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Globulins are the main seed storage proteins in Brachypodium distachyon

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Abstract

Brachypodium distachyon is being developed as a model system to study temperate cereals and forage grasses. We have begun to investigate its utility to understand seed development and grain filling by identifying the major seed storage proteins in a diploid accession Bd21. With the use of ID SDS–PAGE and mass spectrometry we detected seven major storage protein bands, six of which were identified as globulins. A subset of the major seed proteins isolated from three hexaploid accessions, Bd4, Bd14 and Bd17 were also identified as globulins. Several Brachypodium cDNAs clones encoding globulin were completely sequenced. Two types of globulin genes were identified, Bd.glo1 and Bd.glo2, which are similar to maize 7S and oat 12S globulins, respectively. The derived polypeptide sequences of the globulins contain a typical signal peptide sequence in their polypeptide N-termini and two cupin domains. Bd.glo1 is encoded by a single copy gene, whereas, Bd.glo2 belongs to a gene family.

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References

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    PubMed  CAS  Google Scholar 

  • Belanger FC, Kriz AL (1989) Molecular characterization of the major maize embryo globulin encoded by the Glb1 gene. Plant Physiol 91:746–750

    Google Scholar 

  • Bendtsen JD, Nielsen H, von Heijne G, Brunak S (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340:783–795

    Article  PubMed  CAS  Google Scholar 

  • Bennett MD, Leitch IJ (2005) Nuclear DNA amounts in angiosperms: Progress, problems and prospects. Ann Bot 95:45

    Article  PubMed  CAS  Google Scholar 

  • Brinegar AC, Peterson DM (1982) Separation and characterization of oat globulin polypeptides. Arch Biochem Biophys 219:71–79

    Article  PubMed  CAS  Google Scholar 

  • Catalan P, Shi Y, Armstrong L, Draper J, Stace CA (1995) Molecular phylogeny of the grass genus Brachypodium P.Beuav. based on RFLP and RAPD analysis. Bot J Linn Soc 117:263

    Article  Google Scholar 

  • Chesnut RS, Shotwell MA, Boyer SK, Larkins BA (1989) Analysis of avenin proteins and the expression of their mRNAs in developing oat seeds. Plant Cell 1:913–924

    Article  PubMed  CAS  Google Scholar 

  • Christiansen P, Andersen CH, Didion T, Folling M, Nielsen KK (2005) A rapid and efficient transformation protocol for the grass Brachypodium distachyon. Plant Cell Rep 23:751–758

    Article  PubMed  CAS  Google Scholar 

  • Craig R, Beavis RC (2004) TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20:1466–1467

    Article  PubMed  CAS  Google Scholar 

  • Draper J, Mur LA, Jenkins G, Ghosh-Biswas GC, Bablak P, Hasterok R, Routledge AP (2001) Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol 127:1539–1555

    Article  PubMed  CAS  Google Scholar 

  • Dunwell JM (1998) Cupins: a new superfamily of functionally diverse proteins that include germins and plant storage proteins. Biotechnol Genet Eng Rev 15:1–32

    PubMed  CAS  Google Scholar 

  • Dunwell JM, Khuri S, Gane PJ (2000) Microbial relatives of the seed storage proteins of higher plants: conservation of structure and diversification of function during evolution of the cupin superfamily. Microbiol Mol Biol Rev 64:153–179

    Article  PubMed  CAS  Google Scholar 

  • Dunwell JM, Culham A, Carter CE, Sosa-Aguirre CR, Goodenough PW (2001) Evolution of functional diversity in the cupin superfamily. Trends Biochem Sci 26:740–746

    Article  PubMed  CAS  Google Scholar 

  • Dunwell JM, Purvis A, Khuri S (2004) Cupins: the most functionally diverse protein superfamily? Phytochemistry 65:7–17

    Article  PubMed  CAS  Google Scholar 

  • Fenyo D, Beavis RC (2003) A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal Chem 75:768–774

    Article  PubMed  CAS  Google Scholar 

  • Hasterok R, Draper J, Jenkins G (2004) Laying the cytotaxonomic foundations of a new model grass, Brachypodium distachyon (L.) Beauv. Chromosome Res 12:397–403

    Article  PubMed  CAS  Google Scholar 

  • Hasterok R, Marasek A, Donnison IS, Armstead I, Thomas A, King IP, Wolny E, Idziak D, Draper J, Jenkins G (2006) Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using BAC landing with fluorescent in situ hybridization. Genetics 173(1):349–362

