Abstract
The present study aimed to establish a fluorescence-based polymerase chain reaction-linked single-strand conformation polymorphism (F-PCR-SSCP) assay for the identification of Fasciola spp. Based on the sequences of the second internal transcribed spacer (ITS-2) of the nuclear ribosomal DNA, we designed a set of genus-specific primers for the amplification of Fasciola ITS-2, with an estimated size of 140 bp. These primers were labelled by fluorescence dyes, and the PCR products were analyzed by capillary electrophoresis under non-denaturing conditions (F-PCR-SSCP). Capillary electrophoresis analysis of the fluorescence-labelled DNA fragments displayed three different peak profiles that allowed the accurate identification of Fasciola species: one single peak specific for either Fasciola hepatica or Fasciola gigantica and a doublet peak corresponding to the “intermediate” Fasciola. Validation of our novel method was performed using Fasciola specimens from different host animals from China, Spain, Nigeria, and Egypt. This F-PCR-SSCP assay provides a rapid, simple, and robust tool for the identification and differentiation between Fasciola spp.
Similar content being viewed by others
References
Agatsuma T, Arakawa Y, Iwagami M, Honzako Y, Cahyaningsih U, Kang SY, Hong SJ (2000) Molecular evidence of natural hybridization between Fasciola hepatica and F. gigantica. Parasitol Int 49:231–238
Ai L, Dong SJ, Zhang WY, Elsheikha HM, Mahmmod YS, Lin RQ, Yuan ZG, Shi YL, Huang WY, Zhu XQ (2010) Specific PCR-based assays for the identification of Fasciola species: their development, evaluation and potential usefulness in prevalence surveys. Ann Trop Med Parasitol 104:65–72
Alasaad S, Huang CQ, Li QY, Granados JE, García-Romero C, Pérez JM, Zhu XQ (2007) Characterisation of Fasciola samples from different host species and geographical localities in Spain by sequences of internal transcribed spacers of rDNA. Parasitol Res 101:1245–1250
Alasaad S, Granados JE, Cano-Manuel FJ, Meana A, Zhu XQ, Pérez JM (2008) Epidemiology of fasciolosis affecting Iberian ibex, Capra pyrenaica, from Sierra Nevada massif, southern Spain. Parasitol Res 102:751–755
Ashrafi K, Valero MA, Panova M, Periago MV, Massoud J, Mas-Coma S (2006) Phenotypic analysis of adults of Fasciola hepatica, Fasciola gigantica and intermediate forms from the endemic region of Gilan, Iran. Parasitol Int 55:249–260
Bernat M, Titos E, Clària J (2002) Rapid identification of single nucleotide polymorphisms by fluorescence-based capillary electrophoresis. Genet Mol Res 1:72–78
Cucher MA, Carnevale S, Prepelitchi L, Labbé JH, Wisnivesky-Colli C (2006) PCR diagnosis of Fasciola hepatica in field-collected Lymnaea columella and Lymnaea viatrix snails. Vet Parasitol 137:74–82
Gasser RB (1997) Mutation scanning methods for the analysis of parasite genes. Int J Parasitol 27:1449–1463
Gasser RB (2006) Molecular tools—advances, opportunities and prospects. Vet Parasitol 36:69–89
Gasser RB, Chilton NB (2001) Applications of single-strand conformation polymorphism (SSCP) to taxonomy, diagnosis, population genetics and molecular evolution of parasitic nematodes. Vet Parasitol 101:201–213
Gasser RB, Hu M, Chilton NB, Campbell BE, Jex AJ, Otranto D, Cafarchia C, Beveridge I, Zhu XQ (2006) Single-strand conformation polymorphism (SSCP) for the genetic analysis and identification of pathogens. Nat Protoc 1:3121–3128
Gunasekar KR, Tewari AK, Sreekumar C, Gupta SC, Rao JR (2008) Elucidation of genetic variability among different isolates of Fasciola gigantica (giant liver fluke) using random-amplified polymorphic DNA polymerase chain reaction. Parasitol Res 103:1075–1081
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Handt O, Höss M, Krings M, Pääbo S (1994) Ancient DNA-methodological challenges. Experientia 50:524–529
Haseeb AN, el-Shazly AM, Arafa MA, Morsy AT (2002) A review on fascioliasis in Egypt. J Egypt Soc Parasitol 32:317–354
Huang WY, He B, Wang CR, Zhu XQ (2004) Characterisation of Fasciola species from mainland China by ITS-2 ribosomal DNA sequence. Vet Parasitol 120:75–83
Ishii Y, Nakamura-Uchiyama F, Nawa Y (2002) A praziquantel ineffective fascioliasis case successfully treated with triclabendazole. Parasitol Int 51:205–209
Itagaki T, Tsutsumi K (1998) Triploid form of Fasciola in Japan: genetic relationships between Fasciola hepatica and Fasciola gigantica determined by ITS-2 sequence of nuclear rDNA. Int J Parasitol 28:777–781
Jianping W, Lehto M, Berglund A, Groop LC (2001) An automated fluorescent single strand conformation polymorphism technique for high throughput mutation screening. Chin Med J 114:1147–1150
Jones N, Ougham H, Thomas H, Pasakinskiene I (2009) Markers and mapping revisited: finding your gene. New Phytol 183:935–966
