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The “omics” of human male infertility: integrating big data in a systems biology approach

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Abstract

Spermatogenesis is a complex process in which >2300 genes are temporally and spatially regulated to form a terminally differentiated sperm cell that must maintain the ability to contribute to a totipotent embryo which can successfully differentiate into a healthy individual. This process is dependent on fidelity of the genome, epigenome, transcriptome, and proteome of the spermatogonia, supporting cells, and the resulting sperm cell. Infertility and/or disease risk may increase in the offspring if abnormalities are present. This review highlights the recent advances in our understanding of these processes in light of the “omics revolution”. We briefly review each of these areas, as well as highlight areas of future study and needs to advance further.

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References

  • Alazami AM, Alshammari MJ, Baig M, Salih MA, Hassan HH, Alkuraya FS (2014) NPHP4 mutation is linked to cerebello-oculo-renal syndrome and male infertility. Clin Genet 85:371–375

    Article  PubMed  CAS  Google Scholar 

  • Alder JK, Stanley SE, Wagner CL, Hamilton M, Hanumanthu VS, Armanios M (2015) Exome sequencing identifies mutant TINF2 in a family with pulmonary fibrosis. Chest 147:1361–1368

    Article  PubMed  Google Scholar 

  • Amaral A, Castillo J, Estanyol JM, Ballesca JL, Ramalho-Santos J, Oliva R (2013) Human sperm tail proteome suggests new endogenous metabolic pathways. Mol Cell Proteomics 12:330–342

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Amaral A, Castillo J, Ramalho-Santos J, Oliva R (2014a) The combined human sperm proteome: cellular pathways and implications for basic and clinical science. Hum Reprod Update 20:40–62

    Article  PubMed  CAS  Google Scholar 

  • Amaral A, Paiva C, Attardo Parrinello C, Estanyol JM, Ballesca JL, Ramalho-Santos J, Oliva R (2014b) Identification of proteins involved in human sperm motility using high-throughput differential proteomics. J Proteome Res 13:5670–5684

    Article  PubMed  CAS  Google Scholar 

  • Aoki VW, Carrell DT (2003) Human protamines and the developing spermatid: their structure, function, expression and relationship with male infertility. Asian J Androl 5:315–324

    PubMed  CAS  Google Scholar 

  • Aoki VW, Liu L, Carrell DT (2005) Identification and evaluation of a novel sperm protamine abnormality in a population of infertile males. Hum Reprod 20:1298–1306

    Article  PubMed  CAS  Google Scholar 

  • Aoki VW, Emery BR, Liu L, Carrell DT (2006a) Protamine levels vary between individual sperm cells of infertile human males and correlate with viability and DNA integrity. J Androl 27:890–898

    Article  PubMed  CAS  Google Scholar 

  • Aoki VW, Liu L, Jones KP, Hatasaka HH, Gibson M, Peterson CM, Carrell DT (2006b) Sperm protamine 1/protamine 2 ratios are related to in vitro fertilization pregnancy rates and predictive of fertilization ability. Fertil Steril 86:1408–1415

    Article  PubMed  CAS  Google Scholar 

  • Arpanahi A, Brinkworth M, Iles D, Krawetz SA, Paradowska A, Platts AE, Saida M, Steger K, Tedder P, Miller D (2009) Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences. Genome Res 19:1338–1349

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Aston KI, Carrell DT (2009) Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia. J Androl 30:711–725

    Article  PubMed  CAS  Google Scholar 

  • Aston KI, Carrell DT (2012) Emerging evidence for the role of genomic instability in male factor infertility. Syst Biol Reprod Med 58:71–80

    Article  PubMed  CAS  Google Scholar 

  • Aston KI, Conrad DF (2013) A review of genome-wide approaches to study the genetic basis for spermatogenic defects. Methods Mol Biol 927:397–410

    Article  PubMed  CAS  Google Scholar 

  • Aston KI, Krausz C, Laface I, Ruiz-Castane E, Carrell DT (2010) Evaluation of 172 candidate polymorphisms for association with oligozoospermia or azoospermia in a large cohort of men of European descent. Hum Reprod 25:1383–1397

  • Aston KI, Punj V, Liu L, Carrell DT (2012) Genome-wide sperm deoxyribonucleic acid methylation is altered in some men with abnormal chromatin packaging or poor in vitro fertilization embryogenesis. Fertil Steril 97:285–292

    Article  PubMed  CAS  Google Scholar 

  • Ayhan O, Balkan M, Guven A, Hazan R, Atar M, Tok A, Tolun A (2014) Truncating mutations in TAF4B and ZMYND15 causing recessive azoospermia. J Med Genet 51:239–244

    Article  PubMed  CAS  Google Scholar 

  • Azpiazu R, Amaral A, Castillo J, Estanyol JM, Guimera M, Ballesca JL, Balasch J, Oliva R (2014) High-throughput sperm differential proteomics suggests that epigenetic alterations contribute to failed assisted reproduction. Hum Reprod 29:1225–1237

    Article  PubMed  CAS  Google Scholar 

  • Baker MA, Witherdin R, Hetherington L, Cunningham-Smith K, Aitken RJ (2005) Identification of post-translational modifications that occur during sperm maturation using difference in two-dimensional gel electrophoresis. Proteomics 5:1003–1012

    Article  PubMed  CAS  Google Scholar 

  • Baker MA, Reeves G, Hetherington L, Muller J, Baur I, Aitken RJ (2007) Identification of gene products present in Triton X-100 soluble and insoluble fractions of human spermatozoa lysates using LC-MS/MS analysis. Proteomics Clin Appl 1:524–532

    Article  PubMed  CAS  Google Scholar 

  • Baker MA, Naumovski N, Hetherington L, Weinberg A, Velkov T, Aitken RJ (2013) Head and flagella subcompartmental proteomic analysis of human spermatozoa. Proteomics 13:61–74

    Article  PubMed  CAS  Google Scholar 

  • Balhorn R (2007) The protamine family of sperm nuclear proteins. Genome Biol 8:227

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Balhorn R, Gledhill BL, Wyrobek AJ(1977) Mouse sperm chromatinproteins: quantitative isolation and partial characterization.Biochemistry16:4074–4080

