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Directed evolution of aniline dioxygenase for enhanced bioremediation of aromatic amines

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Abstract

The objective of this study was to enhance the activity of aniline dioxygenase (AtdA), a multi-component Rieske non-heme iron dioxygenase enzyme isolated from Acinetobacter sp. strain YAA, so as to create an enhanced biocatalyst for the bioremediation of aromatic amines. Previously, the mutation V205A was found to widen the substrate specificity of AtdA to accept 2-isopropylaniline (2IPA) for which the wild-type enzyme has no activity (Ang EL, Obbard JP, Zhao HM, FEBS J, 274:928–939, 2007). Using mutant V205A as the parent and applying one round of saturation mutagenesis followed by a round of random mutagenesis, the activity of the final mutant, 3-R21, was increased by 8.9-, 98.0-, and 2.0-fold for aniline, 2,4-dimethylaniline (24DMA), and 2-isopropylaniline (2IPA), respectively, over the mutant V205A. In particular, the activity of the mutant 3-R21 for 24DMA, which is a carcinogenic aromatic amine pollutant, was increased by 3.5-fold over the wild-type AtdA, while the AN activity was restored to the wild-type level, thus yielding a mutant aniline dioxygenase with enhanced activity and capable of hydroxylating a wider range of aromatic amines than the wild type.

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References

  • Ang EL, Obbard JP, Zhao HM (2007) Probing the molecular determinants of aniline dioxygenase substrate specificity by saturation mutagenesis. FEBS J 274:928–939

    Article  CAS  Google Scholar 

  • Beil S, Mason JR, Timmis KN, Pieper DH (1998) Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene. J Bacteriol 180:5520–5528

    Article  CAS  Google Scholar 

  • Bomhard EM, Herbold BA (2005) Genotoxic activities of aniline and its metabolites and their relationship to the carcinogenicity of aniline in the spleen of rats. Crit Rev Toxicol 35:783–835

    Article  CAS  Google Scholar 

  • Bugg TDH, Winfield CJ (1998) Enzymatic cleavage of aromatic rings: mechanistic aspects of the catechol dioxygenases and later enzymes of bacterial oxidative cleavage pathways. Nat Prod Rep 15:513–530

    Article  CAS  Google Scholar 

  • Dong X, Fushinobu S, Fukuda E, Terada T, Nakamura S, Shimizu K, Nojiri H, Omori T, Shoun H, Wakagi T (2005) Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01. J Bacteriol 187:2483–2490

    Article  CAS  Google Scholar 

  • Essington ME (1994) Adsorption of aniline and toluidines on montmorillonite. Soil Sci 158:181–188

    Article  CAS  Google Scholar 

  • Fuenmayor SL, Wild M, Boyes AL, Williams PA (1998) A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J Bacteriol 180:2522–2530

    Article  CAS  Google Scholar 

  • Furusawa Y, Nagarajan V, Tanokura M, Masai E, Fukuda M, Senda T (2004) Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. J Mol Biol 342:1041–1052

    Article  CAS  Google Scholar 

  • Grayson M, Eckroth D, Mark HF, Othmer DF, Overberger CG, Seaborg GT (1984) Kirk-Othmer encyclopedia of chemical technology, vol. 2, 3rd edn. Wiley, New York, pp 309–375

    Google Scholar 

  • Kauppi B, Lee K, Carredano E, Parales RE, Gibson DT, Eklund H, Ramaswamy S (1998) Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase. Structure 6:571–586

    Article  CAS  Google Scholar 

  • Keenan BG, Leungsakul T, Smets BF, Wood TK (2004) Saturation mutagenesis of Burkholderia cepacia R34 2,4-dinitrotoluene dioxygenase at DntAc valine 350 for synthesizing nitrohydroquinone, methylhydroquinone, and methoxyhydroquinone. Appl Environ Microbiol 70:3222–3231

    Article  CAS  Google Scholar 

  • Keenan BG, Leungsakul T, Smets BF, Mori MA, Henderson DE, Wood TK (2005) Protein engineering of the archetypal nitroarene dioxygenase of Ralstonia sp. strain U2 for activity on aminonitrotoluenes and dinitrotoluenes through alpha-subunit residues leucine 225, phenylalanine 350, and glycine 407. J Bacteriol 187:3302–3310

    Article  CAS  Google Scholar 

  • Kumamaru T, Suenaga H, Mitsuoka M, Watanabe T, Furukawa K (1998) Enhanced degradation of polychlorinated biphenyls by directed evolution of biphenyl dioxygenase. Nat Biotechnol 16:663–666

    Article  CAS  Google Scholar 

  • Liang Q, Takeo M, Chen M, Zhang W, Xu Y, Lin M (2005) Chromosome-encoded gene cluster for the metabolic pathway that converts aniline to TCA-cycle intermediates in Delftia tsuruhatensis AD9. Microbiology 151:3435–3446

    Article  CAS  Google Scholar 

  • Lyons CD, Katz S, Bartha R (1984) Mechanisms and pathways of aniline elimination from aquatic environments. Appl Environ Microbiol 48:491–496

    Article  CAS  Google Scholar 

  • Markowitz SB, Levin K (2004) Continued epidemic of bladder cancer in workers exposed to ortho-toluidine in a chemical factory. J Occup Environ Med 46:154–160

