Abstract
Agricultural production—a major contributing factor towards global food supply—is highly reliant on field crops which are under severe threats ranging from poor soil quality, biotic, abiotic stresses and changing climatic conditions. To overcome these challenges, larger exertions are required to boost production of agricultural crops in a defensible mode. Since the evolution of fertilizers and pesticides, global crop productivity has experienced an unprecedented elevation, but at the cost of environmental and ecological unsustainability. To enhance the agricultural outputs in a sustainable way, the novel and eco-friendly strategies must be employed in agriculture, which would lead to reduced use of hazardous chemicals. Thus, the utilization of our knowledge about natural growth stimulators can lead to decrease reliance on fertilizers and pesticide which are widely used for increasing crop productivity. Among beneficial microbes, plant growth promoting bacteria offers excellent opportunities for their wide utilization in agriculture to manage soil quality and other factors which correspond to limited growth and yield output of major field crops. The aim of this review is to examine the potential role of plant growth stimulating bacteria in soil fertility and enabling crops to cope with biotic and abiotic challenges.
Similar content being viewed by others
References
Abbas T, Zahir ZA, Naveed M (2017) Bioherbicidal activity of allelopathic bacteria against weeds associated with wheat and their effects on growth of wheat under axenic conditions. Biocontrol 62:719–730
Abd_Allah EF, Alqarawi AA, Hashem A, Radhakrishnan R, Al-Huqail AA, Al-Otibi FON, Egamberdieva D (2018) Endophytic bacterium Bacillus subtilis (BERA 71) improves salt tolerance in chickpea plants by regulating the plant defense mechanisms. J Plant Interact 13:37–44
Adesemoye AO, Torbert HA, Kloepper JW (2008) Enhanced plant nutrient use efficiency with PGPR and AMF in an integrated nutrient management system. Can J Microbiol 54:876–886
Adesemoye AO, Torbert HA, Kloepper JW (2009) Plant growth-promoting rhizobacteria allow reduced application rates of chemical fertilizers. Microbial Ecol 58:921–929
Alori ET, Glick BR, Babalola OO (2017) Microbial phosphorus solubilization and its potential for use in sustainable agriculture. Front Microbiol 8:971
Arif MS, Shahzad SM, Yasmeen T, Riaz M, Ashraf M, Ashraf MA, Kausar R (2017) Improving plant phosphorus (P) acquisition by phosphate-solubilizing bacteria. In: Essential plant nutrients. Springer, Cham, pp 513–556
Armada E, Probanza A, Roldán A, Azcón R (2016) Native plant growth promoting bacteria Bacillus thuringiensis and mixed or individual mycorrhizal species improved drought tolerance and oxidative metabolism in Lavandula dentata plants. J Plant Physiol 192:1–12
Awla HK, Kadir J, Othman R, Rashid TS, Hamid S, Wong MY (2017) Plant growth-promoting abilities and biocontrol efficacy of Streptomyces sp. UPMRS4 against Pyricularia oryzae. Biol Cont 112:55–63
Bagyalakshmi B, Ponmurugan P, Balamurugan A (2017) Potassium solubilization, plant growth promoting substances by potassium solubilizing bacteria (KSB) from southern Indian tea plantation soil. Biocatal Agric Biotechnol 12:116–124
Balseiro-Romero M, Gkorezis P, Kidd PS, Van Hamme J, Weyens N, Monterroso C, Vangronsveld J (2017) Use of plant growth promoting bacterial strains to improve Cytisus striatus and Lupinus luteus development for potential application in phytoremediation. Sci Total Environ 581:676–688
Barnawal D, Bharti N, Pandey SS, Pandey A, Chanotiya CS, Kalra A (2017) Plant growth promoting rhizobacteria enhances wheat salt and drought stress tolerance by altering endogenous phytohormone levels and TaCTR1/TaDREB2 expression. Physiol Plant 161:502–5014
Bashan Y (1998) Inoculants of plant growth-promoting bacteria for use in agriculture. Biotechnol Adv 16:729–770
Bashan Y, de-Bashan LE, Prabhu SR, Hernandez JP (2014) Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998–2013). Plant Soil 378:1–33