  • Balhorn R, Reed S, Tanphaichitr N (1988) Aberrant protamine 1/protamine 2 ratios in sperm of infertile human males. Experientia 44:52–55

    Article  PubMed  CAS  Google Scholar 

  • Belokopytova IA, Kostyleva EI, Tomilin AN, Vorob’ev VI (1993) Human male infertility may be due to a decrease of the protamine P2 content in sperm chromatin. Mol Reprod Dev 34:53–57

    Article  PubMed  CAS  Google Scholar 

  • Borgel J, Guibert S, Li Y, Chiba H, Schubeler D, Sasaki H, Forne T, Weber M (2010) Targets and dynamics of promoter DNA methylation during early mouse development. Nat Genet 42:1093–1100

    Article  PubMed  CAS  Google Scholar 

  • Brewer L, Corzett M, Balhorn R (2002) Condensation of DNA by spermatid basic nuclear proteins. J Biol Chem 277:38895–38900

    Article  PubMed  CAS  Google Scholar 

  • Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ (2014) High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm. Dev Cell 30:11–22

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Carrell DT (2012) Epigenetics of the male gamete. Fertil Steril 97:267–274

    Article  PubMed  CAS  Google Scholar 

  • Carrell DT, Aston KI (2011) The search for SNPs, CNVs, and epigenetic variants associated with the complex disease of male infertility. Syst Biol Reprod Med 57:17–26

    Article  PubMed  Google Scholar 

  • Carrell DT, Hammoud SS (2010) The human sperm epigenome and its potential role in embryonic development. Mol Hum Reprod 16:37–47

    Article  PubMed  CAS  Google Scholar 

  • Carrell DT, Liu L (2001) Altered protamine 2 expression is uncommon in donors of known fertility, but common among men with poor fertilizing capacity, and may reflect other abnormalities of spermiogenesis. J Androl 22:604–610

    PubMed  CAS  Google Scholar 

  • Carrell DT, Emery BR, Hammoud S (2007) Altered protamine expression and diminished spermatogenesis: what is the link? Hum Reprod Update 13:313–327

    Article  PubMed  CAS  Google Scholar 

  • Carrell DT, Emery BR, Hammoud S (2008) The aetiology of sperm protamine abnormalities and their potential impact on the sperm epigenome. Int J Androl 31:537–545

    Article  PubMed  Google Scholar 

  • Castillo J, Simon L, de Mateo S, Lewis S, Oliva R (2011) Protamine/DNA ratios and DNA damage in native and density gradient centrifuged sperm from infertile patients. J Androl 32:324–332

    Article  PubMed  CAS  Google Scholar 

  • Castillo J, Amaral A, Azpiazu R, Vavouri T, Estanyol JM, Ballesca JL, Oliva R (2014a) Genomic and proteomic dissection and characterization of the human sperm chromatin. Mol Hum Reprod 20:1041–1053

    Article  PubMed  Google Scholar 

  • Castillo J, Amaral A, Oliva R (2014b) Sperm nuclear proteome and its epigenetic potential. Andrology 2:326–338

    Article  PubMed  CAS  Google Scholar 

  • Castillo J, Estanyol JM, Ballesca JL, Oliva R (2015) Human sperm chromatin epigenetic potential: genomics, proteomics, and male infertility. Asian J Androl (in press)

  • Chan CC, Shui HA, Wu CH, Wang CY, Sun GH, Chen HM, Wu GJ (2009) Motility and protein phosphorylation in healthy and asthenozoospermic sperm. J Proteome Res 8:5382–5386

    Article  PubMed  CAS  Google Scholar 

  • Chatzimeletiou K, Morrison EE, Prapas N, Prapas Y, Handyside AH (2008) The centrosome and early embryogenesis: clinical insights. Reprod Biomed Online 16:485–491

    Article  PubMed  Google Scholar 

  • Chevaillier P, Mauro N, Feneux D, Jouannet P, David G (1987) Anomalous protein complement of sperm nuclei in some infertile men. Lancet 2:806–807

    Article  PubMed  CAS  Google Scholar 

  • Chihara M, Yoshihara K, Ishiguro T, Yokota Y, Adachi S, Okada H, Kashima K, Sato T, Tanaka A, Tanaka K, Enomoto T (2015) Susceptibility to male infertility: replication study in Japanese men looking for an association with four GWAS-derived loci identified in European men. J Assist Reprod Genet (in press)

  • Codina M, Estanyol JM, Fidalgo MJ, Ballesca JL, Oliva R (2015) Advances in sperm proteomics: best-practise methodology and clinical potential. Expert Rev Proteomics 1–23

  • Cooper TG, Noonan E, von Eckardstein S, Auger J, Baker HW, Behre HM, Haugen TB, Kruger T, Wang C, Mbizvo MT, Vogelsong KM (2010) World Health Organization reference values for human semen characteristics. Hum Reprod Update 16:231–245

  • Dahm R (2005) Friedrich Miescher and the discovery of DNA. Dev Biol 278:274–288

    Article  PubMed  CAS  Google Scholar 

  • Dalgaard MD, Weinhold N, Edsgard D, Silver JD, Pers TH, Nielsen JE, Jorgensen N, Juul A, Gerds TA, Giwercman A, Giwercman YL, Cohn-Cedermark G, Virtanen HE, Toppari J, Daugaard G, Jensen TS, Brunak S, Rajpert-De Meyts E, Skakkebaek NE, Leffers H, Gupta R (2012) A genome-wide association study of men with symptoms of testicular dysgenesis syndrome and its network biology interpretation. J Med Genet 49:58–65

    Article  PubMed  PubMed Central  Google Scholar 

  • Dam AH, Koscinski I, Kremer JA, Moutou C, Jaeger AS, Oudakker AR, Tournaye H, Charlet N, Lagier-Tourenne C, van Bokhoven H, Viville S (2007) Homozygous mutation in SPATA16 is associated with male infertility in human globozoospermia. Am J Hum Genet 81:813–820

