Abstract
The objective of this study was to enhance the activity of aniline dioxygenase (AtdA), a multi-component Rieske non-heme iron dioxygenase enzyme isolated from Acinetobacter sp. strain YAA, so as to create an enhanced biocatalyst for the bioremediation of aromatic amines. Previously, the mutation V205A was found to widen the substrate specificity of AtdA to accept 2-isopropylaniline (2IPA) for which the wild-type enzyme has no activity (Ang EL, Obbard JP, Zhao HM, FEBS J, 274:928–939, 2007). Using mutant V205A as the parent and applying one round of saturation mutagenesis followed by a round of random mutagenesis, the activity of the final mutant, 3-R21, was increased by 8.9-, 98.0-, and 2.0-fold for aniline, 2,4-dimethylaniline (24DMA), and 2-isopropylaniline (2IPA), respectively, over the mutant V205A. In particular, the activity of the mutant 3-R21 for 24DMA, which is a carcinogenic aromatic amine pollutant, was increased by 3.5-fold over the wild-type AtdA, while the AN activity was restored to the wild-type level, thus yielding a mutant aniline dioxygenase with enhanced activity and capable of hydroxylating a wider range of aromatic amines than the wild type.
Similar content being viewed by others
References
Ang EL, Obbard JP, Zhao HM (2007) Probing the molecular determinants of aniline dioxygenase substrate specificity by saturation mutagenesis. FEBS J 274:928–939
Beil S, Mason JR, Timmis KN, Pieper DH (1998) Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene. J Bacteriol 180:5520–5528
Bomhard EM, Herbold BA (2005) Genotoxic activities of aniline and its metabolites and their relationship to the carcinogenicity of aniline in the spleen of rats. Crit Rev Toxicol 35:783–835
Bugg TDH, Winfield CJ (1998) Enzymatic cleavage of aromatic rings: mechanistic aspects of the catechol dioxygenases and later enzymes of bacterial oxidative cleavage pathways. Nat Prod Rep 15:513–530
Dong X, Fushinobu S, Fukuda E, Terada T, Nakamura S, Shimizu K, Nojiri H, Omori T, Shoun H, Wakagi T (2005) Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01. J Bacteriol 187:2483–2490
Essington ME (1994) Adsorption of aniline and toluidines on montmorillonite. Soil Sci 158:181–188
Fuenmayor SL, Wild M, Boyes AL, Williams PA (1998) A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J Bacteriol 180:2522–2530
Furusawa Y, Nagarajan V, Tanokura M, Masai E, Fukuda M, Senda T (2004) Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. J Mol Biol 342:1041–1052
Grayson M, Eckroth D, Mark HF, Othmer DF, Overberger CG, Seaborg GT (1984) Kirk-Othmer encyclopedia of chemical technology, vol. 2, 3rd edn. Wiley, New York, pp 309–375
Kauppi B, Lee K, Carredano E, Parales RE, Gibson DT, Eklund H, Ramaswamy S (1998) Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase. Structure 6:571–586
Keenan BG, Leungsakul T, Smets BF, Wood TK (2004) Saturation mutagenesis of Burkholderia cepacia R34 2,4-dinitrotoluene dioxygenase at DntAc valine 350 for synthesizing nitrohydroquinone, methylhydroquinone, and methoxyhydroquinone. Appl Environ Microbiol 70:3222–3231
Keenan BG, Leungsakul T, Smets BF, Mori MA, Henderson DE, Wood TK (2005) Protein engineering of the archetypal nitroarene dioxygenase of Ralstonia sp. strain U2 for activity on aminonitrotoluenes and dinitrotoluenes through alpha-subunit residues leucine 225, phenylalanine 350, and glycine 407. J Bacteriol 187:3302–3310
Kumamaru T, Suenaga H, Mitsuoka M, Watanabe T, Furukawa K (1998) Enhanced degradation of polychlorinated biphenyls by directed evolution of biphenyl dioxygenase. Nat Biotechnol 16:663–666
Liang Q, Takeo M, Chen M, Zhang W, Xu Y, Lin M (2005) Chromosome-encoded gene cluster for the metabolic pathway that converts aniline to TCA-cycle intermediates in Delftia tsuruhatensis AD9. Microbiology 151:3435–3446
Lyons CD, Katz S, Bartha R (1984) Mechanisms and pathways of aniline elimination from aquatic environments. Appl Environ Microbiol 48:491–496
