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Identification of a suppressor for the wheat stripe rust resistance gene Yr81 in Chinese wheat landrace Dahongpao

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Abstract

Key message

Combined with BSE-Seq analysis and multiple genetic populations, three genes involved in stripe rust resistance were identified in Chinese wheat landrace Dahongpao, including a novel suppressor on 2BS.

Abstract

Dahongpao (DHP), a landrace of hexaploid wheat in China, exhibits a high degree of stripe rust resistance in the field for many years. In this study, bulked segregant analysis coupled with exome capture sequencing (BSE-Seq) was used to identify genes encoding stripe rust resistance in multiple genetic populations from the cross between DHP and a susceptible hexaploid Australian cultivar, Avocet S (AvS). The most effective QTL in DHP was Yr18, explaining up to 53.08% of phenotypic variance in the F2:3 families. To identify additional genes, secondary mapping populations SP1 and SP2 were produced by crossing AvS with two resistant lines derived from F2:3 families lacking Yr18. An all-stage resistance gene, Yr.DHP-6AS, was identified via BSE-Seq analysis of SP1. Combined the recombinant plants from both SP1 and SP2, Yr.DHP-6AS was located between KP6A_1.66 and KP6A_8.18, corresponding to the same region as Yr81. In addition, secondary mapping populations SP3 and SP4 were developed by selfing a segregating line from F2:3 families lacking Yr18. A novel suppressor gene on chromosome 2BS was identified from DHP for effectively suppressing the resistance of Yr.DHP-6AS in the SP3 and SP4. As a result, the wheat lines carrying both Yr18 and Yr.DHP-6AS show higher level of stripe rust resistance than DHP, providing an effective and simple combination for developing new wheat cultivars with ASR and APR genes. Further, the newly developed KASP markers, KP6A_1.99 and KP6A_5.22, will facilitate the application of Yr.DHP-6AS in wheat breeding via marker-assisted selection.

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Availability of data and material

The datasets supporting the conclusions of this study are included in this published article and its supplementary information files. Sequence data have been submitted to National Genomics Data Center (NGDS) under Bioproject no. PRJCA011980. All the materials, including the resistant Chinese wheat landrace "Dahongpao" (DHP), used in this study are deposited at Triticeae Research Institute, Sichuan Agricultural University.

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Acknowledgements

The authors are grateful to Prof. Qiu-Zhen Jia (Plant Protection Research Institute, Gansu Academy of Agricultural Sciences, Lanzhou, P. R. China) for providing the stripe rust races, and Prof. Li-Hui Li and Xiu-Quan Li (Chinese Academy of Agricultural Sciences) for providing plant materials.

Funding

We acknowledge financial support from financial support from the Major Program of National Agricultural Science and Technology of China (Grant Number NK20220607), the National Natural Science Foundation of China (Grant Number 32272059) and the Science and Technology Department of Sichuan Province (Grant Numbers 2022ZDZX0014, 2021YFYZ0002 and 2021YJ0297).

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  1. Huiling Jin, Haipeng Zhang and Xuyang Zhao contributed equally to this paper.

Authors and Affiliations

  1. State Key Laboratory of Crop Gene Exploitation and Utilization in Southwest China, Wenjiang, Chengdu, Sichuan, 611130, People’s Republic of China

    Huiling Jin, Hao Li, Yazhou Zhang, Qiang Xu, Qiantao Jiang, Yuming Wei, Jian Ma, Pengfei Qi, Mei Deng, Houyang Kang, Youliang Zheng, Guoyue Chen & Yunfeng Jiang

  2. Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, 611130, People’s Republic of China

    Huiling Jin, Haipeng Zhang, Xuyang Zhao, Li Long, Fangnian Guan, Yunpeng Wang, Linyu Huang, Xiaoyue Zhang, Yuqi Wang, Hao Li, Yazhou Zhang, Qiang Xu, Qiantao Jiang, Yuming Wei, Jian Ma, Pengfei Qi, Mei Deng, Houyang Kang, Youliang Zheng & Guoyue Chen

  3. College of Agronomy, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, 611130, People’s Republic of China

    Wei Li & Zhien Pu

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Contributions

HLJ carried out the experiment, analyzed the data, and drafted the manuscript; HPZ and XYZ carried out the experiment and analyzed the data; LL, FNG, YPW, LYH, XYZ, YQW and HL carried out the phenotypic evaluation; WL, QTJ, YMW, JM, PFQ, MD, HYK and YLZ participated in the field experiment; GYC and YFJ designed and carried out the experiment, formulated the questions, analyzed the data and revised the manuscript. All authors have reviewed and approved the final manuscript.

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Correspondence to Guoyue Chen or Yunfeng Jiang.

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Jin, H., Zhang, H., Zhao, X. et al. Identification of a suppressor for the wheat stripe rust resistance gene Yr81 in Chinese wheat landrace Dahongpao. Theor Appl Genet 136, 67 (2023). https://doi.org/10.1007/s00122-023-04347-5

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