Berendsen RL, Vismans G, Yu K, Song Y, Jonge R, Burgman WP, Pieterse CM (2018) The disease-induced assemblage of a plant-beneficial bacterial consortium. ISME J 12:1496
Berg G (2009) Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture. App Microbiol Biotechnol 84:11–18
Burd GI, Dixon DG, Glick BR (2000) Plant growth-promoting bacteria that decrease heavy metal toxicity in plants. Can J Microbiol 46:237–245
Chatterjee P, Samaddar S, Anandham R, Kang Y, Kim K, Selvakumar G, Sa T (2017) Beneficial soil bacterium Pseudomonas frederiksbergensis OS261 augments salt tolerance and promotes red pepper plant growth. Front Plant Sci 8:705
Cheng X, Etalo DW, van de Mortel JE, Dekkers E, Nguyen L, Medema MH, Raaijmakers JM (2017) Genome-wide analysis of bacterial determinants of plant growth promotion and induced systemic resistance by Pseudomonas fluorescens. Environ Microbiol 19:4638–4656
Chung EJ, Hossain MT, Khan A, Kim KH, Jeon CO, Chung YR (2015) Bacillus oryzicola sp. nov., an endophytic bacterium isolated from the roots of rice with antimicrobial, plant growth promoting, and systemic resistance inducing activities in rice. Plant Pathol J 31(2):152
Chung JH, Song GC, Ryu CM (2016) Sweet scents from good bacteria: case studies on bacterial volatile compounds for plant growth and immunity. Plant Mol Biol 90:677–687
Compant S, Duffy B, Nowak J, Clément C, Barka EA (2005) Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71:4951–4959
Defez R, Andreozzi A, Bianco C (2017) The overproduction of indole-3-acetic acid (IAA) in endophytes upregulates nitrogen fixation in both bacterial cultures and inoculated rice plants. Microb Ecol 74:441–452
Dinesh R, Anandaraj M, Kumar A, Bini YK, Subila KP, Aravind R (2015) Isolation, characterization, and evaluation of multi-trait plant growth promoting rhizobacteria for their growth promoting and disease suppressing effects on ginger. Microbiol Res 173:34–43
East R (2013) Soil science comes to life. Nature 501:S18
Egamberdieva D (2009) Alleviation of salt stress by plant growth regulators and IAA producing bacteria in wheat. Acta Physiol Plant 31:861–864
Egamberdieva D, Wirth SJ, Shurigin VV, Hashem A, Abd_Allah EF (2017) Endophytic bacteria improve plant growth, symbiotic performance of chickpea (Cicer arietinum L.) and induce suppression of root rot caused by Fusarium solani under salt stress. Front Microbiol 8:1887
Etesami H (2018) Can interaction between silicon and plant growth promoting rhizobacteria benefit in alleviating abiotic and biotic stresses in crop plants? Agric Ecosyst Environ 253:98–112
García JE, Maroniche G, Creus C, Suárez-Rodríguez R, Ramirez-Trujillo JA, Groppa MD (2017) In vitro PGPR properties and osmotic tolerance of different Azospirillum native strains and their effects on growth of maize under drought stress. Microbiol Res 202:21–29
Glick BR (2014) Bacteria with ACC deaminase can promote plant growth and help to feed the world. Microbiol Res 169:30–39
Gouda S, Kerry RG, Das G, Paramithiotis S, Shin HS, Patra JK (2018) Revitalization of plant growth promoting rhizobacteria for sustainable development in agriculture. Microbiol Res 206:131–140
Gupta G, Panwar J, Akhtar MS, Jha PN (2012) Endophytic nitrogen-fixing bacteria as biofertilizer. In: Sustainable agriculture reviews. Springer, Dordrecht, pp 183–221
Gururani MA, Upadhyaya CP, Baskar V, Venkatesh J, Nookaraju A, Park SW (2013) Plant growth-promoting rhizobacteria enhance abiotic stress tolerance in Solanum tuberosum through inducing changes in the expression of ROS-scavenging enzymes and improved photosynthetic performance. J Plant Growth Regul 32:245–258
Hafeez FY, Yasmin S, Ariani D, Zafar Y, Malik KA (2006) Plant growth-promoting bacteria as biofertilizer. Agron Sust Dev 26:143–150
Islam F, Yasmeen T, Arif MS, Riaz M, Shahzad SM, Imran Q, Ali I (2016a) Combined ability of chromium (Cr) tolerant plant growth promoting bacteria (PGPB) and salicylic acid (SA) in attenuation of chromium stress in maize plants. Plant Physiol Biochem 108:456–467
