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Characterization of a gene cluster and its putative promoter region for violacein biosynthesis in Pseudoalteromonas sp. 520P1

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Abstract

Violacein, a purple pigment produced by some Gram-negative bacteria, has various physiological properties, such as antitrypanosomal and antitumoral activities. A gene cluster that encodes five enzymes, VioA–VioE, is responsible for synthesizing violacein. The expression of these enzymes is known to be regulated by a quorum sensing mechanism in Chromobacterium violaceum and Pseudoalteromonas sp. 520P1. To clarify the molecular mechanism of regulation of violacein synthesis, we cloned and characterized the gene cluster from Pseudoalteromonas sp. 520P1. A fosmid library of strain 520P1 was constructed and clones containing the gene cluster were isolated. The gene cluster was 7383 bp in length and encoded five enzyme genes, vioAvioE. A putative promoter sequence was predicted in the upstream region of the cluster. In the promoter region, two contiguous palindromic sequences, a possible quorum sensing regulatory site, were found. However, the isolated Escherichia coli clones harboring the gene cluster and its upstream region were unable to produce violacein probably due to the lack of quorum sensing machinery for expression. To further examine the ability of vioAvioE genes to synthesize violacein in vivo, the upstream promoter region was removed from the cluster and heterologous expression of the treated cluster was performed in E. coli using a recombinant pET vector with T7 promoter. Purple pigment was expressed, and the pigment was identified to be violacein using ultraviolet and visible light and HPLC analysis. These results will contribute to further studies regarding violacein biosynthesis and its mass production.

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References

  • Ahmetagic A, Pemberton JM (2010) Stable high level expression of the violacein indolocarbazole anti-tumour gene cluster and the Streptomyces lividans amyA gene in E. coli K12. Plasmid 63:79–85

    Article  CAS  Google Scholar 

  • Andrighetti-Fröhner CR, Antonio RV, Creczynski-Pasa TB, Barardi CR, Simões CM (2003) Cytotoxicity and potential antiviral evaluation of violacein produced by Chromobacterium violaceum. Mem Inst Oswaldo Cruz 98:843–848

    Article  Google Scholar 

  • August PR, Grossman TH, Minor C, Draper MP, MacNeil IA, Pemberton JM, Call KM, Holt D, Osburne MS (2000) Sequence analysis and functional characterization of the violacein biosynthetic pathway from Chromobacterium violaceum. J Mol Microbiol Biotechnol 2:513–519

    CAS  PubMed  Google Scholar 

  • Balibar CJ, Walsh CT (2006) In vitro biosynthesis of violacein from L-tryptophan by the enzymes VioA-E from Chromobacterium violaceum. Biochemistry 45:15444–15457

    Article  CAS  Google Scholar 

  • Becker MH, Brucker RM, Schwantes CR, Harris RN, Minbiole KPC (2009) The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus. Appl Environ Microbiol 75:6635–6638

    Article  CAS  Google Scholar 

  • Brady SF, Chao CJ, Handelsman J, Clardy J (2001) Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. Org Lett 3:1981–1984

    Article  CAS  Google Scholar 

  • Devine JH, Countryman C, Baldwin TO (1988) Nucleotide sequence of the luxR and luxI genes and the structure of the primary regulatory region of the lux regulon of Vibrio fischeri ATCC 7744. Biochemistry 27:837–842

    Article  CAS  Google Scholar 

  • Durán N, Menck CFM (2001) Chromobacterium violaceum: a review of pharmacological and industiral perspectives. Crit Rev Microbiol 27:201–222

    Article  Google Scholar 

  • Gauthier MJ (1982) Validation of the name Alteromonas luteoviolacea. Int J Syst Bacteriol 32:82–86

    Article  Google Scholar 

  • Hakvåg S, Fjaervik E, Klinkenberg G, Borgos SE, Josefsen KD, Ellingsen TE, Zotchev SB (2009) Violacein-producing Collimonas sp. from the sea surface microlayer of coastal waters in Trøndelag, Norway. Mar Drugs 7:576–588

    Article  Google Scholar 

  • Hirano S, Asamizu S, Onaka H, Shiro Y, Nagano S (2008) Crystal structure of VioE, a key player in the construction of the molecular skeleton of violacein. J Biol Chem 283:6459–6466

    Article  CAS  Google Scholar 

  • Hrvatin S, Piel J (2007) Rapid isolation of rare clones from highly complex DNA libraries by PCR analysis of liquid gel pools. J Microbiol Methods 68:434–436

    Article  CAS  Google Scholar 

  • Jiang PX, Wang HS, Zhang C, Lou K, Xing XH (2010) Reconstruction of the violacein biosynthetic pathway from Duganella sp. B2 in different heterologous hosts. Appl Microbiol Biotechnol 86:1077–1088

    Article  CAS  Google Scholar 

  • Leon LL, Miranda CC, De Souza AO, Durán N (2001) Antileishmanial activity of the violacein extracted from Chromobacterium violaceum. J Antimicrob Chemother 48:449–450

    Article  CAS  Google Scholar 

  • Lopes SCP, Blanco YC, Justo GZ, Nogueira PA, Rodrigues FLS, Goelnitz U, Wunderlich G, Facchini G, Brocchi M, Duran N, Costa FTM (2009) Violacein extracted from Chromobacterium violaceum inhibits Plasmodium growth in vitro and in vivo. Antimicrob Agents Chemother 53:2149–2152