    Article  CAS  Google Scholar 

  • Michaels GB, Lewis DL (1985) Sorption and toxicity of azo and triphenylmethane dyes to aquatic microbial populations. Environ Toxicol Chem 4:45–50

    Article  CAS  Google Scholar 

  • Michaels GB, Lewis DL (1986) Microbial transformation rates of azo and triphenylmethane dyes. Environ Toxicol Chem 5:161–166

    Article  CAS  Google Scholar 

  • Mondello FJ (1989) Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation. J Bacteriol 171:1725–1732

    Article  CAS  Google Scholar 

  • Morley KL, Kazlauskas RJ (2005) Improving enzyme properties: when are closer mutations better? Trends Biotechnol 23:231–237

    Article  CAS  Google Scholar 

  • Murakami S, Hayashi T, Maeda T, Takenaka S, Aoki K (2003) Cloning and functional analysis of aniline dioxygenase gene cluster, from Frateuria species ANA-18, that metabolizes aniline via an ortho-cleavage pathway of catechol. Biosci Biotechnol Biochem 67:2351–2358

    Article  CAS  Google Scholar 

  • Nohmi T, Miyata R, Yoshikawa K, Nakadate M, Ishidate M Jr (1983) Metabolic activation of 2,4-xylidine and its mutagenic metabolite. Biochem Pharmacol 32:735–738

    Article  CAS  Google Scholar 

  • Parales RE, Resnick SM, Yu CL, Boyd DR, Sharma ND, Gibson DT (2000) Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: control by phenylalanine 352 in the alpha subunit. J Bacteriol 182:5495–5504

    Article  CAS  Google Scholar 

  • Przybojewska B (1999) Assessment of aniline derivatives-induced DNA damage in the liver cells of B6C3F1 mice using the alkaline single cell gel electrophoresis (‘comet’) assay. Cancer Lett 147:1–4

    Article  CAS  Google Scholar 

  • Radomski JL (1979) The primary aromatic amines: their biological properties and structure–activity relationships. Annu Rev Pharmacol Toxicol 19:129–157

    Article  CAS  Google Scholar 

  • Rai HS, Bhattacharyya MS, Singh J, Bansal TK, Vats P, Banerjee UC (2005) Removal of dyes from the effluent of textile and dyestuff manufacturing industry: a review of emerging techniques with reference to biological treatment. Crit Rev Environ Sci Technol 35:219–238

    Article  CAS  Google Scholar 

  • Sakamoto T, Joern JM, Arisawa A, Arnold FH (2001) Laboratory evolution of toluene dioxygenase to accept 4-picoline as a substrate. Appl Environ Microbiol 67:3882–3887

    Article  CAS  Google Scholar 

  • Seeger M, Zielinski M, Timmis KN, Hofer B (1999) Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400. Appl Environ Microbiol 65:3614–3621

    Article  CAS  Google Scholar 

  • Shardonofsky S, Krishnan K (1997) Characterization of methemoglobinemia induced by 3,5-xylidine in rats. J Toxicol Environ Health 50:595–604

    CAS  PubMed  Google Scholar 

  • Takeo M, Fujii T, Maeda Y (1998a) Sequence analysis of the genes encoding a multicomponent dioxygenase involved in oxidation of aniline and o-toluidine in Acinetobacter sp. strain YAA. J Ferment Bioeng 85:17–24

    Article  CAS  Google Scholar 

  • Takeo M, Fujii T, Takenaka K, Maeda Y (1998b) Cloning and sequencing of a gene cluster for the meta-cleavage pathway of aniline degradation in Acinetobacter sp. strain YAA. J Ferment Bioeng 85:514–517

    Article  CAS  Google Scholar 

  • Urata M, Uchida E, Nojiri H, Omori T, Obo R, Miyaura N, Ouchiyama N (2004) Genes involved in aniline degradation by Delftia acidovorans strain 7N and its distribution in the natural environment. Biosci Biotechnol Biochem 68:2457–2465

    Article  CAS  Google Scholar 

  • Wackett LP (2002) Mechanism and applications of Rieske non-heme iron dioxygenases. Enzyme Microbial Technol 31:577–587

    Article  CAS  Google Scholar 

  • Weisburger EK, Russfield AB, Homburger F, Weisburger JH, Boger E, Dongen CGV, Chu KC (1978) Testing of twenty-one environmental aromatic amines or derivatives for long-term toxicity or carcinogenicity. J Environ Pathol Toxicol 2:325–356

    CAS  PubMed  Google Scholar 

  • Zhao HM (2007) Directed evolution of novel protein functions. Biotechnol Bioeng 98:313–317

    Article  CAS  Google Scholar 

  • Zielinski M, Kahl S, Standfuss-Gabisch C, Camara B, Seeger M, Hofer B (2006) Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity. Appl Environ Microbiol 72:2191–2199

    Article  CAS  Google Scholar 

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Correspondence to Huimin Zhao.

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Ang, E.L., Obbard, J.P. & Zhao, H. Directed evolution of aniline dioxygenase for enhanced bioremediation of aromatic amines. Appl Microbiol Biotechnol 81, 1063–1070 (2009). https://doi.org/10.1007/s00253-008-1710-0

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  • DOI: https://doi.org/10.1007/s00253-008-1710-0

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