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Genetic architecture of factors underlying partial resistance to Alternaria leaf blight in carrot

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Abstract

In most production areas, Alternaria leaf blight (ALB) is recognized as the most common and destructive foliage disease in carrot. To assess the genetic architecture of carrot ALB resistance, two parental coupling maps were developed with similar number of dominant markers (around 70), sizes (around 650 cM), densities (around 9.5 cM), and marker composition. The F2:3 progenies were evaluated in field and tunnel for two scoring dates. The continuous distribution of the disease severity value indicated that ALB resistance is under polygenic control. Three QTLs regions were found on three linkage groups. Two of them were tunnel or field specific and were detected only at the second screening date suggesting that the expression of these two QTLs regions involved in resistance to Alternaria dauci might depend on environment and delay after infection.

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References

  • Arseniuk E, Czembor PC, Czaplicki A, Song QJ, Cregan PB, Hoffman DL, Ueng PP (2004) QTL controlling partial resistance to Stagonospora nodorum leaf blotch in winter wheat cultivar Alba. Euphytica 137:225–231

    Article  CAS  Google Scholar 

  • Asins MJ (2002) Present and future of quantitative trait locus analysis in plant breeding. Plant Breed 121:281–291

    Article  Google Scholar 

  • Basten CJ, Weir BS, Zeng ZB (2000) QTL cartographer. A reference manual and tutorial for QTL mapping.. Department of Statistics, North Carolina State University, Raleigh

    Google Scholar 

  • Ben-Noon E, Shtienberg D, Shlevin E, Vintal H, Dinoor A (2001) Optimization of chemical suppression of Alternaria dauci, the causal agent of Alternaria leaf blight in carrots. Plant Dis 85:1149–1156

    Article  CAS  Google Scholar 

  • Ben-Noon E, Shtienberg D, Shlevin E, Dinoor A (2003) Joint action of disease control measures: a case study of Alternaria leaf blight of carrot. Phytopathol 93:1320–1328

    Article  CAS  Google Scholar 

  • Bert PF, Charmet G, Sourdille P, Hayward MD, Balfourier F (1999) A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers. Theor Appl Genet 99:445–452

    Article  CAS  Google Scholar 

  • Boiteux LS, Della Vecchia PT, Reifschneider FJ (1993) Heritability estimate for resistance to Alternaria dauci in carrot. Plant Breed 110:165–167

    Article  Google Scholar 

  • Briard M, Le Clerc V, Grzebelus D, Senalik D, Simon PW (2000) Modified protocols for rapid carrot genomic DNA extraction and AFLPTM analysis using silver stain or radioisotopes. Plant Mol Biol Rep 18:235–241

    Article  CAS  Google Scholar 

  • Calenge F, Faure A, Goerre M, Gebhardt C, Van de Weg WE, Parisi L, Durel CE (2004) Quantitative trait loci (QTL) analysis reveals both broad-spectrum and isolate-specific QTL for scab resistance in an apple progeny challenged with eight isolates of Venturia inaequalis. Phytopathol 94:370–379

    Article  CAS  Google Scholar 

  • Chen XM, Line RF, Leung H (1998) Genome scanning for resistance gene analogs in rice, barley and wheat by high-resolution electrophoresis. Theor Appl Genet 97:345–355

    Article  CAS  Google Scholar 

  • Chen H, Wang SP, Xing YZ, Xu CG, Hayes PM, Zhang QF (2003) Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley. Proc Natl Acad Sci USA 100:2544–2549

    Article  PubMed  CAS  Google Scholar 

  • Corbaz R, Perko J (1995) Observation sur le degré de sensibilité à l’alternariose du feuillage (Alternaria dauci) des variétés de carottes de garde. Revue suisse de Vitic Arboric Hortic 27:311–312

    Google Scholar 

  • de Vicente MC, Tanksley SD (1993) QTL analysis of transgressive segregation in an interspecific tomato cross. Genetics 134:585–596

    Google Scholar 

  • Farrar JJ, Pryor BA, Davis RM (2004) Alternaria diseases of carrot. Plant Dis 88:776–784

    Article  Google Scholar 

  • Flandez-Galvez H, Ades PK, Ford R, Pang EC, Taylor PW (2003) QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.). Theor Appl Genet 107:1257–1265

    Article  PubMed  CAS  Google Scholar 

  • Foolad MR, Zhang LP, Khan AA, Nino-Liu D, Lin GY (2002) Identification of QTLs for early blight (Alternaria solani) resistance in tomato using backcross populations of a Lycopersicon esculentum × L. hirsutum cross. Theor Appl Genet 104:945–958

    Article  PubMed  CAS  Google Scholar 

  • Gallais A (1990) Théorie de la sélection en amélioration des plantes. Masson, Paris, pp 47–106

  • Gaube C, Dubourg C, Pawelec A, Chamont S, Blancard D, Briard M (2004) Alternaria dauci sous surveillance. PHM Le maraîcher 454:15–18

  • SAS Institute Inc (1991) SAS user’s guide: release 8.1 eds. SAS Institute, Cary

  • Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW (2007) Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping. Theor Appl Genet 114:693–704

    Article  PubMed  CAS  Google Scholar 

  • Knapp SJ, Holloway JL, Bridges WC, Liu BH (1995) Mapping dominant markers using F2 matings. Theor Appl Genet 91:74–81

    Article  Google Scholar 

  • Kosambi DD (1944) The estimation of map distances from recombination values. Annals of Eugen 12:172–175

    Google Scholar 

  • Kover PX, Caicedo AL (2001) The genetic architecture of disease resistance in plants and the maintenance of recombination by parasites. Mol Ecol 10:1–16

    Article  PubMed  CAS  Google Scholar 

  • Lander E, Botstein D (1989) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185–199

