang GY, A SCM (2006) Tribe Bambuseae. Fl China 22:11–180
Liang H, Hilu KW (1996) Application of the matK gene sequences to grass systematics. Can J Bot 74:125–134
McClure FA (1940) New genera and species of Bambusaceae from eastern Asia. Lingnan Univ Sci Bull 9:66–67
McClure FA (1966) The bamboos: a fresh perspective. Harvard University Press, Cambridge
Molvray M, Kores PJ, Chase MW (2000) Polyphyly of mycoheterotrophic orchids and functional influences on floral and molecular characters. In: Wilson KL, Morrison DA (eds) Monocots: systematics and evolution. CSIRO, Collingwood, pp 441–448
Ní Chonghaile G (2002) Molecular systematics of the woody bamboos (Bambuseae). Ph.D. thesis, University of Dublin, Trinity College, Dublin
Ohrnberger D (1999) The bamboos of the world: annotated nomenclature and literature of the species and the higher and lower taxa. Elsevier Science, Amsterdam
Oxelmann B, Liden M, Berglund D (1997) Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Syst Evol 206:257–271
Plummer M, Best N, Cowles K, Vines K (2006) CODA: convergence diagnosis and output analysis for MCMC. R News 6:7–11
Raizada MB (1948) A little-known Burmese bamboo. Indian For 74:7–10
Reeves G, Chase MW, Goldblatt P, Rudall P, Fay MF, Cox AV, Lejeune B, Sousa-Chies T (2001) Molecular systematics of Iridaceae: evidence from four plastid DNA regions. Am J Bot 88:2074–2087
Salamin N, Hodkinson TR, Savolainen V (2002) Building supertrees: an empirical assessment using the grass family (Poaceae). Syst Biol 51:136–150
Samuel R, Pinsker W, Kiehn M (1997) Phylogeny of some species of Cyrtandra (Gesneriaceae) inferred from the atpB/rbcL cpDNA intergene region. Bot Acta 110:503–510
Soderstrom TR, Ellis RP (1987) The position of bamboo genera and allies in a system of grass classification. In: Soderstrom TR, Hilu KW, Campbell CS, Barkworth ME (eds) Grass systematics and evolution. Smithsonian Institution Press, Washington, D.C., pp 225–238
Soltis DE, Soltis PS (1998) Choosing and approach and an appropriate gene for phylogenetic analysis. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants II, DNA sequencing. Kluwer Academic, Dordrecht, pp 1–41
Stapleton CMA (1997) The morphology of woody bamboos. In: Chapman GP (ed) The bamboos, vol. 19. Linnean Society Symposium Series, pp 251–267
Stapleton CMA, Xia NH (1997) A new combination in Bambusa (Gramineae-Bambusoideae). Kew Bull 52:235–238
Sun Y, Xia NH, Lin R (2005) Phylogenetic analysis of Bambusa (Poaceae: Bambusoideae) based on Internal Transcribed Spacer sequences of nuclear ribosomal DNA. Biochem Genet 43:603–612
Sungkaew S, Teerawatananon A, Parnell JAN, Stapleton CMA, Hodkinson TR (in press) Phuphanochloa, a new bamboo genus (Poaceae: Bambusoideae) from Thailand. Kew Bull
Swofford DL (1998) Phylogenetic analysis using Parsimony (PAUP) version 4.0. Sinauer Associates, Sunderland
Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105–1109
Watanabe M, Ito M, Kurita S (1994) Chloroplast DNA phylogeny of Asian Bamboos (Bambusoideae, Poaceae) and its systematic implication. J Plant Res 107:253–261
Widjaja EA (1997) New taxa in Indonesian bamboos. Reinwardtia 11:57–152
Wong KM (1995) The bamboos of Peninsular Malaysia. Malayan Forest Records No. 41, Forest Research Institute Malaysia (FRIM), Kuala Lumpur, Malaysia
Wong KM (2005) Mullerochloa, a new genus of bamboo (Poaceae: Bambusoideae) from north-east Australia and notes on the circumscription of Bambusa. Blumea 50:425–441
Xia NH, Stapleton CMA (1997) A new combination in Dendrocalamus (Gramineae: Bambusoideae). Kew Bull 52:483–485
Yang HQ, Peng S, Li DZ (2007) Generic delimitations of Schizostachyum and its allies (Gramineae: Bambusoideae) inferred from GBSSI and trnL-F sequence phylogenies. Taxon 56:45–54
Zhang W (2000) Phylogeny of the grass family (Poaceae) from rpl16 intron sequence data. Mol Phylogenet Evol 15:135–146
Zhang W, Clark LG (2000) Phylogeny of classification of the Bambusoideae (Poaceae). In: Jacobs SWL, Everett JE (eds) Grasses: systematics and evolution. CSIRO, Collingwood, pp 35–42
Acknowledgements
We thank several people who helped or provided us with the plant material used in this study: Dr Soejatmi Dransfield, Dr Wang Hong, Mr Gareth Hodkinson, Dr Surrey Jacobs, Dr Wong Khoon Meng, Dr Ruth Kiew, Dr Duangchai Sookchaloem, and Ms Atchara Teerawatananon. We are grateful to Dr Soejatmi Dransfield who has contributed significantly to this paper. Special thanks to Dr Vincent Savolainen, Dr Mark Chase, and Mr Laszlo Csiba who helped with the molecular work. This work was supported by: the TRF/BIOTEC Special Program for Biodiversity Research and Training grant T_147003; a Trinity College Dublin, Eire, Postgraduate Studentship and the Trinity College Postgraduate Travel Reimbursement Fund; and the Faculty of Forestry, Kasetsart University, Bangkok, Thailand.
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Sungkaew, S., Stapleton, C.M.A., Salamin, N. et al. Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.. J Plant Res 122, 95–108 (2009). https://doi.org/10.1007/s10265-008-0192-6
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DOI: https://doi.org/10.1007/s10265-008-0192-6