Islam S, Akanda AM, Prova A, Islam MT, Hossain MM (2016b) Isolation and identification of plant growth promoting rhizobacteria from cucumber rhizosphere and their effect on plant growth promotion and disease suppression. Front Microbiol 6:1360
Islam F, Yasmeen T, Arif MS, Ali S, Ali B, Hameed S, Zhou W (2016c) Plant growth promoting bacteria confer salt tolerance in Vigna radiata by up-regulating antioxidant defense and biological soil fertility. Plant Growth Regul 80:23–36
Jacoby R, Peukert M, Succurro A, Koprivova A, Kopriva S (2017) The role of soil microorganisms in plant mineral nutrition—current knowledge and future directions. Front Plant Sci 8:1617
Kadmiri IM, Chaouqui L, Azaroual SE, Sijilmassi B, Yaakoubi K, Wahby I (2018) Phosphate-solubilizing and auxin-producing rhizobacteria promote plant growth under saline conditions. Arab J Sci Eng 1–13
Kandel SL, Firrincieli A, Joubert PM, Okubara PA, Leston ND, McGeorge KM, Doty SL (2017) An in vitro study of bio-control and plant growth promotion potential of Salicaceae endophytes. Front Microbiol 8:386
Kasim WA, Osman ME, Omar MN, El-Daim IAA, Bejai S, Meijer J (2013) Control of drought stress in wheat using plant-growth-promoting bacteria. J Plant Growth Regul 32:122–130
Khan MS, Zaidi A, Wani PA, Oves M (2009) Role of plant growth promoting rhizobacteria in the remediation of metal contaminated soils. Environ Chem Lett 7:1–19
Khan N, Bano A, Babar MA (2017) The root growth of wheat plants, the water conservation and fertility status of sandy soils influenced by plant growth promoting rhizobacteria. Symbiosis 72:195–205
Kim MJ, Radhakrishnan R, Kang SM, You YH, Jeong EJ, Kim JG, Lee IJ (2017) Plant growth promoting effect of Bacillus amyloliquefaciens H-2-5 on crop plants and influence on physiological changes in soybean under soil salinity. Physiol Mol Biol Plants 23:571–580
Kong Z, Deng Z, Glick BR, Wei G, Chou M (2017) A nodule endophytic plant growth-promoting Pseudomonas and its effects on growth, nodulation and metal uptake in Medicago lupulina under copper stress. Ann Microbiol 67:49–58
Li HB, Singh RK, Singh P, Song QQ, Xing YX, Yang LT, Li YR (2017) Genetic diversity of nitrogen-fixing and plant growth promoting Pseudomonas species isolated from sugarcane rhizosphere. Front Microbiol 8:1268
Liu K, McInroy JA, Hu CH, Kloepper JW (2018) Mixtures of plant-growth-promoting rhizobacteria enhance biological control of multiple plant diseases and plant-growth promotion in the presence of pathogens. Plant Dis 102:67–72
Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol 63:541–556
Ma Y, Prasad MNV, Rajkumar M, Freitas H (2011) Plant growth promoting rhizobacteria and endophytes accelerate phytoremediation of metalliferous soils. Biotechnol Adv 29:248–258
Ma Y, Rajkumar M, Zhang C, Freitas H (2016) Inoculation of Brassica oxyrrhina with plant growth promoting bacteria for the improvement of heavy metal phytoremediation under drought conditions. J Hazard Mater 320:36–44
MacLean AM, Finan TM, Sadowsky MJ (2007) Genomes of the symbiotic nitrogen-fixing bacteria of legumes. Plant Physiol 144:615–622
Majeed A, Abbasi MK, Hameed S, Imran A, Rahim N (2015) Isolation and characterization of plant growth-promoting rhizobacteria from wheat rhizosphere and their effect on plant growth promotion. Front Microbiol 6:198
Majeed A, Muhammad Z, Islam S, Ullah Z, Ullah R (2017) Cyanobacterial application as biofertilizers in rice fields: role in growth promotion and crop productivity. PSM Microbiol 2:47–50
Mantelin S, Touraine B (2004) Plant growth-promoting bacteria and nitrate availability: impacts on root development and nitrate uptake. J Exp Bot 55:27–34
Martins MR, Jantalia CP, Reis VM, Döwich I, Polidoro JC, Alves BJR, Urquiaga S (2018) Impact of plant growth-promoting bacteria on grain yield, protein content, and urea-15 N recovery by maize in a Cerrado Oxisol. Plant Soil 422:239–250
Mayak S, Tirosh T, Glick BR (2004) Plant growth-promoting bacteria confer resistance in tomato plants to salt stress. Plant Physiol Biochem 42:565–572
Muller A, Schader C, Scialabba NEH, Brüggemann J, Isensee A, Erb KH, Niggli U (2017) Strategies for feeding the world more sustainably with organic agriculture. Nat Commun 8:1290