    PubMed  CAS  Google Scholar 

  • Lander E, Green P, Abrahamson J, Barlow A, Daly M, Lincoln S, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181

    Article  PubMed  CAS  Google Scholar 

  • Le Clerc V, Suel A, Briard M (2005) Identification of duplicates for the optimization of carrot collection management. Biodiv Conserv 14:1211–1223

    Article  Google Scholar 

  • Marsan PA, Gorni C, Chitto A, Redaelli R, van Vijk R, Stam P, Motto M (2001) Identification of QTLs for grain yield and grain-related traits of maize (Zea mays L.) using an AFLP map, different testers, and cofactor analysis. Theor Appl Genet 102:230–243

    Article  CAS  Google Scholar 

  • Mather K (1936) Types of linkage data and their value. Annals of Eugen 7:251–264

    Google Scholar 

  • Mester DI, Ronin YI, Hu Y, Peng J, Nevo E, Korol AB (2003) Efficient multipoint mapping: making use of dominant repulsion-phase markers. Theor Appl Genet 107:1102–1112

    Article  PubMed  CAS  Google Scholar 

  • Pawelec A, Dubourg C, Briard M (2006) Evaluation of carrot resistance to Alternaria leaf blight in controlled environments. Plant Pathol 55:68–72

    Article  Google Scholar 

  • Pilet ML, Delourme R, Foisset N, Renard M (1998) Identification of QTL involved in field resistance to light leaf spot (Pyrenopeziza brassicae) and blackleg resistance (Leptosphaeria maculans) in winter rapeseed (Brassica napus L.). Theor Appl Genet 97:398–406

    Article  CAS  Google Scholar 

  • Pryor BM, Strandberg JO, Davis RM, Nunez JJ, Gilbertson RL (2002) Survival and persistence of Alternaria dauci in carrot cropping systems. Plant Dis 86:1115–1122

    Article  Google Scholar 

  • Qi X, Niks R-E, Stam P, Lindhout P (1998) Identification of QTLs for partial resistance to leaf rust (Puccinia hordei) in barley. Theor Appl Genet 96:1205–1215

    Article  CAS  Google Scholar 

  • Rogers PM, Stevenson WR (2006) Weather-based fungicide spray programs for control of two foliar diseases on carrot cultivars differing in susceptibility. Plant Dis 90:358–364

    Article  CAS  Google Scholar 

  • Roman B, Torres AM, Rubiales D, Cubero JI, Satovic Z (2002) Mapping of quantitative trait loci controlling broomrape (Orobanche crenata Forsk.) resistance in faba bean (Vicia faba L.). Genome 45:1057–1063

    Article  PubMed  CAS  Google Scholar 

  • Santos C, Simon P (2002) QTL analyses reveal clustered loci for accumulation of major provitamin A carotenes and lycopene in carrot roots. Mol Genet Genomics 268:122–129

    Article  PubMed  CAS  Google Scholar 

  • Simon PW, Strandberg JO (1998) Diallel analysis of resistance in carrot to Alternaria leaf blight. J Am Soc Hortic Sci 123:412–415

    Google Scholar 

  • Soller M, Brody T, Genizi G (1976) On the power of experimental designs for the detection of linkage between marker loci and quantitative loci in crosses between inbred lines. Theor Appl Genet 47:37–39

    Article  Google Scholar 

  • Soylu S, Kurt S, Soylu EM, Tok FM (2005) First report of Alternaria leaf blight caused by Alternaria dauci on carrot in Turkey. Plant Pathol 54:252

    Article  Google Scholar 

  • Villeneuve F, Bossis M, Breton D, Brunel E, Diare N, Rouxel F (2001) La carotte en France. Principaux ennemis de la culture et programmes de recherches en cours. Phytoma 536:35–39

    Google Scholar 

  • Vivek BS, Simon PW (1999) Linkage relationships among molecular markers and storage root traits of carrot (Daucus carota L. ssp. sativus). Theor Appl Genet 99:58–64

    Article  CAS  Google Scholar 

  • Welz HG, Schechert AW, Geiger HH (1999) Dynamic gene action at QTLs for resistance to Setosphaeria turcica in maize. Theor Appl Genet 98:1036–1045

    Article  CAS  Google Scholar 

  • Young ND (1996) QTL mapping and quantitative disease resistance in plants. Ann. Rev. Phytopathol 34:479–501

    Article  CAS  Google Scholar 

  • Zeng ZB (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972–10976

    Article  PubMed  CAS  Google Scholar 

  • Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457–1468

    PubMed  CAS  Google Scholar 

  • Zhao JW, Meng JL (2003) Genetic analysis of loci associated with partial resistance to Sclerotinia sclerotiorum in rapeseed (Brassica napus L.). Theor Appl Genet 106:759–764

    PubMed  Google Scholar 

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Acknowledgments

The authors thank Dr. C.-E. Durel (INRA, UMR Genhort 1259, Angers, France) for help with analyses using the software QTL cartographer and D. Manley for English corrections. This study was supported by grants from the Communauté d’Agglomération de Communes d’Angers and Vilmorin SA, France. Information concerning the use markers can be requested from the Agrocampus Ouest through V. Le Clerc.

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Correspondence to Valérie Le Clerc.

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Communicated by L. Xiong.

V. Le Clerc, A. Pawelec and C. Birolleau-Touchard contributed equally to this paper.

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Le Clerc, V., Pawelec, A., Birolleau-Touchard, C. et al. Genetic architecture of factors underlying partial resistance to Alternaria leaf blight in carrot. Theor Appl Genet 118, 1251–1259 (2009). https://doi.org/10.1007/s00122-009-0978-5

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  • DOI: https://doi.org/10.1007/s00122-009-0978-5

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