Summary.
Enteric caliciviruses, noroviruses, and sapoviruses are emerging path- ogens responsible for diarrhea or gastroenteritis in their respective hosts. In this study, swine enteric caliciviruses were detected in ten samples of intestinal contents from 24 piglets in Japan by reverse transcription-polymerase chain reaction using a broadly reactive primer pair (P290/289) that targeted the highly conserved RNA polymerase regions of the enteric caliciviruses. From the positive samples, the entire viral genome of strain K7/JP and 3′-end parts of the genomes of strains K5/JP and K10/JP were cloned and sequenced. K7/JP had an RNA genome of 7144 bases, excluding its 3′ poly (A) tail. The K7/JP genome possessed two open reading frames and characteristics common to sapoviruses. In phylogenetic analysis using amino acid sequences of VP1, K5/JP was demonstrated to be close to the noroviruses previously detected in pigs, and K7/JP and K10/JP were considered to be classified as a new genogroup of sapoviruses.
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T Ando JS Noel RL Fankhauser (2000) ArticleTitleGenetic classification of “Norwalk-like viruses.” J Infect Dis 181 IssueID[Suppl 2] S336–S348 Occurrence Handle10804147 Occurrence Handle1:CAS:528:DC%2BD3cXktlGhu7c%3D Occurrence Handle10.1086/315589
RL Atmar MK Estes (2001) ArticleTitleDiagnosis of noncultivatable gastroenteritis viruses, the human caliciviruses Clin Microbiol Rev 14 15–37 Occurrence Handle11148001 Occurrence Handle1:CAS:528:DC%2BD3MXnvFansg%3D%3D Occurrence Handle10.1128/CMR.14.1.15-37.2001
AM Dastjerdi J Green CI Gallimore DWG Brown JC Bridger (1999) ArticleTitleThe bovine newbury agent-2 is genetically more closely related to human SRSVs than to animal caliciviruses Virology 254 1–5 Occurrence Handle9927568 Occurrence Handle1:CAS:528:DyaK1MXhtVCns7c%3D Occurrence Handle10.1006/viro.1998.9514
Y Deng CA Batten BL Liu PR Lambden M Elschner H Gunther P Otto P Schnurch W Eichhorn W Herbst IN Clarke (2003) ArticleTitleStudies of epidemiology and seroprevalence of bovine noroviruses in Germany J Clin Microbiol 41 2300–2305 Occurrence Handle12791840 Occurrence Handle1:STN:280:DC%2BD3s3ptVWitg%3D%3D Occurrence Handle10.1128/JCM.41.6.2300-2305.2003
T Farkas X Jiang ML Guerrero W Zhong N Wilton T Berke DO Matson LK Pickering G Ruiz-Palacios (2000) ArticleTitlePrevalence and genetic diversity of human caliciviruses (HuCVs) in Mexican children J Med Virol 62 217–223 Occurrence Handle11002251 Occurrence Handle1:STN:280:DC%2BD3cvltVOrsA%3D%3D Occurrence Handle10.1002/1096-9071(200010)62:2<217::AID-JMV13>3.0.CO;2-F
T Farkas S Nakajima M Sugieda X Deng W Zhong X Jiang (2005) ArticleTitleSeroprevalence of noroviruses in swine J Clin Microbiol 43 657–661 Occurrence Handle15695660 Occurrence Handle10.1128/JCM.43.2.657-661.2005
T Farkas WM Zhong Y Jing PW Huang SM Espinosa N Martinez AL Morrow GM Ruiz-Palacios LK Pickering X Jiang (2004) ArticleTitleGenetic diversity among sapoviruses Arch Virol 149 1309–1323 Occurrence Handle15221533 Occurrence Handle1:CAS:528:DC%2BD2cXltVKms70%3D Occurrence Handle10.1007/s00705-004-0296-9
RI Glass J Noel T Ando R Fankhauser G Belliot A Mounts UD Parashar JS Bresee SS Monroe (2000) ArticleTitleThe epidemiology of enteric caliciviruses from humans: a reassessment using new diagnostics J Infect Dis 181 IssueID[Suppl 2] S254–S261 Occurrence Handle10804134 Occurrence Handle10.1086/315588