    Article  PubMed  CAS  Google Scholar 

  • von Heijne G (1986) A new method for predicting signal sequence cleavage sites. Nucleic Acids Res 14:4863–4690

    Article  Google Scholar 

  • Higuchi W, Fukazawa C (1987) A rice glutelin and a soybean glycinin have evolved from a common ancestral gene. Gene 55:245–253

    Article  PubMed  CAS  Google Scholar 

  • Hilton H, Gaut BS (1998) Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene. Genetics 150:863–872

    PubMed  CAS  Google Scholar 

  • Jung R, Scott MP, Nam YW, Beaman TW, Bassuner R, Saalbach I, Muntz K, Nielsen NC (1998) The role of proteolysis in the processing and assembly of 11S seed globulins. Plant Cell 10:343–357

    Article  PubMed  CAS  Google Scholar 

  • Kasarda DD, Woodard KM, Adalsteins AE (1998) Resolution of high molecular weight glutenin subunits by a new SDS–PAGE system incorporating a neutral pH buffer. Cereal Chem 75:70–71

    Article  CAS  Google Scholar 

  • Kellogg EA (2001) Evolutionary history of the grasses. Plant Physiol 125:1198–1205

    Article  PubMed  CAS  Google Scholar 

  • Khuri S, Bakker FT, Dunwell JM (2001) Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins. Mol Biol Evol 18:593–605

    PubMed  CAS  Google Scholar 

  • Kriz AL, Schwartz D (1986) Synthesis of globulins in maize embryos. Plant Physiol 82:1065–1075

    Google Scholar 

  • Lane BG, Bernier F, Dratewka-Kos E, Shafai R, Kennedy TD, Pyne C, Munro JR, Vaughan T, Walters D, Altomare F (1991) Homologies between members of the germin family inhexaploid wheat and similarities between these wheat germins and certain Physarum spherulins. J Biol Chem 266:10461–10469

    PubMed  CAS  Google Scholar 

  • Marchler-Bauer A, Bryant SH (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32:327–331

    Article  CAS  Google Scholar 

  • Okita TW, Hwang YS, Hnilo J, Kim WT, Aryan AP, Larson R, Krishnan HB (1989) Structure and expression of the rice glutelin multigene family. J Biol Chem 264:12573–12581

    PubMed  CAS  Google Scholar 

  • Schwartz D (1979) Analysis of the size alleles of the Pro gene in maize: evidence for a mutant protein processor. Mol Gen Genet 174:233–240

    Article  CAS  Google Scholar 

  • Vensel WH, Tanaka CK, Cai N, Wong JH, Buchanan BB, Hurkman WJ (2005) Developmental changes in the metabolic protein profiles of wheat endosperm. Proteomics 5:1594–1611

    Article  PubMed  CAS  Google Scholar 

  • Vogel JP, Garvin DF, Leong OM, Hayden DM (2006a) Agrobacterium-mediated transformation and inbred line development in the model grass Brachypodium distachyon. Plant Cell Tissue Organ Cult 84:199

    Article  Google Scholar 

  • Vogel JP, Gu YQ, Twigg P, Lazo GR, Laudencia-Chingcuanco D, Hayden DM, Donze TJ, Vivian LA, Stamova B, Coleman-Derr D (2006b) EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon. Theor Appl Genet 113:186–195

    Article  PubMed  CAS  Google Scholar 

  • Walburg G, Larkins BA (1983) Oat seed globulin: subunit characterization and demonstration of its synthesis as a precursor. Plant Physiol 72:161–165

    Article  PubMed  CAS  Google Scholar 

  • Yamagata H, Sugimoto T, Tanaka K, Kasai Z (1982) Biosynthesis of storage proteins in developing rice seeds. Plant Physiol 70:1094–1100

    PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We would like to thank Tiffany Chui and Xiaoyang Liu and Dr. Naxin Huo, for excellent technical assistance. The authors would also like to thank Drs. Grace Chen and Michael Gitt, and Gerard Lazo for the critical reading of the manuscript. Specific product name mentioned in this article does not constitute an endorsement and does not imply a recommendation over other suitable products. The USDA-ARS CRIS Project 5325-21000-011 funded this work.

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Correspondence to Debbie L. Laudencia-Chingcuanco.

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Communicated by J. W. Snape.

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Laudencia-Chingcuanco, D.L., Vensel, W.H. Globulins are the main seed storage proteins in Brachypodium distachyon . Theor Appl Genet 117, 555–563 (2008). https://doi.org/10.1007/s00122-008-0799-y

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