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • de Mateo S, Martinez-Heredia J, Estanyol JM, Dominguez-Fandos D, Vidal-Taboada JM, Ballesca JL, Oliva R (2007) Marked correlations in protein expression identified by proteomic analysis of human spermatozoa. Proteomics 7:4264–4277

    Article  PubMed  Google Scholar 

  • de Mateo S, Gazquez C, Guimera M, Balasch J, Meistrich ML, Ballesca JL, Oliva R (2009) Protamine 2 precursors (Pre-P2), protamine 1 to protamine 2 ratio (P1/P2), and assisted reproduction outcome. Fertil Steril 91:715–722

    Article  PubMed  CAS  Google Scholar 

  • de Mateo S, Castillo J, Estanyol JM, Ballesca JL, Oliva R (2011a) Proteomic characterization of the human sperm nucleus. Proteomics 11:2714–2726

    Article  PubMed  CAS  Google Scholar 

  • de Mateo S, Ramos L, van der Vlag J, de Boer P, Oliva R (2011b) Improvement in chromatin maturity of human spermatozoa selected through density gradient centrifugation. Int J Androl 34:256–267

    Article  PubMed  Google Scholar 

  • de Mateo S, Estanyol JM, Oliva R (2013) Methods for the analysis of the sperm proteome. Methods Mol Biol 927:411–422

    Article  PubMed  CAS  Google Scholar 

  • de Yebra L, Ballesca JL, Vanrell JA, Corzett M, Balhorn R, Oliva R (1998) Detection of P2 precursors in the sperm cells of infertile patients who have reduced protamine P2 levels. Fertil Steril 69:755–759

    Article  PubMed  Google Scholar 

  • Domon B, Aebersold R (2006) Mass spectrometry and protein analysis. Science 312:212–217

    Article  PubMed  CAS  Google Scholar 

  • Dunn GA, Morgan CP, Bale TL (2011) Sex-specificity in transgenerational epigenetic programming. Horm Behav 59:290–295

    Article  PubMed  Google Scholar 

  • Eggers S, DeBoer KD, van den Bergen J, Gordon L, White SJ, Jamsai D, McLachlan RI, Sinclair AH, O’Bryan MK (2015) Copy number variation associated with meiotic arrest in idiopathic male infertility. Fertil Steril 103:214–219

    Article  PubMed  Google Scholar 

  • Eisenberg ML, Li S, Behr B, Pera RR, Cullen MR (2015) Relationship between semen production and medical comorbidity. Fertil Steril 103:66–71

    Article  PubMed  Google Scholar 

  • Erkek S, Hisano M, Liang CY, Gill M, Murr R, Dieker J, Schubeler D, van der Vlag J, Stadler MB, Peters AH (2013) Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa. Nat Struct Mol Biol 20:868–875

    Article  PubMed  CAS  Google Scholar 

  • Felix K (1960) Protamines. Adv Protein Chem 15:1–56

    Article  PubMed  CAS  Google Scholar 

  • Frans EM, Sandin S, Reichenberg A, Lichtenstein P, Langstrom N, Hultman CM (2008) Advancing paternal age and bipolar disorder. Arch Gen Psychiatry 65:1034–1040

    Article  PubMed  Google Scholar 

  • Frapsauce C, Pionneau C, Bouley J, de Larouziere V, Berthaut I, Ravel C, Antoine JM, Soubrier F, Mandelbaum J (2009) Unexpected in vitro fertilization failure in patients with normal sperm: a proteomic analysis. Gynecol Obstet Fertil 37:796–802

    Article  PubMed  CAS  Google Scholar 

  • Frapsauce C, Pionneau C, Bouley J, Delarouziere V, Berthaut I, Ravel C, Antoine JM, Soubrier F, Mandelbaum J (2014) Proteomic identification of target proteins in normal but nonfertilizing sperm. Fertil Steril 102:372–380

    Article  PubMed  CAS  Google Scholar 

  • Fruhmesser A, Vogt PH, Zimmer J, Witsch-Baumgartner M, Fauth C, Zschocke J, Pinggera GM, Kotzot D (2013) Single nucleotide polymorphism array analysis in men with idiopathic azoospermia or oligoasthenozoospermia syndrome. Fertil Steril 100:81–87

    Article  PubMed  CAS  Google Scholar 

  • Gannon JR, Emery BR, Jenkins TG, Carrell DT (2014) The sperm epigenome: implications for the embryo. Adv Exp Med Biol 791:53–66

    Article  PubMed  CAS  Google Scholar 

  • Gatewood JM, Cook GR, Balhorn R, Bradbury EM, Schmid CW (1987) Sequence-specific packaging of DNA in human sperm chromatin. Science 236:962–964

    Article  PubMed  CAS  Google Scholar 

  • Gilboa E, Elkana Y, Rigbi M (1973) Purification and properties of human acrosin. Eur J Biochem 39:85–92

    Article  PubMed  CAS  Google Scholar 

  • Gkountela S, Clark AT (2014) A big surprise in the little zygote: the curious business of losing methylated cytosines. Cell Stem Cell 15:393–394

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Groos S, Krause W, Mueller UO (2006) Men with subnormal sperm counts live shorter lives. Soc Biol 53:46–60

    PubMed  Google Scholar 

  • Gu B, Zhang J, Wu Y, Zhang X, Tan Z, Lin Y, Huang X, Chen L, Yao K, Zhang M (2011) Proteomic analyses reveal common promiscuous patterns of cell surface proteins on human embryonic stem cells and sperms. PLoS ONE 6, e19386

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Hammoud SS, Nix DA, Zhang H, Purwar J, Carrell DT, Cairns BR (2009) Distinctive chromatin in human sperm packages genes for embryo development. Nature 460:473–478

    PubMed  PubMed Central  CAS  Google Scholar 

  • Hammoud SS, Nix DA, Hammoud AO, Gibson M, Cairns BR, Carrell DT (2011) Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men.Hum Reprod 26):2558–2569

  • Hammoud SS, Low DH, Yi C, Carrell DT, Guccione E, Cairns BR (2014) Chromatin and transcription transitions of mammalian adult germline stem cells and spermatogenesis. Cell Stem Cell 15:239–253