KY Green T Ando MS Balayan T Berke IN Clarke MK Estes DO Matson S Nakata JD Neill MJ Studdert HJ Thiel (2000) ArticleTitleTaxonomy of the caliciviruses J Infect Dis 181 IssueID[Suppl 2] S322–S330 Occurrence Handle10804145 Occurrence Handle10.1086/315591
KY Green RM Chanock AZ Kapikian (2001) Human caliciviruses DM Knipe PM Howley (Eds) Fields virology EditionNumber4 NumberInSeries1 Lippincott & Wilkins Philadelphia 841–874
M Guo KO Chang ME Hardy Q Zhang AV Parwani LJ Saif (1999) ArticleTitleMolecular characterization of a porcine enteric calicivirus genetically related to Sapporo-like human caliciviruses J Virol 73 9625–9631 Occurrence Handle10516074 Occurrence Handle1:CAS:528:DyaK1MXmslGqs7s%3D
M Guo JF Evermann LJ Saif (2001) ArticleTitleDetection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink Arch Virol 146 479–493 Occurrence Handle11338385 Occurrence Handle1:CAS:528:DC%2BD3MXktlWjtrY%3D Occurrence Handle10.1007/s007050170157
X Jiang DY Graham K Wang MK Estes (1990) ArticleTitleNorwalk virus genome cloning and characterization Science 250 1580–1583 Occurrence Handle1:CAS:528:DyaK3MXktVajsr0%3D
X Jiang PW Huang WM Zhong T Farkas DW Cubitt DO Matson (1999) ArticleTitleDesign and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR J Virol Methods 83 145–154 Occurrence Handle10598092 Occurrence Handle1:CAS:528:DC%2BD3cXhslah Occurrence Handle10.1016/S0166-0934(99)00114-7
SM Karst CE Wobus M Lay J Davidson HWIV Virgin (2003) ArticleTitleSTAT1-dependent innate immunity to a Norwalk-like virus Science 299 1575–1578 Occurrence Handle12624267 Occurrence Handle1:CAS:528:DC%2BD3sXhs1yiu78%3D Occurrence Handle10.1126/science.1077905
M Kozak (1991) ArticleTitleStructural features in eukaryotic mRNAs that modulate the initiation of translation J Biol Chem 266 19867–19870 Occurrence Handle1939050 Occurrence Handle1:CAS:528:DyaK3MXlslOmsL4%3D
BL Liu IN Clarke EO Caul PR Lambden (1995) ArticleTitleHuman enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses Arch Virol 140 1345–1356 Occurrence Handle7661689 Occurrence Handle1:CAS:528:DyaK2MXot1Ogsbk%3D Occurrence Handle10.1007/BF01322662
BL Liu PR Lambden H Gunther P Otto M Elschner IN Clarke (1999) ArticleTitleMolecular characterization of a bovine enteric calicivirus: relationship to the Norwalk-like viruses J Virol 73 819–825 Occurrence Handle9847396 Occurrence Handle1:CAS:528:DyaK1cXotFSktb0%3D
S Nakata S Chiba H Terashima Y Sakuma R Kogasaka T Nakao (1983) ArticleTitleMicrotiter solid-phase radioimmunoassay for detection of human calicivirus in stools J Clin Microbiol 17 198–201 Occurrence Handle6833476 Occurrence Handle1:STN:280:BiyC287lvFU%3D
JD Neill (1990) ArticleTitleNucleotide sequence of a region of the feline calicivirus genome which encodes picornavirus-like RNA-dependent RNA polymerase, cysteine protease and 2C polypeptides Virus Res 17 145–160 Occurrence Handle2077782 Occurrence Handle1:CAS:528:DyaK3MXkt1ehtL8%3D Occurrence Handle10.1016/0168-1702(90)90061-F