Markowitz SB, Levin K (2004) Continued epidemic of bladder cancer in workers exposed to ortho-toluidine in a chemical factory. J Occup Environ Med 46:154–160
Michaels GB, Lewis DL (1985) Sorption and toxicity of azo and triphenylmethane dyes to aquatic microbial populations. Environ Toxicol Chem 4:45–50
Michaels GB, Lewis DL (1986) Microbial transformation rates of azo and triphenylmethane dyes. Environ Toxicol Chem 5:161–166
Mondello FJ (1989) Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation. J Bacteriol 171:1725–1732
Morley KL, Kazlauskas RJ (2005) Improving enzyme properties: when are closer mutations better? Trends Biotechnol 23:231–237
Murakami S, Hayashi T, Maeda T, Takenaka S, Aoki K (2003) Cloning and functional analysis of aniline dioxygenase gene cluster, from Frateuria species ANA-18, that metabolizes aniline via an ortho-cleavage pathway of catechol. Biosci Biotechnol Biochem 67:2351–2358
Nohmi T, Miyata R, Yoshikawa K, Nakadate M, Ishidate M Jr (1983) Metabolic activation of 2,4-xylidine and its mutagenic metabolite. Biochem Pharmacol 32:735–738
Parales RE, Resnick SM, Yu CL, Boyd DR, Sharma ND, Gibson DT (2000) Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: control by phenylalanine 352 in the alpha subunit. J Bacteriol 182:5495–5504
Przybojewska B (1999) Assessment of aniline derivatives-induced DNA damage in the liver cells of B6C3F1 mice using the alkaline single cell gel electrophoresis (‘comet’) assay. Cancer Lett 147:1–4
Radomski JL (1979) The primary aromatic amines: their biological properties and structure–activity relationships. Annu Rev Pharmacol Toxicol 19:129–157
Rai HS, Bhattacharyya MS, Singh J, Bansal TK, Vats P, Banerjee UC (2005) Removal of dyes from the effluent of textile and dyestuff manufacturing industry: a review of emerging techniques with reference to biological treatment. Crit Rev Environ Sci Technol 35:219–238
Sakamoto T, Joern JM, Arisawa A, Arnold FH (2001) Laboratory evolution of toluene dioxygenase to accept 4-picoline as a substrate. Appl Environ Microbiol 67:3882–3887
Seeger M, Zielinski M, Timmis KN, Hofer B (1999) Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400. Appl Environ Microbiol 65:3614–3621
Shardonofsky S, Krishnan K (1997) Characterization of methemoglobinemia induced by 3,5-xylidine in rats. J Toxicol Environ Health 50:595–604
Takeo M, Fujii T, Maeda Y (1998a) Sequence analysis of the genes encoding a multicomponent dioxygenase involved in oxidation of aniline and o-toluidine in Acinetobacter sp. strain YAA. J Ferment Bioeng 85:17–24
Takeo M, Fujii T, Takenaka K, Maeda Y (1998b) Cloning and sequencing of a gene cluster for the meta-cleavage pathway of aniline degradation in Acinetobacter sp. strain YAA. J Ferment Bioeng 85:514–517
Urata M, Uchida E, Nojiri H, Omori T, Obo R, Miyaura N, Ouchiyama N (2004) Genes involved in aniline degradation by Delftia acidovorans strain 7N and its distribution in the natural environment. Biosci Biotechnol Biochem 68:2457–2465
Wackett LP (2002) Mechanism and applications of Rieske non-heme iron dioxygenases. Enzyme Microbial Technol 31:577–587
Weisburger EK, Russfield AB, Homburger F, Weisburger JH, Boger E, Dongen CGV, Chu KC (1978) Testing of twenty-one environmental aromatic amines or derivatives for long-term toxicity or carcinogenicity. J Environ Pathol Toxicol 2:325–356
Zhao HM (2007) Directed evolution of novel protein functions. Biotechnol Bioeng 98:313–317
Zielinski M, Kahl S, Standfuss-Gabisch C, Camara B, Seeger M, Hofer B (2006) Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity. Appl Environ Microbiol 72:2191–2199
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Ang, E.L., Obbard, J.P. & Zhao, H. Directed evolution of aniline dioxygenase for enhanced bioremediation of aromatic amines. Appl Microbiol Biotechnol 81, 1063–1070 (2009). https://doi.org/10.1007/s00253-008-1710-0
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-008-1710-0