    Article  PubMed  CAS  Google Scholar 

  • Harbuz R, Zouari R, Pierre V, Ben Khelifa M, Kharouf M, Coutton C, Merdassi G, Abada F, Escoffier J, Nikas Y, Vialard F, Koscinski I, Triki C, Sermondade N, Schweitzer T, Zhioua A, Zhioua F, Latrous H, Halouani L, Ouafi M, Makni M, Jouk PS, Sele B, Hennebicq S, Satre V, Viville S, Arnoult C, Lunardi J, Ray PF (2011) A recurrent deletion of DPY19L2 causes infertility in man by blocking sperm head elongation and acrosome formation. Am J Hum Genet 88:351–361

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Hare EH, Moran PA (1979) Raised parental age in psychiatric patients: evidence for the constitutional hypothesis. Br J Psychiatry 134:169–177

    Article  PubMed  CAS  Google Scholar 

  • Hotaling J, Carrell DT (2014) Clinical genetic testing for male factor infertility: current applications and future directions. Andrology 2:339–350

    Article  PubMed  CAS  Google Scholar 

  • Hotaling JM, Walsh TJ (2009) Male infertility: a risk factor for testicular cancer. Nat Rev Urol 6:550–556

    Article  PubMed  CAS  Google Scholar 

  • Hu Z, Xia Y, Guo X, Dai J, Li H, Hu H, Jiang Y, Lu F, Wu Y, Yang X, Yao B, Lu C, Xiong C, Li Z, Gui Y, Liu J, Zhou Z, Shen H, Wang X, Sha J (2012) A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia. Nat Genet 44:183–186

    Article  CAS  Google Scholar 

  • Jacobsen R, Bostofte E, Engholm G, Hansen J, Olsen JH, Skakkebaek NE,Moller H (2000) Risk of testicular cancer in men with abnormal semencharacteristics: cohort study.BMJ 321:789–792

  • Jaenisch R, Bird A (2003) Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet 33(Suppl):245–254

    Article  PubMed  CAS  Google Scholar 

  • Jenkins TG, Carrell DT (2012) Dynamic alterations in the paternal epigenetic landscape following fertilization. Front Genet 3:143

    Article  PubMed  PubMed Central  Google Scholar 

  • Jenkins TG, Aston KI, Trost C, Farley J, Hotaling JM, Carrell DT (2015) Intra-sample heterogeneity of sperm DNA methylation. Mol Hum Reprod 21:313–319

    Article  PubMed  Google Scholar 

  • Jensen TK, Jacobsen R, Christensen K, Nielsen NC, Bostofte E (2009) Good semen quality and life expectancy: a cohort study of 43,277 men. Am J Epidemiol 170:559–565

    Article  PubMed  Google Scholar 

  • Jodar M, Oliva R (2014) Protamine alterations in human spermatozoa. Adv Exp Med Biol 791:83–102

    Article  PubMed  CAS  Google Scholar 

  • Jodar M, Kalko S, Castillo J, Ballesca JL, Oliva R (2012) Differential RNAs in the sperm cells of asthenozoospermic patients. Hum Reprod 27:1431–1438

    Article  PubMed  CAS  Google Scholar 

  • Jodar M, Selvaraju S, Sendler E, Diamond MP, Krawetz SA, Reproductive Medicine N (2013) The presence, role and clinical use of spermatozoal RNAs. Hum Reprod Update 19:604–624

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Khara KK, Vlad M, Griffiths M, Kennedy CR (1997) Human protamines and male infertility. J Assist Reprod Genet 14:282–290

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Kichine E, Di Falco M, Hales BF, Robaire B, Chan P (2013) Analysis of the sperm head protein profiles in fertile men: consistency across time in the levels of expression of heat shock proteins and peroxiredoxins. PLoS ONE 8, e77471

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Klaver R, Gromoll J (2014) Bringing epigenetics into the diagnostics of the andrology laboratory: challenges and perspectives. Asian J Androl 16:669–674

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Koscinski I, Elinati E, Fossard C, Redin C, Muller J, Velez de la Calle J, Schmitt F, Ben Khelifa M, Ray PF, Kilani Z, Barratt CL, Viville S (2011) DPY19L2 deletion as a major cause of globozoospermia. Am J Hum Genet 88:344–350

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Kosova G, Scott NM, Niederberger C, Prins GS, Ober C (2012) Genome-wide association study identifies candidate genes for male fertility traits in humans. Am J Hum Genet 90:950–961

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Krausz C, Giachini C, Lo Giacco D, Daguin F, Chianese C, Ars E, Ruiz-Castane E, Forti G, Rossi E (2012) High resolution X chromosome-specific array-CGH detects new CNVs in infertile males. PLoS ONE 7, e44887

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Kriegel TM, Heidenreich F, Kettner K, Pursche T, Hoflack B, Grunewald S, Poenicke K, Glander HJ, Paasch U (2009) Identification of diabetes- and obesity-associated proteomic changes in human spermatozoa by difference gel electrophoresis. Reprod Biomed Online 19:660–670

    Article  PubMed  CAS  Google Scholar 

  • Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blocker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowski J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ, International Human Genome Sequencing C (2001) Initial sequencing and analysis of the human genome. Nature 409:860–921

    Article  PubMed  CAS  Google Scholar 

  • Li Y, Lalancette C, Miller D, Krawetz SA (2008) Characterization of nucleohistone and nucleoprotamine components in the mature human sperm nucleus. Asian J Androl 10:535–541

    Article  PubMed  CAS  Google Scholar 

  • Liao TT, Xiang Z, Zhu WB, Fan LQ (2009) Proteome analysis of round-headed and normal spermatozoa by 2-D fluorescence difference gel electrophoresis and mass spectrometry. Asian J Androl 11:683–693

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Liu WM, Pang RT, Chiu PC, Wong BP, Lao K, Lee KF, Yeung WS (2012) Sperm-borne microRNA-34c is required for the first cleavage division in mouse. Proc Natl Acad Sci U S A 109:490–494

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Liu X, Wang W, Liu F (2014) New insight into the castrated mouse epididymis based on comparative proteomics. Reprod Fertil Dev (in press)