JS Noel BL Liu CD Humphrey EM Rodriguez PR Lambden IN Clarke DM Dwyer T Ando RI Glass SS Monroe (1997) ArticleTitleParkville virus: a novel genetic variant of human calicivirus in the Sapporo virus clade, associated with an outbreak of gastroenteritis in adults J Med Virol 52 173–178 Occurrence Handle9179765 Occurrence Handle1:CAS:528:DyaK2sXjvFyks7o%3D Occurrence Handle10.1002/(SICI)1096-9071(199706)52:2<173::AID-JMV10>3.0.CO;2-M
XL Pang SJ Honma SJ Nakata T Vesikari (2000) ArticleTitleHuman caliciviruses in acute gastroenteritis of young children in the community J Infect Dis 181 IssueID[Suppl 2] S288–S294 Occurrence Handle10804140 Occurrence Handle10.1086/315590
AV Parwani LJ Saif SY Kang (1990) ArticleTitleBiochemical characterization of porcine enteric calicivirus: analysis of structural and non-structural viral proteins Arch Virol 112 41–53 Occurrence Handle2369321 Occurrence Handle1:CAS:528:DyaK3cXls1ymu7w%3D Occurrence Handle10.1007/BF01348984
LJ Saif EH Bohl KW Theil RF Cross JA House (1980) ArticleTitleRotavirus-like, calicivirus-like, and 23-nm virus-like particles associated with diarrhea in young pigs J Clin Microbiol 12 105–111 Occurrence Handle6252238 Occurrence Handle1:STN:280:Bi6D38nms1Y%3D
I Schuffenecker T Ando D Thouvenot B Lina M Aymard (2001) ArticleTitleGenetic classification of “Sapporo-like viruses” Arch Virol 146 2115–2132 Occurrence Handle11765915 Occurrence Handle1:CAS:528:DC%2BD38XovFWh Occurrence Handle10.1007/s007050170024
J Shirai M Shimizu A Fukusho (1985) ArticleTitleCoronavirus-, calicivirus-, and astrovirus-like particles associated with acute porcine gastroenteritis Jpn J Vet Sci 47 1023–1026 Occurrence Handle1:STN:280:BimC2cvovVM%3D
JR Smiley AE Hoet M Traven H Tsunemitsu LJ Saif (2003) ArticleTitleReverse transcription-PCR assays for detection of bovine enteric caliciviruses (BEC) and analysis of the genetic relationships among BEC and human caliciviruses J Clin Microbiol 41 3089–3099 Occurrence Handle12843048 Occurrence Handle1:CAS:528:DC%2BD3sXmsVWmsLc%3D Occurrence Handle10.1128/JCM.41.7.3089-3099.2003
M Sugieda H Nagaoka Y Kakishima T Ohshita S Nakamura S Nakajima (1998) ArticleTitleDetection of Norwalk-like virus genes in the caecum contents of pigs Arch Virol 143 1215–1221 Occurrence Handle9687878 Occurrence Handle1:CAS:528:DyaK1cXlslCqtLc%3D Occurrence Handle10.1007/s007050050369
M Sugieda S Nakajima (2002) ArticleTitleViruses detected in the caecum contents of healthy pigs representing a new genetic cluster in genogroup II of the genus ‘Norwalk-like viruses’ Virus Res 87 165–172 Occurrence Handle12191780 Occurrence Handle1:CAS:528:DC%2BD38XmtlCksb0%3D Occurrence Handle10.1016/S0168-1702(02)00107-7
WHM van der Poel J Vinje R van der Heide MI Herrera A Vivo MPG Koopmans (2000) ArticleTitleNorwalk-like calicivirus genes in farm animals Emerg Infect Dis 6 36–41 Occurrence Handle10653567 Occurrence Handle1:STN:280:DC%2BD3c7hvFGjsg%3D%3D
WHM van der Poel R van der Heide F Vershoor H Gelderblom J Vinje MPG Koopmans (2003) ArticleTitleEpidemiology of Norwalk-like virus infections in cattle in The Netherlands Vet Microbiol 92 297–309 Occurrence Handle12554100 Occurrence Handle10.1016/S0378-1135(02)00421-2
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Yin, Y., Tohya, Y., Ogawa, Y. et al. Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan. Arch Virol 151, 1749–1759 (2006). https://doi.org/10.1007/s00705-006-0750-y
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DOI: https://doi.org/10.1007/s00705-006-0750-y