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Biology, dynamics, and applications of transposable elements in basidiomycete fungi

  • Mini-Review
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Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

The phylum Basidiomycota includes filamentous fungi and yeast species with different ecological and genomic characteristics. Transposable elements (TEs) are abundant components of most eukaryotic genomes, and their transition from being genomic parasites to key drivers of genomic architecture, functionality, and evolution is a subject receiving much attention. In light of the abundant genomic information released during the last decade, the aims of this mini-review are to discuss the dynamics and impact of TEs in basidiomycete fungi. To do this, we surveyed and explored data from 75 genomes, which encompass the phylogenetic diversity of the phylum Basidiomycota. We describe annotation approaches and analyze TE distribution in the context of species phylogeny and genome size. Further, we review the most relevant literature about the role of TEs in species lifestyle, their impact on genome architecture and functionality, and the defense mechanisms evolved to control their proliferation. Finally, we discuss potential applications of TEs that can drive future innovations in fungal research

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  1. Genetics and Microbiology Research Group, Department of Agrarian Production, Public University of Navarre, 31006, Pamplona, Spain

    Raúl Castanera, Alessandra Borgognone, Antonio G. Pisabarro & Lucía Ramírez

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  1. Raúl Castanera
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  2. Alessandra Borgognone
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  3. Antonio G. Pisabarro
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  4. Lucía Ramírez
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Correspondence to Lucía Ramírez.

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This work was supported by Spanish National Research Plan (Projects AGL2011 30495 and AGL2014-55971-R) and FEDER funds, Public University of Navarre ( http://www.unavarra.es ). A.B holds a Ph.D. Studentship from the Public University of Navarre. R.C. holds an FPI Ph.D. studentship from the Spanish Ministry of Economy, Industry and Competitiveness.

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Castanera, R., Borgognone, A., Pisabarro, A.G. et al. Biology, dynamics, and applications of transposable elements in basidiomycete fungi. Appl Microbiol Biotechnol 101, 1337–1350 (2017). https://doi.org/10.1007/s00253-017-8097-8

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