Abstract
Anaerobic digestion of lignocellulosic biomass is limited by inefficient hydrolysis of recalcitrant substrates, leading to low biogas yields where bacteria can be utilized successfully. In this study, we have chosen ten cellulose-degrading bacteria from active anaerobic slurry identified as Enterobacter ludwigii, Klebsiella pneumoniae, Pantoea agglomerans, Bacillus subtilis, Bacillus pumilus, Bacillus anthracis, Pseudomonas sp., Enterobacteriaceae bacterium Staphylococcus warneri, and Bacillus safensis; among them, E. ludwigii was found to be the most potent having an endoglucanase gene in the genome. The growth conditions of E. ludwigii were further optimized using Response Surface Methodology that designated 35 °C temperature, 6.5 pH, 5 % carboxymethylcellulose, 5 % yeast extract, 1 % ammonium nitrate as optimum growth conditions. The optimized growth module found to accelerate cellulase production at both transcription and translation level that in turn enhanced biogas production inside anaerobic digester as well. Finally, the growth-cellulase production relationship could be helpful in efficient industrial applications.
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Asis CA, Adachi K (2003) Isolation of endophytic diazotroph Pantoea agglomerans and nondiazotroph Enterobacter asburiae from sweet potato stem in Japan. Lett Appl Microbiol 38:19–23
Bas D, Boyaci IH (2007) Modeling and optimization I: usability of response surface methodology. J Food Eng 78:836–845
Basak B, Bhunia B, Mukherjee S, Dey A (2013) Optimization of physicochemical parameters for phenol biodegradation by Candida tropicalis PHB5 using Taguchi methodology. Desalin Water Treat 51:6846–6862
Bezerra MA, Santelli RE, Oliveira EP, Villar LS, Escaleira LA (2008) Response surface methodology (RSM) as a tool for optimization in analytical chemistry. Talanta 76:965–977
Chakrabarty S, Boksh FIMM, Chakraborty A (2013) Economic viability of biogas and green self-employment opportunities. Renew Sustain Energy Rev 28:757–766
Christensen WB (1946) Urea decomposition as means of differentiating Proteus and paracolon cultures from each other and from Salmonella and Shigella types. J Bacteriol 52:461–466
CLSI (2006) Performance standards for antimicrobial disk susceptibility tests. Approved standard, 9th edn., CLSI document M2-A9. CLSI, Wayne
Deka D, Bhargavi P, Sharma A, Goyal D, Jawed M, Goyal A (2011) Enhancement of cellulase activity from a new strain of Bacillus subtilis by medium optimization and analysis with various cellulosic Substrates. Enzyme Res. doi:10.4061/2011/151656
Deka D, Das SP, Sahoo N, Das D, Jawed M, Goyal D, Goyal A (2013) Enhanced Cellulase Production from Bacillus subtilis by Optimizing Physical Parameters for Bioethanol Production. ISRN Biotechnol. doi:10.5402/2013/965310
Dhadse S, Kankal NC, Kumari B (2012) Study of diverse methanogenic and non methanogenic bacteria used for the enhancement of biogas production. Int J LifeSci Biotechnol Pharm Res 1:176–191
Dong J, Mandenius CF, Lubberstedt M, Urbaniak T, Nussler AKN, Knobeloch D, Gerlach JC, Zeilinger K (2008) Evaluation and optimization of hepatocyte culture media factors by design of experiments (DoE) methodology. Cytotechnology 57:251–261
Duan C-J, Feng J-X (2010) Mining metagenomes for novel cellulase genes. Biotechnol Lett 32:1765–1775
Garcia de Salamone IE, Dobereiner J, Urquiaga S, Boddey RM (1996) Biological nitrogen fixation in Azospirillum strain- maize genotype associations as evaluated by 15N isotope dilution technique. Biol Fert Soils 23:249–256