    Article  CAS  Google Scholar 

  • McCarthy SA, Sakata T, Kakimoto D, Johnson RM (1985) Production and isolation of purple pigment by Alteromonas luteoviolacea. Bull Jpn Soc Sci Fish 51:479–484

    Article  CAS  Google Scholar 

  • McClean KH, Winson MK, Fish L, Taylor A, Chhabra SR, Camara M, Daykin M, Lamb JH, Swift S, Bycroft BW, Stewart GSAB, Williams P (1997) Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 143:3703–3711

    Article  CAS  Google Scholar 

  • Melo PS, Maria SS, Vidal BC, Haun M, Durán N (2000) Violacein cytotoxicity and induction of apoptosis in V79 cells. In Vitro Cell Dev Biol Anim 36:539–543

    Article  CAS  Google Scholar 

  • Momen AZ, Hoshino T (2000) Biosynthesis of violacein: intact incorporation of the tryptophan molecule on the oxindole side, with intramolecular rearrangement of the indole ring on the 5-hydroxyindole side. Biosci Biotechnol Biochem 64:539–549

    Article  CAS  Google Scholar 

  • Morohoshi T, Fukamachi K, Kato M, Kato N, Ikeda T (2010) Regulation of the violacein biosynthetic gene cluster by acylhomoserine lactone-mediated quorum sensing in Chromobacterium violaceum ATCC 12472. Biosci Biotechnol Biochem 74:2116–2119

    Article  CAS  Google Scholar 

  • Pantanella F, Berlutti F, Passariello C, Sarli S, Morea C, Schippa S (2007) Violacein and biofilm production in Janthinobacterium lividum. J Appl Microbiol 102:992–999

    CAS  PubMed  Google Scholar 

  • Pemberton JM, Vincent KM, Penfold RJ (1991) Cloning and heterologous expression of the violacein biosynthesis gene cluster from Chromobacterium violaceum. Curr Microbiol 22:355–358

    Article  CAS  Google Scholar 

  • Ryan KS, Balibar CJ, Turo KE, Walsh CT, Drennan CL (2008) The violacein biosynthetic enzyme VioE shares a fold with lipoprotein transporter proteins. J Biol Chem 283:6467–6475

    Article  CAS  Google Scholar 

  • Sánchez C, Braña AF, Méndez C, Salas JA (2006) Reevaluation of the violacein biosynthetic pathway and its relationship to indolocarbazole biosynthesis. Chembiochem 7:1231–1240

    Article  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  Google Scholar 

  • Schloss PD, Allen HK, Klimowicz AK, Mlot C, Gross JA, Savengsuksa S, McEllin J, Clardy J, Ruess RW, Handelsman J (2010) Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin. DNA Cell Biol 29:1–9

    Article  Google Scholar 

  • Shirata A, Tsukamoto T, Yasui H, Hata H, Hayasaka S, Kojima A, Kato H (2000) Isolation of bacteria producing bluish-purple pigment and use for dyeing. J Agrc Res Q 34:131–140

    Google Scholar 

  • Stevens AM, Dolan KM, Greenberg EP (1994) Synergistic binding of the Vibrio fischeri LuxR transcriptional activator domain and RNA polymerase to the lux promoter region. Proc Natl Acad Sci USA 91:12619–12623

    Article  CAS  Google Scholar 

  • Studier FM (2005) Protein production by auto-induction in high-density shaking cultures. Protein Expr Purif 41:207–234

    Article  CAS  Google Scholar 

  • Taga N (1968) Some ecological aspects of marine bacteria in the Kuroshio current. Bull Misaki Mar Biol Inst Kyoto Univ 12:65–76

    Google Scholar 

  • Thomas T, Evans FF, Schleheck D, Mai-Prochnow A, Burke C, Penesyan A, Dalisay DS, Stelzer-Braid S, Saunders N, Johnson J, Ferriera S, Kjelleberg S, Egan S (2008) Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment. PLoS ONE 3:e3252

    Article  Google Scholar 

  • Wang Y, Ikawa A, Okaue S, Taniguchi S, Osaka I, Yoshimoto A, Kishida Y, Arakawa R, Enomoto K (2008) Quorum sensing signaling molecules involved in the production of violacein by Pseudoalteromonas. Biosci Biotechnol Biochem 72:1958–1961

    Article  CAS  Google Scholar 

  • Wang HS, Jiang PX, Lu Y, Ruan ZY, Jiang RB, Xing XH, Lou K, Wei D (2009) Optimization of culture conditions for violacein production by a new strain of Duganella sp. B2. Biochem Eng J 44:119–124

    Article  CAS  Google Scholar 

  • Yada S, Wang Y, Zou Y, Nagasaki K, Hosokawa K, Osaka I, Arakawa R, Enomoto K (2008) Isolation and characterization of two groups of novel marine bacteria producing violacein. Mar Biotechnol 10:128–132

    Article  CAS  Google Scholar 

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Acknowledgments

This work was partly supported by a Grant-in-Aid (07F011) for the promotion of academic frontier from the Ministry of Education, Culture, Science, Sports and Technology, Japan.

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Correspondence to Keiichi Enomoto.

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Zhang, X., Enomoto, K. Characterization of a gene cluster and its putative promoter region for violacein biosynthesis in Pseudoalteromonas sp. 520P1. Appl Microbiol Biotechnol 90, 1963–1971 (2011). https://doi.org/10.1007/s00253-011-3203-9

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  • DOI: https://doi.org/10.1007/s00253-011-3203-9

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