Abstract
The genome segment S5 of rice black-streaked dwarf virus (genus Fijivirus, family Reoviridae) is functionally bicistronic in infected plants. It has a conserved second ORF (P5-2) partially overlapping the major ORF in a different reading frame, but its function remains unknown. P5-2 was detected in infected plants, but not in purified viral particles by Western blotting, indicating that it is a non-structural protein. In immunoelectron microscopy, polyclonal antibodies against P5-2 specifically labelled chloroplasts of infected rice plants. When P5-2 fused with green fluorescent protein was transiently expressed in leaves of Nicotiana benthamiana, fluorescence was also co-localized with chloroplasts. Experiments with deletion mutants of P5-2 showed that its N-terminal part was responsible for its targeting to chloroplasts.
Similar content being viewed by others
References
Attoui H, Mertens PPC, Becnel J, Belaganahalli S, Bergoin M et al (2012) Family Reoviridae. In: King AMQ, Adams MJ, Carstens EJ, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, London, pp 541–637
Boccardo G, Milne RG (1984) Plant reovirus group. CMI/AAB, Descriptions of Plant Viruses, No. 294, Association of Applied Biologists, Wellesbourne, Warwick
Zhang HM, Yang J, Chen JP, Adams MJ (2008) A black-streaked dwarf disease on rice in China is caused by a novel fijivirus. Arch Virol 153:1893–1898
Zhou GH, Wen JJ, Cai DJ, Li P, Xu DL, Zhang SG (2008) Southern rice black-streaked dwarf virus: A new proposed Fijivirus species in the family Reoviridae. Chin Sci Bull 53:3677–3685
Zhang HM, Chen JP, Adams MJ (2001) Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf virus from China provides the complete genome. Arch Virol 146:2331–2339
Zhang HM, Chen JP, Lei JL, Adams MJ (2001) Sequence analysis shows that a dwarfing disease on rice, wheat and maize in China is caused by Rice black-streaked dwarf virus. Eur J Plant Pathol 107:563–567
Wang ZH, Fang SG, Xu JL, Sun LY, Li DW, Yu JL (2003) Sequence analysis of the complete genome of rice black-streaked dwarf virus isolated from maize with rough dwarf disease. Virus Genes 27:163–168
Wang Q, Yang J, Zhou GH, Zhang HM, Chen JP, Adams MJ (2010) The complete genome sequence of two isolates of Southern rice black-streaked dwarf virus, a new member of the genus Fijivirus. J Phytopathol 158:733–737
Xue J, Li J, Zhang HM, Yang J, Lv MF, Gao BD, Chen JP (2014) Molecular characterization of Southern rice blacked-streaked dwarf virus (SRBSDV) from Vietnam. J Phytopathol 162:349–358
Isogai M, Uyeda I, Lee BC (1998) Detection and assignment of proteins encoded by rice black streaked dwarf fijivirus S7, S8, S9 and S10. J Gen Virol 79(6):1487–1494
Liu HJ, Wei CH, Zhong YH, Li Y (2007) Rice black-streaked dwarf virus minor core protein P8 is dimeric protein and represses transcription in tobacco protoplasts. FEBS Lett 581:2534–2540
Liu HJ, Wei CH, Zhong YW, Li Y (2007) Rice black-streaked dwarf virus outer capsid protein P10 has self-interactions and forms oligomeric complexes in solution. Virus Res 127:34–42
Wang Q, Tao T, Zhang YJ, Wu WQ, Li DW, Yu JL, Han CG (2011) Rice black-streaked dwarf virus P6 self-interacts to form punctate, viroplasm-like structures in the cytoplasm and recruits viroplasm-associated protein P9-1. Virol J 8:24
Zhang LD, Wang ZH, Wang XB, Zhang WH, Li DW, Han CG, Zhai YF, Yu JL (2005) Two virus-encoded RNA silencing suppressors, P14 of Beet necrotic yellow vein virus and S6 of Rice black streak dwarf virus. Chin Sci Bull 50:305–310W
Jia D, Chen H, Zheng A, Chen Q, Liu Q, Xie L, Wu Z, Wei T (2012) Development of an insect vector cell culture and RNA interference system to investigate the functional role of fijivirus replication protein. J Virol 86:5800–5807
Zhang C, Liu Y, Liu L, Lou Z, Zhang H, Miao H, Hu X, Pang Y, Qiu B (2008) Rice black streaked dwarf virus P9-1, an alpha-helical protein, self-interacts and forms viroplasms in vivo. J Gen Virol 89:1770–1776