Nautiyal CS, Srivastava S, Chauhan PS, Seem K, Mishra A, Sopory SK (2013) Plant growth-promoting bacteria Bacillus amyloliquefaciens NBRISN13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress. Plant Physiol Biochem 66:1–9
Otieno N, Lally RD, Kiwanuka S, Lloyd A, Ryan D, Germaine KJ, Dowling DN (2015) Plant growth promotion induced by phosphate solubilizing endophytic Pseudomonas isolates. Front Microbiol 6:745
Paramanandham P, Rajkumari J, Pattnaik S, Bus S (2017) Biocontrol potential against Fusarium oxysporum f. sp. lycopersici and Alternaria solani and tomato plant growth due to plant growth-promoting rhizobacteria. Int J Veg Sci 23:294–303
Pérez-de-Luque A, Tille S, Johnson I, Pascual-Pardo D, Ton J, Cameron DD (2017) The interactive effects of arbuscular mycorrhiza and plant growth-promoting rhizobacteria synergistically enhance host plant defenses against pathogens. Sci Rep 7:16409
Pham VT, Rediers H, Ghequire MG, Nguyen HH, De Mot R, Vanderleyden J, Spaepen S (2017) The plant growth-promoting effect of the nitrogen-fixing endophyte Pseudomonas stutzeri A15. Arch Microbiol 199:513–517
Pineda A, Kaplan I, Bezemer TM (2017) Steering soil microbiomes to suppress aboveground insect pests. Trends Plant Sci 22:770–778
Qiao Q, Wang F, Zhang J, Chen Y, Zhang C, Liu G, Zhang J (2017) The variation in the rhizosphere microbiome of cotton with soil type, genotype and developmental stage. Sci Rep 7:3940
Raheem A, Shaposhnikov A, Belimov AA, Dodd IC, Ali B (2018) Auxin production by rhizobacteria was associated with improved yield of wheat (Triticum aestivum L.) under drought stress. Arch Agron Soil Sci 64:574–587
Rahman M, Sabir AA, Mukta JA, Khan MMA, Mohi-Ud-Din M, Miah MG, Islam MT (2018) Plant probiotic bacteria Bacillus and Paraburkholderia improve growth, yield and content of antioxidants in strawberry fruit. Sci Rep 8:2504
Rajkumar M, Freitas H (2008) Influence of metal resistant-plant growth-promoting bacteria on the growth of Ricinus communis in soil contaminated with heavy metals. Chemosphere 71:834–842
Remans R, Beebe S, Blair M, Manrique G, Tovar E, Rao I, Vanderleyden J (2008) Physiological and genetic analysis of root responsiveness to auxin-producing plant growth-promoting bacteria in common bean (Phaseolus vulgaris L.). Plant Soil 302:149–161
Richardson AE, Barea JM, McNeill AM, Prigent-Combaret C (2009) Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant Soil 321:305–339
Safronova VI, Piluzza G, Zinovkina NY, Kimeklis AK, Belimov AA, Bullitta S (2012) Relationships between pasture legumes, rhizobacteria and nodule bacteria in heavy metal polluted mine waste of SW Sardinia. Symbiosis 58:149–159
Saleem M, Asghar HN, Zahir ZA, Shahid M (2018) Impact of lead tolerant plant growth promoting rhizobacteria on growth, physiology, antioxidant activities, yield and lead content in sunflower in lead contaminated soil. Chemosphere 195:606–614
Sandhya V, Ali SZ, Grover M, Reddy G, Venkateswarlu B (2010) Effect of plant growth promoting Pseudomonas spp. on compatible solutes, antioxidant status and plant growth of maize under drought stress. Plant Growth Regul 62:21–30
Saraf M, Pandya U, Thakkar A (2014) Role of allelochemicals in plant growth promoting rhizobacteria for biocontrol of phytopathogens. Microbiol Res 169:18–29
Sarkar A, Ghosh PK, Pramanik K, Mitra S, Soren T, Pandey S, Maiti TK (2018) A halotolerant Enterobacter sp. displaying ACC deaminase activity promotes rice seedling growth under salt stress. Res Microbiol 169:20–32
Shahzad R, Khan AL, Bilal S, Waqas M, Kang SM, Lee IJ (2017) Inoculation of abscisic acid-producing endophytic bacteria enhances salinity stress tolerance in Oryza sativa. Environ Exp Bot 136:68–77
Shameer S, Prasad T (2018) Plant growth promoting rhizobacteria for sustainable agricultural practices with special reference to biotic and abiotic stresses. Plant Growth Regul 1–13
Sharma IP, Chandra S, Kumar N, Chandra D (2017) PGPR: heart of soil and their role in soil fertility. In: Agriculturally important microbes for sustainable agriculture. Springer, Singapore, pp 51–67