  • Lopes AM, Aston KI, Thompson E, Carvalho F, Goncalves J, Huang N, Matthiesen R, Noordam MJ, Quintela I, Ramu A, Seabra C, Wilfert AB, Dai J, Downie JM, Fernandes S, Guo X, Sha J, Amorim A, Barros A, Carracedo A, Hu Z, Hurles ME, Moskovtsev S, Ober C, Paduch DA, Schiffman JD, Schlegel PN, Sousa M, Carrell DT, Conrad DF (2013) Human spermatogenic failure purges deleterious mutation load from the autosomes and both sex chromosomes, including the gene DMRT1. PLoS Genet 9, e1003349

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Loppin B, Lepetit D, Dorus S, Couble P, Karr TL (2005) Origin and neofunctionalization of a Drosophila paternal effect gene essential for zygote viability. Curr Biol 15:87–93

    Article  PubMed  CAS  Google Scholar 

  • Luk AC, Chan WY, Rennert OM, Lee TL (2014) Long noncoding RNAs in spermatogenesis: insights from recent high-throughput transcriptome studies. Reproduction 147:R131–R141

    Article  PubMed  CAS  Google Scholar 

  • Martinez-Heredia J, Estanyol JM, Ballesca JL, Oliva R (2006) Proteomic identification of human sperm proteins. Proteomics 6:4356–4369

    Article  PubMed  CAS  Google Scholar 

  • Martinez-Heredia J, de Mateo S, Vidal-Taboada JM, Ballesca JL, Oliva R (2008) Identification of proteomic differences in asthenozoospermic sperm samples. Hum Reprod 23:783–791

    Article  PubMed  CAS  Google Scholar 

  • Martos SN, Tang WY, Wang Z (2015) Elusive inheritance: Transgenerational effects and epigenetic inheritance in human environmental disease. Prog Biophys Mol Biol (in press)

  • McKay DJ, Renaux BS, Dixon GH (1986) Human sperm protamines. Amino-acid sequences of two forms of protamine P2. Eur J Biochem 156:5–8

    Article  PubMed  CAS  Google Scholar 

  • Mengual L, Ballesca JL, Ascaso C, Oliva R (2003) Marked differences in protamine content and P1/P2 ratios in sperm cells from percoll fractions between patients and controls. J Androl 24:438–447

    Article  PubMed  Google Scholar 

  • Miescher F (1874) Die Spermatozoen einiger Wirbeltiere. Ein Beitrag zur Histochemie. Verh Naturforsch Ges VI:138–208

  • Miller B, Messias E, Miettunen J, Alaraisanen A, Jarvelin MR, Koponen H, Rasanen P, Isohanni M, Kirkpatrick B (2011a) Meta-analysis of paternal age and schizophrenia risk in male versus female offspring. Schizophr Bull 37:1039–1047

    Article  PubMed  PubMed Central  Google Scholar 

  • Miller B, Suvisaari J, Miettunen J, Jarvelin MR, Haukka J, Tanskanen A, Lonnqvist J, Isohanni M, Kirkpatrick B (2011b) Advanced paternal age and parental history of schizophrenia. Schizophr Res 133:125–132

    Article  PubMed  Google Scholar 

  • Mohri H (1968) Amino-acid composition of “Tubulin” constituting microtubules of sperm flagella. Nature 217:1053–1054

    Article  PubMed  CAS  Google Scholar 

  • Molaro A, Hodges E, Fang F, Song Q, McCombie WR, Hannon GJ, Smith AD (2011) Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell 146:1029–1041

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Montellier E, Boussouar F, Rousseaux S, Zhang K, Buchou T, Fenaille F, Shiota H, Debernardi A, Hery P, Curtet S, Jamshidikia M, Barral S, Holota H, Bergon A, Lopez F, Guardiola P, Pernet K, Imbert J, Petosa C, Tan M, Zhao Y, Gerard M, Khochbin S (2013) Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B. Genes Dev 27:1680–1692

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Montjean D, Zini A, Ravel C, Belloc S, Dalleac A, Copin H, Boyer P, McElreavey K, Benkhalifa M (2015) Sperm global DNA methylation level: association with semen parameters and genome integrity. Andrology 3:235–240

    Article  PubMed  CAS  Google Scholar 

  • Moore DJ, Onoufriadis A, Shoemark A, Simpson MA, zur Lage PI, de Castro SC, Bartoloni L, Gallone G, Petridi S, Woollard WJ, Antony D, Schmidts M, Didonna T, Makrythanasis P, Bevillard J, Mongan NP, Djakow J, Pals G, Lucas JS, Marthin JK, Nielsen KG, Santoni F, Guipponi M, Hogg C, Antonarakis SE, Emes RD, Chung EM, Greene ND, Blouin JL, Jarman AP, Mitchison HM (2013) Mutations in ZMYND10, a gene essential for proper axonemal assembly of inner and outer dynein arms in humans and flies, cause primary ciliary dyskinesia. Am J Hum Genet 93:346–356

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Nanassy L, Carrell DT (2011) Analysis of the methylation pattern of six gene promoters in sperm of men with abnormal protamination. Asian J Androl 13:342–346

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • O’Doherty AM, McGettigan PA (2014) Epigenetic processes in the male germline. Reprod Fertil Dev (in press)

  • Odom LN, Segars J (2010) Imprinting disorders and assisted reproductive technology. Curr Opin Endocrinol Diabetes Obes 17:517–522

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Olbrich H, Schmidts M, Werner C, Onoufriadis A, Loges NT, Raidt J, Banki NF, Shoemark A, Burgoyne T, Al Turki S, Hurles ME, Consortium UK, Kohler G, Schroeder J, Nurnberg G, Nurnberg P, Chung EM, Reinhardt R, Marthin JK, Nielsen KG, Mitchison HM, Omran H (2012) Recessive HYDIN mutations cause primary ciliary dyskinesia without randomization of left-right body asymmetry. Am J Hum Genet 91:672–684

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Oliva R (2006) Protamines and male infertility. Hum Reprod Update 12:417–435