Kane RA, Bartley J, Stothard JR, Vercruysse J, Rollinson D, Southgate VR (2002) Application of single strand conformational polymorphism (SSCP) analysis with fluorescent primers for differentiation of Schistosoma haematobium group species. Trans R Soc Trop Med Hyg 96(Suppl):S235–S241
Kendall SB (1965) Relationships between the species of Fasciola and their molluscan hosts. Adv Parasitol 3:59–98
Krämer F, Schnieder T (1998) Sequence heterogeneity in a repetitive DNA element of Fasciola. Int J Parasitol 28:1923–1929
Le TH, De NV, Agatsuma T, Thi Nguyen TG, Nguyen QD, McManus DP, Blair D (2008) Human fascioliasis and the presence of hybrid/introgressed forms of Fasciola hepatica and Fasciola gigantica in Vietnam. Int J Parasitol 38:725–730
Li AX, D’Amello S, Paggl L, He F, Gasser RB, Lun ZR, Abollo E, Turchetto M, Zhu XQ (2005) Genetic evidence for the existence of sibling species within Contracaecum rudolphii Hartwich, 1964 and the validity of Contracaecum septentrionale Kreis, 1955 (Nematoda: Anisakidae). Parasitol Res 96:361–366
Lin RQ, Dong SJ, Nie K, Wang CR, Li AX, Song HQ, Huang WY, Zhu XQ (2007) Sequence analysis of the first internal transcribed spacer of rDNA supports the existence of an intermediate Fasciola between F. hepatica and F. gigantica in mainland China. Parasitol Res 101:813–817
Magalhães KG, Jannotti-Passos LK, Caldeira RL, Berne ME, Muller G, Carvalho OS, Lenzi HL (2008) Isolation and detection of Fasciola hepatica DNA in Lymnaea viatrix from formalin-fixed and paraffin-embedded tissues through multiplex-PCR. Vet Parasitol 152:333–338
Marcilla A, Bargues MD, Mas-Coma S (2002) A PCR-RFLP assay for the distinction between Fasciola hepatica and Fasciola gigantica. Mol Cell Probes 16:327–333
Mas-Coma S, Bargues MD (1997) Human liver flukes: a review. Res Rev Parasitol 57:145–218
Mas-Coma S, Esteban JG, Bargues MD (1999) Epidemiology of human fascioliasis: a review and proposed new classification. Bull Wld Hlth Org 77:340–346
Mas-Coma S, Bargues MD, Valero MA (2005) Fascioliasis and other plant-borne trematode zoonoses. Int J Parasitol 35:1255–1278
Mas-Coma S, Valero MA, Bargues MD (2009) Chapter 2. Fasciola, lymnaeids and human fascioliasis, with a global overview on disease transmission, epidemiology, evolutionary genetics, molecular epidemiology and control. Adv Parasitol 69:41–146
Pasqualotto AC, Denning DW, Anderson MJ (2007) A cautionary tale: lack of consistency in allele sizes between two laboratories for a published multilocus microsatellite typing system. J Clin Microbiol 45:522–528
Periago MV, Valero MA, El Sayed M, Ashrafi K, El Wakeel A, Mohamed MY, Desquesnes M, Curtale F, Mas-Coma S (2008) First phenotypic description of Fasciola hepatica/Fasciola gigantica intermediate forms from the human endemic area of the Nile Delta, Egypt. Infect Genet Evol 8:51–58
Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana, Totowa, pp 365–386
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor
Spithill TW, Dalton JP (1998) Progress in development of liver fluke vaccines. Parasitol Today 14:224–822
Susca A, Stea G, Perrone G (2007) Rapid polymerase chain reaction (PCR)-single-stranded conformational polymorphism (SSCP) screening method for the identification of Aspergillus section Nigri species by the detection of calmodulin nucleotide variations. Food Addit Contam 24:1148–1153
Velusamy R, Singh BP, Raina OK (2004) Detection of Fasciola gigantica infection in snails by polymerase chain reaction. Vet Parasitol 120:85–90
Yamaguti S (1958) Systema helminthum, vol. I. The digenetic trematodes of vertebrates. Interscience, New York
Zhu XQ, D'Amelio S, Palm HW, Paggi L, George-Nascimento M, Gasser RB (2002) SSCP-based identification of members within the Pseudoterranova decipiens complex (Nematoda: Ascaridoidea: Anisakidae) using genetic markers in the internal transcribed spacers of ribosomal DNA. Parasitology 124:615–623
Acknowledgements
The authors are indebted to Ana L. García-Pérez and Ramón A. Juste (Sanidad Animal, Instituto Vasco de Investigación y Desarrollo Agrario, NEIKER), and Margarita Buades (Head of the Sección de Mataderos, Islas Baleares) for providing Fasciola samples and for their helpful comments. This project was funded by the programme “Ayudas a grupos de investigación” to RNM118 investigation group (Spain). XQZ is supported by the State Key Laboratory of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences. The experiments comply with the current laws of the countries in which the experiments were performed.
Author information
Authors and Affiliations
Corresponding authors
Rights and permissions
About this article
Cite this article
Alasaad, S., Soriguer, R.C., Abu-Madi, M. et al. A fluorescence-based polymerase chain reaction-linked single-strand conformation polymorphism (F-PCR-SSCP) assay for the identification of Fasciola spp.. Parasitol Res 108, 1513–1517 (2011). https://doi.org/10.1007/s00436-010-2209-z
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00436-010-2209-z