Skip to main content
Log in

Flaviaesturariibacter flavus sp. nov., isolated from soil in Jeju Island

  • Original Paper
  • Published:
Archives of Microbiology Aims and scope Submit manuscript

Abstract

A Gram-stain-negative, non-motile and yellow-colored bacterium, designated 17J68-12T, was isolated from soil in Jeju Island, Korea. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 17J68-12T formed a distinct lineage within the family Chitinophagaceae and was mostly related to members of Flaviaesturariibacter luteus (97.5%), Flaviaesturariibacter amylovorans (96.8%) and Flaviaesturariibacter terrae (96.8%). Growth was observed at 18–42 °C (optimum 30 °C) in R2A broth at pH 7.0. The major cellular fatty acids of the strain 17J68-12 T were summed feature 3 (C16:1 ω6c and/or C16:1 ω7c), summed feature 1 (C15:1 iso-H and/or C13:0 3-OH), and iso-C15:0. The predominant respiratory quinones are MK-7 and MK-6. The major polar lipid was identified as phosphatidylethanolamine. Based on biochemical, chemotaxonomic and phylogenetic characteristics, the strain 17J68-12T represents a novel bacterial species within the family Chitinophagaceae, for which the name Flaviaesturariibacter flavus sp. nov. is proposed. The type strain of Flaviaesturariibacter flavus is 17J68-12T (= KCTC 62219T = JCM 33179T).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cappuccino JG, Sherman N (2002) Microbiology—a laboratory manual, 6th edn. Pearson Education, Inc. Benjamin Cummings, California

    Google Scholar 

  • Felsenstein J (1985) Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  PubMed  Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Hiraishi A, Ueda Y, Ishihara J, Mori T (1996) Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42:457–469

    Article  CAS  Google Scholar 

  • Kang JY, Chun J, Seo JW, Kim CH, Jahng KY (2015) Flaviaesturariibacter amylovorans gen. nov., sp. nov., a starch-hydrolysing bacterium, isolated from estuarine water. Int J Syst Evol Microbiol 65:2209–2214

    Article  CAS  PubMed  Google Scholar 

  • Kim MK, Im W-T, Ohta H, Lee M, Lee ST (2005) Sphingopyxis granuli sp. nov., a β-glucosidase-producing bacterium in the family Sphingomonadaceae in a-4 subclass of the Proteobacteria. J Microbiol 43:152–157

    CAS  PubMed  Google Scholar 

  • Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Komagata K, Suzuki K (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207

    Article  CAS  Google Scholar 

  • Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241

    Article  CAS  Google Scholar 

  • Okiria J, Lee JJ, Park SJ, Lee YH, Lee SY, Park S, Kim BO, Ten LN, Jung HY (2017) Flaviaesturariibacter terrae sp. nov., isolated from mountain soil. Int J Syst Evol Microbiol 67:2660–2664

    Article  CAS  PubMed  Google Scholar 

  • Pascual J, Foesel BU, Geppert A, HuberOvermann KJJ (2017) Flaviaesturariibacter luteus sp. nov., isolated from an agricultural floodplain soil, and emended description of the genus Flaviaesturariibacter. Int J Syst Evol Microbiol 67:1727–1734

    Article  CAS  PubMed  Google Scholar 

  • Rosselló-Móra R, Trujillo ME, Sutcliffe IC (2017) Introducing a digital protologue: a timely move towards a database-driven systematics of Archaea and Bacteria. Syst Appl Microbiol 40:121–122

    Article  PubMed  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  • Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc, Newark

    Google Scholar 

  • Scherer P, Kneifel H (1983) Distribution of polyamines in methanogenic bacteria. J Bacteriol 154:1315–1322

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Evol Microbiol 44:846–849

    Article  CAS  Google Scholar 

  • Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J (2016) NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44:6614–6624

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882

    Article  Google Scholar 

  • Weisburg WG, Barns SM, Pellerier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Woo KS, Sohn YK, Ahn US, Yoon SH, Spate A (2013) Jeju Island geopark—a volcanic wonder of Korea. Geology of Jeju Island. Springer, Berlin, pp 13–14

    Book  Google Scholar 

  • Yoon MH, Im WT (2007) Flavisolibacter ginsengiterrae gen. nov., sp. nov. and Flavisolibacter ginsengisoli sp. nov., isolated from ginseng cultivating soil. Int J Syst Evol Microbiol 57:1834–1839

    Article  CAS  PubMed  Google Scholar 

  • Zhao Y, Liu Q, Kang MS, Jin F, Yu H, Im WT (2015) Flavisolibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity isolated from soil used for cultivating ginseng. Int J Syst Evol Microbiol 65:4868–4872

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This research was supported by the MISP (Ministry of Science, ICT & Future Planning), Korea, under the National Program for Excellence in SW supervised by the IITP (Institute of Information & communications Technology Planning & Evaluation)” (2016-0-00022) and by a grant from the National Institute of Biological Resources (NIBR), funded by the Ministry of Environment (MOE) of the Republic of Korea (NIBR201801204).

Author information

Authors and Affiliations

Authors

Contributions

All authors equally contributed to this work.

Corresponding authors

Correspondence to Myung Kyum Kim or Gayathri Subramani.

Ethics declarations

Conflict of interest

All authors certify that there is no conflict of interest with any financial organization regarding the material discussed in the manuscript.

Additional information

Communicated by Erko Stackebrandt.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

TaxoNumber and draft genome accession number The Digital Protologue database TaxoNumber for strain 17J68-12T is TA00801. The draft genome sequence of strain 17J68-12T was deposited at DDBJ/EMBL/GenBank under the accession number SJZI01000000.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary file1 (DOCX 4440 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Jang, J.H., Maeng, S.H., Jung, H.Y. et al. Flaviaesturariibacter flavus sp. nov., isolated from soil in Jeju Island. Arch Microbiol 202, 2663–2669 (2020). https://doi.org/10.1007/s00203-020-01963-3

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00203-020-01963-3

Keywords

Navigation