Shrivastava P, Kumar R (2015) Soil salinity: a serious environmental issue and plant growth promoting bacteria as one of the tools for its alleviation. Saudi J Biol Sci 22:123–131
Singh M, Awasthi A, Soni SK, Singh R, Verma RK, Kalra A (2015) Complementarity among plant growth promoting traits in rhizospheric bacterial communities promotes plant growth. Sci Rep 5:15500
Sobariu DL, Fertu DIT, Diaconu M, Pavel LV, Hlihor RM, Drăgoi EN, Gavrilescu M (2017) Rhizobacteria and plant symbiosis in heavy metal uptake and its implications for soil bioremediation. New Biotechnol 39:125–134
Stokstad E (2016) The nitrogen fix. Science 353:1225–1227
Suzuki N, Rivero RM, Shulaev V, Blumwald E, Mittler R (2014) Abiotic and biotic stress combinations. New Phytol 203:32–43
Touceda-González M, Brader G, Antonielli L, Ravindran VB, Waldner G, Friesl-Hanl W, Sessitsch A (2015) Combined amendment of immobilizers and the plant growth-promoting strain Burkholderia phytofirmans PsJN favours plant growth and reduces heavy metal uptake. Soil Biol Biochem 91:140–150
Ullah A, Heng S, Munis MFH, Fahad S, Yang X (2015) Phytoremediation of heavy metals assisted by plant growth promoting (PGP) bacteria: a review. Environ Exp Bot 117:28–40
Van Kernebeek HR, Oosting SJ, Van Ittersum MK, Bikker P, De Boer IJ (2016) Saving land to feed a growing population: consequences for consumption of crop and livestock products. Int J Life Cycle Assess 21:677–687
Verma SK, Kingsley K, Bergen M, English C, Elmore M, Kharwar RN, White JF (2018) Bacterial endophytes from rice cut grass (Leersia oryzoides L.) increase growth, promote root gravitropic response, stimulate root hair formation, and protect rice seedlings from disease. Plant Soil 422:223–238
Vurukonda S, Giovanardi D, Stefani E (2018) Plant growth promoting and biocontrol activity of Streptomyces spp. as endophytes. Int J Mol Sci 19:952
Xie J, Shu P, Strobel G, Chen J, Wei J, Xiang Z, Zhou Z (2017) Pantoea agglomerans SWg2 colonizes mulberry tissues, promotes disease protection and seedling growth. Biol Cont 113:9–17
Xun F, Xie B, Liu S, Guo C (2015) Effect of plant growth-promoting bacteria (PGPR) and arbuscular mycorrhizal fungi (AMF) inoculation on oats in saline-alkali soil contaminated by petroleum to enhance phytoremediation. Environ Sci Pollut Res 22:598–608
Zaidi A, Khan MS, Ahmad E, Saif S, Rizvi A (2017a) Growth stimulation, nutrient quality and management of vegetable diseases using plant growth-promoting rhizobacteria. In: Probiotics in agroecosystem. Springer, Singapore, pp 313–328
Zaidi A, Khan MS, Saif S, Rizvi A, Ahmed B, Shahid M (2017b) Role of nitrogen-fixing plant growth-promoting rhizobacteria in sustainable production of vegetables: current perspective. In: Microbial strategies for vegetable production. Springer, Cham, pp 49–79
Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Firestone MK (2018) Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol 3:470–480
Zhao D, Zhao H, Zhao D, Zhu X, Wang Y, Duan Y, Chen L (2018) Isolation and identification of bacteria from rhizosphere soil and their effect on plant growth promotion and root-knot nematode disease. Biol Cont 119:12–19
Zheng BX, Hao XL, Ding K, Zhou GW, Chen QL, Zhang JB, Zhu YG (2017) Long-term nitrogen fertilization decreased the abundance of inorganic phosphate solubilizing bacteria in an alkaline soil. Sci Rep 7:42284
Zipfel C, Oldroyd GE (2017) Plant signaling in symbiosis and immunity. Nature 543:328
Author information
Authors and Affiliations
Contributions
All the authors have equal contribution. All authors read and approved the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that there is no conflict of interest.
Additional information
Communicated by Neal Stewart.
Rights and permissions
About this article
Cite this article
Majeed, A., Muhammad, Z. & Ahmad, H. Plant growth promoting bacteria: role in soil improvement, abiotic and biotic stress management of crops. Plant Cell Rep 37, 1599–1609 (2018). https://doi.org/10.1007/s00299-018-2341-2
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00299-018-2341-2