Gavrilescu M (2002) Engineering concerns and new developments in anaerobic waste-water treatment. Clean Technol Environ Policy 3:346–362
Goswami R, Mukherjee S, Rana VS, Saha DR, Raman R, Padhy PK, Mazumder S (2015) Isolation and characterization of arsenic-resistant bacteria from the surface-waters of contaminated water-bodies in West Bengal, India. Geomicrobiol J 32:17–26
Haruta S, Cui Z, Huang Z, Li M, Ishii M, Igarashi Y (2002) Construction of a stable microbial community with high cellulose-degradation ability. Appl Microbiol Biotechnol 59:529–534
Hoffmann H, Stindl S, Stumpf A, Mehlen A, Monget D, Heesemann J, Schleifer KH, Roggenkamp A (2005) Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance. Syst Appl Microbiol 28:206–212
Immanuel G, Dhanusha R, Prema P, Palavesam A (2006) Effect of different growth parameters on endoglucanase enzyme activity by bacteria isolated from coir retting effluents of estuarine environment. Int J Environ Sci Technol 3:25–34
Jalasutram V, Kataram S, Gandu B, Anupoju GR (2013) Single cell protein production from digested and undigested poultry litter by Candida utilis: optimization of process parameters using response surface methodology. Clean Technol Environ Policy 15:265–273
Kume S, Fujio Y (1990) Digestion of municipal sewage sludge by a mixture of thermophilic Bacilli and their culture extract. J Gen Appl Microbiol 36:189–194
Liang Y-L, Zhang Z, Wu M, Wu Y, Feng J-X (2014) Isolation, screening, and identification of cellulolytic bacteria from natural reserves in the subtropical region of China and optimization of cellulase production by Paenibacillus terrae ME27-1. BioMed Res Int. doi:10.1155/2014/512497
Mager J, Kuczynski M, Schatzberg G, Avi-Dor Y (1965) Turbidity changes in bacterial suspensions in relation to osmotic pressure. J Gen Microbiol 14:69–75
Maki M, Leung KT, Qin W (2009) The prospects of cellulase-producing bacteria for the bioconversion of lignocellulosic biomass. Int J Biol Sci 5:500–516
Mathew AK, Bhui I, Banerjee SN, Goswami R, Shome A, Chakraborty AK, Balachandran S, Chaudhury S (2015) Biogas production from locally available aquatic weeds of Santiniketan through anaerobic digestion. Clean Technnol Environ Policy 17:1681–1688
Mukherjee S, Bandyopadhayay B, Basak B, Mandal N, Dey A, Mandal B (2012) An improved method of optimizing the extraction of polyphenol oxidase from potato (Solanum tuberosum L.) Peel. Not Sci Biol 4:98–107
Mukherjee N, Mukherjee S, Saini P, Roy P, Sinha Babu SP (2014a) Antifilarial effects of polyphenol rich ethanolic extract from the leaves of Azadirachta indica through molecular and biochemical approaches describing reactive oxygen species (ROS) mediated apoptosis of Setaria cervi. Exp Parasitol 136:41–58
Mukherjee S, Mandal N, Dey A, Mondal B (2014b) An approach towards optimization of the extraction of polyphenolic antioxidants from ginger (Zingiber officinale). J Food Sci Technol 51:3301–3308
Mukherjee S, Mukherjee N, Roy P, Saini P, Sinha Babu SP (2015) An approach towards optimization of the influential growth determinants of opportunistic yeast isolate Pichia guilliermondii. Prep Biochem Biotechnol. doi:10.1080/10826068.2015.1045614
Mulka R, Szulczewski W, Szlachta J, Prask H (2015) The influence of carbon content in the mixture of substrates on methane production. Clean Technnol Environ Policy. doi:10.1007/s10098-015-1057-z
Myers RH, Montgomery DC (2002) Response surface methodology: Process and product optimization using designed experiments, 2nd edn. Wiley, New York
