Abstract
Genomic information about Muscovy duck parvovirus is still limited. In this study, the genome of the pathogenic MDPV strain YY was sequenced. The full-length genome of YY is 5075 nucleotides (nt) long, 57 nt shorter than that of strain FM. Sequence alignment indicates that the 5′ and 3′ inverted terminal repeats (ITR) of strain YY contain a 14-nucleotide-pair deletion in the stem of the palindromic hairpin structure in comparison to strain FM and FZ91-30. The deleted region contains one “E-box” site and one repeated motif with the sequence “TTCCGGT” or “ACCGGAA”. Phylogenetic trees constructed based the protein coding genes concordantly showed that YY, together with nine other MDPV isolates from various places, clustered in a separate branch, distinct from the branch formed by goose parvovirus (GPV) strains. These results demonstrate that, despite the distinctive deletion, the YY strain still belongs to the classical MDPV group. Moreover, the deletion of ITR may contribute to the genome evolution of MDPV under immunization pressure.
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This work was supported by the National Natural Science Foundation of China (no. 31572551) and by a project funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions.
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The authors declare that they have no competing interests.
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The procedure for inoculation of fertilized Muscovy duck eggs was approved by the Animal Care and Use Committee of Yangzhou University and performed in accordance with the “Guidelines for Experimental Animals” of the Ministry of Science and Technology (Beijing, China). No specific permissions were required for these locations/activities.
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Wang, J., Huang, Y., Zhou, M. et al. Analysis of the genome sequence of the pathogenic Muscovy duck parvovirus strain YY reveals a 14-nucleotide-pair deletion in the inverted terminal repeats. Arch Virol 161, 2589–2594 (2016). https://doi.org/10.1007/s00705-016-2946-0
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DOI: https://doi.org/10.1007/s00705-016-2946-0