    Article  PubMed  CAS  Google Scholar 

  • Oliva R, Dixon GH (1991) Vertebrate protamine genes and the histone-to-protamine replacement reaction. Prog Nucleic Acid Res Mol Biol 40:25–94

    Article  PubMed  CAS  Google Scholar 

  • Oliva R, Martinez-Heredia J, Estanyol JM (2008) Proteomics in the study of the sperm cell composition, differentiation and function. Syst Biol Reprod Med 54:23–36

    Article  PubMed  CAS  Google Scholar 

  • Oliva R, de Mateo S, Estanyol JM (2009) Sperm cell proteomics. Proteomics 9:1004–1017

    Article  PubMed  CAS  Google Scholar 

  • Onoufriadis A, Shoemark A, Munye MM, James CT, Schmidts M, Patel M, Rosser EM, Bacchelli C, Beales PL, Scambler PJ, Hart SL, Danke-Roelse JE, Sloper JJ, Hull S, Hogg C, Emes RD, Pals G, Moore AT, Chung EM, Uk10K, Mitchison HM (2014) Combined exome and whole-genome sequencing identifies mutations in ARMC4 as a cause of primary ciliary dyskinesia with defects in the outer dynein arm. J Med Genet 51:61–67

  • Ostermeier GC, Dix DJ, Miller D, Khatri P, Krawetz SA (2002) Spermatozoal RNA profiles of normal fertile men. Lancet 360:772–777

    Article  PubMed  CAS  Google Scholar 

  • Ostermeier GC, Goodrich RJ, Moldenhauer JS, Diamond MP, Krawetz SA (2005) A suite of novel human spermatozoal RNAs. J Androl 26:70–74

    PubMed  CAS  Google Scholar 

  • Owen CM, Segars JH Jr (2009) Imprinting disorders and assisted reproductive technology. Semin Reprod Med 27:417–428

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Paasch U, Heidenreich F, Pursche T, Kuhlisch E, Kettner K, Grunewald S, Kratzsch J, Dittmar G, Glander HJ, Hoflack B, Kriegel TM (2011) Identification of increased amounts of eppin protein complex components in sperm cells of diabetic and obese individuals by difference gel electrophoresis. Mol Cell Proteomics 10(M110):007187

    PubMed  Google Scholar 

  • Paiva C, Amaral A, Rodriguez M, Canyellas N, Correig X, Ballesca JL, Ramalho-Santos J, Oliva R (2015) Identification of endogenous metabolites in human sperm cells using H-NMR and GC-MS. Andrology (in press)

  • Pantano L, Jodar M, Bak M, Ballesca JL, Tommerup N, Oliva R, Vavouri T (2015) The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes. RNA (in press)

  • Parte PP, Rao P, Redij S, Lobo V, D’Souza SJ, Gajbhiye R, Kulkarni V (2012) Sperm phosphoproteome profiling by ultra performance liquid chromatography followed by data independent analysis (LC-MS(E)) reveals altered proteomic signatures in asthenozoospermia. J Proteomics 75:5861–5871

    Article  PubMed  CAS  Google Scholar 

  • Pixton KL, Deeks ED, Flesch FM, Moseley FL, Bjorndahl L, Ashton PR, Barratt CL, Brewis IA (2004) Sperm proteome mapping of a patient who experienced failed fertilization at IVF reveals altered expression of at least 20 proteins compared with fertile donors: case report. Hum Reprod 19:1438–1447

    Article  PubMed  Google Scholar 

  • Rangasamy D, Berven L, Ridgway P, Tremethick DJ (2003) Pericentric heterochromatin becomes enriched with H2A.Z during early mammalian development. EMBO J 22:1599–1607

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Rathke C, Baarends WM, Awe S, Renkawitz-Pohl R (2014) Chromatin dynamics during spermiogenesis. Biochim Biophys Acta 1839:155–168

    Article  PubMed  CAS  Google Scholar 

  • Raychaudhuri N, Dubruille R, Orsi GA, Bagheri HC, Loppin B, Lehner CF (2012) Transgenerational propagation and quantitative maintenance of paternal centromeres depends on Cid/Cenp-A presence in Drosophila sperm. PLoS Biol 10, e1001434

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Samans B, Yang Y, Krebs S, Sarode GV, Blum H, Reichenbach M, Wolf E, Steger K, Dansranjavin T, Schagdarsurengin U (2014) Uniformity of nucleosome preservation pattern in Mammalian sperm and its connection to repetitive DNA elements. Dev Cell 30:23–35

    Article  PubMed  CAS  Google Scholar 

  • Sandin S, Schendel D, Magnusson P, Hultman C, Suren P, Susser E, Gronborg T, Gissler M, Gunnes N, Gross R, Henning M, Bresnahan M, Sourander A, Hornig M, Carter K, Francis R, Parner E, Leonard H, Rosanoff M, Stoltenberg C, Reichenberg A (2015) Autism risk associated with parental age and with increasing difference in age between the parents. Mol Psychiatr (in press)

  • Sanli I, Feil R (2015) Chromatin mechanisms in the developmental control of imprinted gene expression. Int J Biochem Cell Biol (in press)

  • Sartorius GA, Nieschlag E (2010) Paternal age and reproduction. Hum Reprod Update 16:65–79

    Article  PubMed  Google Scholar 

  • Sato Y, Jinam T, Iwamoto T, Yamauchi A, Imoto I, Inoue I, Tajima A (2013) Replication study and meta-analysis of human nonobstructive azoospermia in Japanese populations. Biol Reprod 88:87

    Article  PubMed  CAS  Google Scholar 

  • Sato Y, Tajima A, Tsunematsu K, Nozawa S, Yoshiike M, Koh E, Kanaya J, Namiki M, Matsumiya K, Tsujimura A, Komatsu K, Itoh N, Eguchi J, Imoto I, Yamauchi A, Iwamoto T (2015) An association study of four candidate loci for human male fertility traits with male infertility. Hum Reprod (in press)

  • Schultz N, Hamra FK, Garbers DL (2003) A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets. Proc Natl Acad Sci U S A 100:12201–12206