Akita F, Higashiura A, Shimizu T, Pu Y, Suzuki M, Uehara-Ichiki T, Sasaya T, Kanamaru S, Arisaka F, Tsukihara T, Nakagawa A, Omura T (2012) Crystallographic analysis reveals octamerization of viroplasm matrix protein P9-1 of Rice black streaked dwarf virus. J Virol 86:746–756
Silvestri LS, Taraporewala ZF, Patton JT (2004) Rotavirus replication: plus-sense templates for double-stranded RNA synthesis are made in viroplasms. J Virol 78:7763–7774
Netherton C, Moffat K, Brooks E, Wileman T (2007) A guide to viral inclusions, membrane rearrangements, factories, and viroplasm produced during virus replication. Adv Virus Res 70:101–182
Firth AE, Atkins JF (2009) Analysis of the coding potential of the partially overlapping 3’ ORF in segment 5 of the plant fijiviruses. Virol J 6:32
Yang J, Zhang HM, Ying L, Li J, Lv MF, Xie L, Li PP, Liu XY, Dai LY, Chen JP (2014) Rice black-streaked dwarf virus genome segment S5 is a bicistronic mRNA in infected plants. Arch Virol 159:307–314
Li J, Xue J, Zhang HM, Yang J, Lv MF, Xie L, Meng Y, Li PP, Chen JP (2013) Interactions between the P6 and P5-1 proteins of southern rice black-streaked dwarf fijivirus in yeast and plant cells. Arch Virol 158:1649–1659
Uyeda I, Bong-Choon L, Ando Y (1998) Reovirus isolation and RNA extraction. In: Foster GD, Taylor SC (eds) Methods in molecular biology, vol 81., Plant virology protocols: from virus isolation to transgenic resistanceHumana Press, Totowa, pp 65–75
Yang J, Zhang HM, Chen JP, Dai LY (2007) Prekaryotic expression antiserum prepara tion and some properties of p8 prote in of Rice black-streaked dwarf Fijivirus. Acta Phytophylacica Sin 34:252–256
Curtis MD, Grossniklaus U (2003) A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol 133:462–469
Sparkes IA, Runions J, Kearns A, Hawes C (2006) Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nat Protoc 1:2019–2025
Distéfano AJ, Hopp HE, del Vas M (2005) Sequence analysis of genome segments S5 and S10 of Mal de Rio Cuarto virus (Fijivirus, Reoviridae). Arch Virol 150(6):1241–1248
Maroniche GA, Mongelli VC, Llauger G, Alfonso V, Taboga O, del Vas M (2012) In vivo subcellular localization of Mal de Río Cuarto virus (MRCV) non-structural proteins in insect cells reveals their putative functions. Virology 430:81–89
Bédard J, Jarvis P (2005) Recognition and envelope translocation of chloroplast preproteins. J Exp Bot 56(419):2287–2320
Emanuelsson O, Nielsen H, von Heijne G (1999) ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci 8(5):978–984
Chou KC, Shen HB (2008) Cell-PLoc: a package of web-servers for predicting subcellular localization of proteins in various organisms. Nat Protoc 3:153–162
Prod’homme D, Jakubiec A, Tournier V, Drugeon G, Jupin I (2003) Targeting of turnip yellow mosaic virus 66K replication protein to chloroplast envelope is mediated by the 140K protein. J Virol 77(17):9124–9135
Acknowledgments
This work was funded by National Science and Technology Support Program (2012BAD19B03), the China 973 Program (2010CB126203), the Special Fund for Agro-Scientific Research in the Public Interest of China (201003031), 863 program (2007AA10Z414), the Zhejiang Provincial Science and Technology Project (2010C12027), and the Zhejiang Provincial Foundation for Natural Science (Z305165 and Y3090657). We thank Professor M. J. Adams, Stevenage, UK, for help in correcting the English of the manuscript.
Author information
Authors and Affiliations
Corresponding authors
Rights and permissions
About this article
Cite this article
Liu, XY., Yang, J., Xie, L. et al. P5-2 of rice black-streaked dwarf virus is a non-structural protein targeted to chloroplasts. Arch Virol 160, 1211–1217 (2015). https://doi.org/10.1007/s00705-015-2382-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00705-015-2382-6