Navarro AR, Rubio MC, Maldonado MC (2012) A combined process to treat lemon industry wastewater and produce biogas. Clean Technol Environ Policy 14:41–45
Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York
Nelson N (1944) A photometric adaptation of the Somogyi method for the determination of glucose. J Biol Chem 153:375–380
Ni J, Takehara M, Watanabe H (2010) Identification of activity related amino acid mutations of a GH9 termite cellulase. Bioresour Technol 101:6438–6443
Pereyra LP, Hiibel SR, Riquelme MVP, Reardon KF, Pruden A (2010) Detection and quantification of functional genes of cellulose-degrading, fermentative, and sulfate-reducing bacteria and methanogenic archaea. Appl Environ Microbiol 76:2192–2202
Pourramezan Z, Ghezelbash GR, Romani B, Ziaei S, Hedayatkhah A (2012) Screening and identification of newly isolated cellulose-degrading bacteria from the gut of xylophagous termite Microcerotermes diversus (Silvestri). Mikrobiologiia 81:796–802
Rastogi G, Bhalla A, Adhikari A, Bischoff KM, Hughes SR, Christopher LP, Sani RK (2010) Characterization of thermostable cellulases produced by Bacillus and Geobacillus strains. Bioresour Technol 101:8798–8806
Rezaei F, Xing D, Wagner R, Regan JM, Richard TL, Logan BE (2009) Simultaneous cellulose degradation and electricity production by Enterobacter cloacae in a microbial fuel cell. Appl Environ Microbiol 75:3673–3678
Sadhu S, Saha P, Sen SK, Mayilraj S, Maiti TK (2013) Production, purification and characterization of a novel thermotolerant endoglucanase (CMCase) from Bacillus strain isolated from cow dung. SpringerPlus. doi:10.1186/2193-1801-2-10
Singh S, Moholkar VS, Goyal A (2013) Isolation, identification, and characterization of a cellulolytic Bacillus amyloliquefaciens Strain SS35 from Rhinoceros dung. ISRN Microbiol. doi:10.1155/2013/728134
Sukumaran RK, Singhania RR, Pandey A (2005) Microbial cellulases-production, applications and challenges. J Sci Ind Res 64:832–844
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
Vasan PT, Piriya PS, Prabhu DIG, Vennison SJ (2011) Cellulosic ethanol production by Zymomonas mobilis harboring an endoglucanase gene from Enterobacter cloacae. Bioresour Technol 102:2585–2589
Wang X, Haruta S, Wang P, Ishii M, Igarashi Y, Cui Z (2006) Diversity of a stable enrichment culture which is useful for silage inoculant and its succession in alfalfa silage. FEMS Microbiol Ecol 57:106–115
Wilson DB (2011) Microbial diversity of cellulose hydrolysis. Curr Opin Microbiol 14:259–263
Wongwilaiwalin S, Rattanachomsri U, Laothanachareon T, Eurwilaichitr L, Igarashi Y, Champreda V (2010) Analysis of a thermophilic lignocellulose degrading microbial consortium and multi-species lignocellulolytic enzyme system. Enzyme Microb Technol 47:283–290
Acknowledgments
Sincere thanks are due to DST (DST/SEED/INDO-UK/002/2011/VBU) and UGC, Govt. of India for financial support and research fellowships to RG, AKC, and SM. Thanks to Dr. S.N. Banerjee for valuable suggestions. Thanks are due to CRNN, University of Calcutta, India for SEM studies.
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Ramansu Goswami and Suprabhat Mukherjee have contributed equally to this work.
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Goswami, R., Mukherjee, S., Chakraborty, A.K. et al. Optimization of growth determinants of a potent cellulolytic bacterium isolated from lignocellulosic biomass for enhancing biogas production. Clean Techn Environ Policy 18, 1565–1583 (2016). https://doi.org/10.1007/s10098-016-1141-z
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DOI: https://doi.org/10.1007/s10098-016-1141-z