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Shen S, Wang J, Liang J, He D (2013) Comparative proteomic study between human normal motility sperm and idiopathic asthenozoospermia. World J Urol 31:1395–1401

    Article  PubMed  CAS  Google Scholar 

  • Simon L, Castillo J, Oliva R, Lewis SE (2011) Relationships between human sperm protamines, DNA damage and assisted reproduction outcomes. Reprod Biomed Online 23:724–734

    Article  PubMed  CAS  Google Scholar 

  • Siva AB, Kameshwari DB, Singh V, Pavani K, Sundaram CS, Rangaraj N, Deenadayal M, Shivaji S (2010) Proteomics-based study on asthenozoospermia: differential expression of proteasome alpha complex. Mol Hum Reprod 16:452–462

    Article  PubMed  CAS  Google Scholar 

  • Skakkebaek NE, Rajpert-De Meyts E, Main KM (2001) Testicular dysgenesis syndrome: an increasingly common developmental disorder with environmental aspects. Hum Reprod 16:972–978

    Article  PubMed  CAS  Google Scholar 

  • Smallwood SA, Tomizawa S, Krueger F, Ruf N, Carli N, Segonds-Pichon A, Sato S, Hata K, Andrews SR, Kelsey G (2011) Dynamic CpG island methylation landscape in oocytes and preimplantation embryos. Nat Genet 43:811–814

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Smith ZD, Chan MM, Humm KC, Karnik R, Mekhoubad S, Regev A, Eggan K, Meissner A (2014) DNA methylation dynamics of the human preimplantation embryo. Nature 511:611–615

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Solinas-Toldo S, Lampel S, Stilgenbauer S, Nickolenko J, Benner A, Dohner H, Cremer T, Lichter P (1997) Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes Chromosome Cancer 20:399–407

    Article  CAS  Google Scholar 

  • Song X, Zhao Y, Cai Q, Zhang Y, Niu Y (2013) Association of the Glutathione S-transferases M1 and T1 polymorphism with male infertility: a meta-analysis. J Assist Reprod Genet 30:131–141

    Article  PubMed  PubMed Central  Google Scholar 

  • Steilmann C, Paradowska A, Bartkuhn M, Vieweg M, Schuppe HC, Bergmann M, Kliesch S, Weidner W, Steger K (2011) Presence of histone H3 acetylated at lysine 9 in male germ cells and its distribution pattern in the genome of human spermatozoa. Reprod Fertil Dev 23:997–1011

    Article  PubMed  CAS  Google Scholar 

  • Stouffs K, Vandermaelen D, Massart A, Menten B, Vergult S, Tournaye H, Lissens W (2012) Array comparative genomic hybridization in male infertility. Hum Reprod 27:921–929

    Article  PubMed  CAS  Google Scholar 

  • Sui W, Hou X, Che W, Ou M, Sun G, Huang S, Liu F, Chen P, Wei X, Dai Y (2015) CCDC40 mutation as a cause of primary ciliary dyskinesia: a case report and review of literature. Clin Respir J (in press)

  • Szyf M (2015) Nongenetic inheritance and transgenerational epigenetics. Trends Mol Med 21:134–144

    Article  PubMed  Google Scholar 

  • Tarin JJ, Garcia-Perez MA, Hamatani T, Cano A (2015) Infertility etiologies are genetically and clinically linked with other diseases in single meta-diseases. Reprod Biol Endocrinol 13:31

    Article  PubMed  PubMed Central  Google Scholar 

  • Tenenbaum-Rakover Y, Weinberg-Shukron A, Renbaum P, Lobel O, Eideh H, Gulsuner S, Dahary D, Abu-Rayyan A, Kanaan M, Levy-Lahad E, Bercovich D, Zangen D (2015) Minichromosome maintenance complex component 8 (MCM8) gene mutations result in primary gonadal failure. J Med Genet (in press)

  • Thacker S, Yadav SP, Sharma RK, Kashou A, Willard B, Zhang D, Agarwal A (2011) Evaluation of sperm proteins in infertile men: a proteomic approach. Fertil Steril 95:2745–2748

    Article  PubMed  CAS  Google Scholar 

  • Torregrosa N, Dominguez-Fandos D, Camejo MI, Shirley CR, Meistrich ML, Ballesca JL, Oliva R (2006) Protamine 2 precursors, protamine 1/protamine 2 ratio, DNA integrity and other sperm parameters in infertile patients. Hum Reprod 21:2084–2089

    Article  PubMed  CAS  Google Scholar 

  • Tu W, Liu Y, Shen Y, Yan Y, Wang X, Yang D, Li L, Ma Y, Tao D, Zhang S, Yang Y (2015) Genome-wide Loci linked to non-obstructive azoospermia susceptibility may be independent of reduced sperm production in males with normozoospermia. Biol Reprod 92:41

    Article  PubMed  CAS  Google Scholar 

  • Tuttelmann F, Rajpert-De Meyts E, Nieschlag E, Simoni M (2007) Gene polymorphisms and male infertility--a meta-analysis and literature review. Reprod Biomed Online 15:643–658

    Article  PubMed  Google Scholar 

  • Tuttelmann F, Simoni M, Kliesch S, Ledig S, Dworniczak B, Wieacker P, Ropke A (2011) Copy number variants in patients with severe oligozoospermia and sertoli-cell-only syndrome. PLoS ONE 6, e19426

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Tuttelmann F, Laan M, Grigorova M, Punab M, Sober S, Gromoll J (2012) Combined effects of the variants FSHB -211G>T and FSHR 2039A>G on male reproductive parameters. J Clin Endocrinol Metab 97:3639–3647

    Article  PubMed  CAS  Google Scholar 

  • Urdinguio RG, Bayon GF, Dmitrijeva M, Torano EG, Bravo C, Fraga MF, Bassas L, Larriba S, Fernandez AF (2015) Aberrant DNA methylation patterns of spermatozoa in men with unexplained infertility. Hum Reprod 30:1014–1028

    Article  PubMed  Google Scholar 

  • Vieweg M, Dvorakova-Hortova K, Dudkova B, Waliszewski P, Otte M, Oels B, Hajimohammad A, Turley H, Schorsch M, Schuppe HC, Weidner W, Steger K, Paradowska-Dogan A (2015) Methylation analysis of histone H4K12ac-associated promoters in sperm of healthy donors and subfertile patients. Clin Epigenetics 7:31

    Article  PubMed  PubMed Central  Google Scholar 

  • Visser L, Westerveld GH, Korver CM, van Daalen SK, Hovingh SE, Rozen S, van der Veen F, Repping S (2009) Y chromosome gr/gr deletions are a risk factor for low semen quality. Hum Reprod 24:2667–2673

    Article  PubMed  CAS  Google Scholar 

  • Walsh TJ, Schembri M, Turek PJ, Chan JM, Carroll PR, Smith JF, Eisenberg ML, Van Den Eeden SK, Croughan MS (2010) Increased risk of high-grade prostate cancer among infertile men. Cancer 116:2140–2147

    PubMed  PubMed Central  Google Scholar 

  • Wang G, Guo Y, Zhou T, Shi X, Yu J, Yang Y, Wu Y, Wang J, Liu M, Chen X, Tu W, Zeng Y, Jiang M, Li S, Zhang P, Zhou Q, Zheng B, Yu C, Zhou Z, Guo X, Sha J (2013) In-depth proteomic analysis of the human sperm reveals complex protein compositions. J Proteomics 79:114–122

    Article  PubMed  CAS  Google Scholar 

  • Ward WS, Coffey DS (1991) DNA packaging and organization in mammalian spermatozoa: comparison with somatic cells. Biol Reprod 44:569–574

    Article  PubMed  CAS  Google Scholar 

  • Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, Iida N, Hoki Y, Murphy PJ, Toyoda A, Gotoh K, Hiura H, Arima T, Fujiyama A, Sado T, Shibata T, Nakano T, Lin H, Ichiyanagi K, Soloway PD, Sasaki H (2011) Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus. Science 332:848–852

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Wei B, Xu Z, Ruan J, Zhu M, Jin K, Zhou D, Hu Q, Wang Q, Wang Z (2012) MTHFR 677C>T and 1298A>C polymorphisms and male infertility risk: a meta-analysis. Mol Biol Rep 39:1997–2002

    Article  PubMed  CAS  Google Scholar 

  • Wei Y, Schatten H, Sun QY (2015) Environmental epigenetic inheritance through gametes and implications for human reproduction. Hum Reprod Update 21:194–208

    Article  PubMed  Google Scholar 

  • Wu SF, Zhang H, Cairns BR (2011) Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm. Genome Res 21:578–589

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Xu W, Hu H, Wang Z, Chen X, Yang F, Zhu Z, Fang P, Dai J, Wang L, Shi H, Li Z, Qiao Z (2012) Proteomic characteristics of spermatozoa in normozoospermic patients with infertility. J Proteomics 75:5426–5436

    Article  PubMed  CAS  Google Scholar 

  • Zariwala MA, Gee HY, Kurkowiak M, Al-Mutairi DA, Leigh MW, Hurd TW, Hjeij R, Dell SD, Chaki M, Dougherty GW, Adan M, Spear PC, Esteve-Rudd J, Loges NT, Rosenfeld M, Diaz KA, Olbrich H, Wolf WE, Sheridan E, Batten TF, Halbritter J, Porath JD, Kohl S, Lovric S, Hwang DY, Pittman JE, Burns KA, Ferkol TW, Sagel SD, Olivier KN, Morgan LC, Werner C, Raidt J, Pennekamp P, Sun Z, Zhou W, Airik R, Natarajan S, Allen SJ, Amirav I, Wieczorek D, Landwehr K, Nielsen K, Schwerk N, Sertic J, Kohler G, Washburn J, Levy S, Fan S, Koerner-Rettberg C, Amselem S, Williams DS, Mitchell BJ, Drummond IA, Otto EA, Omran H, Knowles MR, Hildebrandt F (2013) ZMYND10 is mutated in primary ciliary dyskinesia and interacts with LRRC6. Am J Hum Genet 93:336–345

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Zhao C, Huo R, Wang FQ, Lin M, Zhou ZM, Sha JH (2007) Identification of several proteins involved in regulation of sperm motility by proteomic analysis. Fertil Steril 87:436–438

    Article  PubMed  CAS  Google Scholar 

  • Zhao H, Xu J, Zhang H, Sun J, Sun Y, Wang Z, Liu J, Ding Q, Lu S, Shi R, You L, Qin Y, Zhao X, Lin X, Li X, Feng J, Wang L, Trent JM, Xu C, Gao Y, Zhang B, Gao X, Hu J, Chen H, Li G, Zhao J, Zou S, Jiang H, Hao C, Zhao Y, Ma J, Zheng SL, Chen ZJ (2012) A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia. Am J Hum Genet 90:900–906

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Zhu Y, Wu Y, Jin K, Lu H, Liu F, Guo Y, Yan F, Shi W, Liu Y, Cao X, Hu H, Zhu H, Guo X, Sha J, Li Z, Zhou Z (2013) Differential proteomic profiling in human spermatozoa that did or did not result in pregnancy via IVF and AID. Proteomics Clin Appl (in press)

  • Zou S, Li Z, Wang Y, Chen T, Song P, Chen J, He X, Xu P, Liang M, Luo K, Zhu X, Tian E, Du Q, Wen Z, Li Z, Wang M, Sha Y, Cao Y, Shi Y, Hu H (2014) Association study between polymorphisms of PRMT6, PEX10, SOX5, and nonobstructive azoospermia in the Han Chinese population. Biol Reprod 90:96

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

This work was supported in part by grants from the Spanish Ministry of Economy and Competitiveness (Ministerio de Economia y Competitividad; PI13/00699), from Fundacion Salud 2000 (SERONO 13-015) to RO and National Institutes of Health (5R01HD078641) to KIA and DTC.

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Carrell, D.T., Aston, K.I., Oliva, R. et al. The “omics” of human male infertility: integrating big data in a systems biology approach. Cell Tissue Res 363, 295–312 (2016). https://doi.org/10.1007/s00441-015-2320-7

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