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Biochemical characterization of a bifunctional chitinase/lysozyme from Streptomyces sampsonii suitable for N-acetyl chitobiose production

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Abstract

Objectives

Chitinases play important role in chitin bioconversion, while few of them have been put into use due to their poor properties. We aimed to identify and characterize chitinases suitable for N-acetyl chitooligosaccharides (COSs) production from chitin materials.

Results

A chitinase gene (SsChi28) from Streptomyces sampsonii XY2-7 was cloned and heterologously expressed in E. coli BL21 (DE3) as an active protein. The deduced protein shared high sequence identities and structure similarities with some glycoside hydrolase family 19 chitinases. The recombinant enzyme (SsChi28) was purified and biochemically characterized. SsChi28 was a monomeric protein with a molecular mass of 30 kDa estimated by SDS-PAGE. It was most active at pH 6.0 and 55 °C, respectively, and stable in a wide pH range of 3.5–11.5 and up to 60 °C. The enzyme exhibited strict substrate specificities towards ethylene glycol chitin (222.3 U/mg) and colloidal chitin (20.1 U/mg). Besides, it displayed lysozyme activity against Micrococcus lysodeikticus. SsChi28 hydrolyzed colloidal chitin to yield mainly N-acetyl chitobiose, accounting high up to 73% (w/w) in total products.

Conclusion

The excellent enzymatic properties of SsChi28 may make it potential in chitin bioconversion (especially for N-acetyl COS production), as well as in biological control of fungal diseases.

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References

  • Brzezinska MS, Jankiewicz U, Kalwasinska A, Swiatczak J, Zero K (2019) Characterization of chitinase from Streptomyces luridiscabiei U05 and its antagonist potential against fungal plant pathogens. J Phytopathol 167:404–412

    Article  Google Scholar 

  • Deng JJ, Shi D, Mao HH, Li ZW, Liang S, Ke Y, Luo XC (2019) Heterologous expression and characterization of an antifungal chitinase (Chit46) from Trichoderma harzianum GIM 3.442 and its application in colloidal chitin conversion. Int J Biol Macromol 134:113–121

    Article  CAS  Google Scholar 

  • Gao L, Sun J, Secundo F, Gao X, Xue C, Mao X (2018) Cloning, characterization and substrate degradation mode of a novel chitinase from Streptomyces albolongus ATCC 27414. Food Chem 261:329–336

    Article  CAS  Google Scholar 

  • Ghasemi S, Ahmadian G, Sadeghi M et al (2011) First report of a bifunctional chitinase/lysozyme produced by Bacillus pumilus SG2. Enzym Microb Technol 48:225–231

    Article  CAS  Google Scholar 

  • Graça I, Liang J, Guilherme M et al (2016) Cloning, overexpression and functional characterization of a class III chitinase from Casuarina glauca nodules. Symbiosis 70:139–148

    Article  Google Scholar 

  • Hoell IA, Klemsdal SS, Vaaje-Kolstad G, Horn SJ, Eijsink VGH (2005) Overexpression and characterization of a novel chitinase from Trichoderma atroviride strain P1. BBA-Proteins Proteom 1748:180–190

    Article  CAS  Google Scholar 

  • Honda S, Wakita S, Sugahara Y, Kawakita M, Oyama F, Sakaguchi M (2016) Characterization of two Listeria innocua chitinases of different sizes that were expressed in Escherichia coli. Appl Microbiol Biotechnol 100:8031–8041

    Article  CAS  Google Scholar 

  • Kavitha A, Vijayalakshmi M (2011) Partial purification and antifungal profile of chitinase produced by Streptomyces tendae TK-VL_333. Ann Microbiol 61:597–603

    Article  CAS  Google Scholar 

  • Kezuka Y, Ohishi M, Itoh Y, Watanabe J, Mitsutomi M, Watanabe T, Nonaka T (2006) Structural studies of a two-domain chitinase from Streptomyces griseus HUT6037. J Mol Biol 358:472–484

    Article  CAS  Google Scholar 

  • Le B, Yang SH (2018) Characterization of a chitinase from Salinivibrio sp. BAO-1801 as an antifungal activity and a biocatalyst for producing chitobiose. J Basic Microbiol 58:848–856

    Article  CAS  Google Scholar 

  • Lee YS, Park IH, Yoo JS et al (2007) Cloning, purification, and characterization of chitinase from Bacillus sp. DAU101. Bioresour Technol 98:2734–2741

    Article  CAS  Google Scholar 

  • Li S, Zhang B, Zhu H, Zhu T (2018) Cloning and expression of the chitinase encoded by ChiKJ406136 from Streptomyces sampsonii (Millard & Burr) Waksman KJ40 and its antifungal effect. Forests. https://doi.org/10.3390/f9110699

    Article  Google Scholar 

  • Li C, Li X, Bai C, Zhang Y, Wang Z (2019) A chitinase with antifungal activity from naked oat (Avena chinensis) seeds. J Food Biochem. https://doi.org/10.1111/jfbc.12713

    Article  PubMed  Google Scholar 

  • Liu Y, Yan Q, Yang S, Jiang Z (2015) Novel protease-resistant exochitinase (Echi47) from pig fecal environment DNA with application potentials in the food and feed industries. J Agric Food Chem 63:6262–6270

    Article  CAS  Google Scholar 

  • Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the folin phenol reagent. J Biol Chem 193:265–275

    CAS  Google Scholar 

  • Mander P, Cho SS, Choi YH, Panthi S, Choi YS, Kim HM, Yoo JC (2016) Purification and characterization of chitinase showing antifungal and biodegradation properties obtained from Streptomyces anulatus CS242. Arch Pharm Res 39:878–886

    Article  CAS  Google Scholar 

  • Martin MN (1991) The latex of Hevea brasiliensis contains high levels of both chitinases and chitinases/lysozymes. Plant Physiol 95:469–476

    Article  CAS  Google Scholar 

  • Menghiu G, Ostafe V, Prodanovic R, Fischer R, Ostafe R (2019) Biochemical characterization of chitinase A from Bacillus licheniformis DSM8785 expressed in Pichia pastoris KM71H. Protein Expr Purif 154:25–32

    Article  CAS  Google Scholar 

  • Metraux JP, Burkhart W, Moyer M et al (1989) Isolation of a complementary-DNA encoding a chitinase with structural homology to a bifunctional lysozyme chitinase. Proc Natl Acad Sci USA 86:896–900

    Article  CAS  Google Scholar 

  • Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31:426–428

    Article  CAS  Google Scholar 

  • Monzingo AF, Marcotte EM, Hart PJ, Robertas JD (1996) Chitinases, chitosanases, and lysozymes can be divided into procaryotic and eucaryotic families sharing a conserved core. Nat Struct Biol 3:133–140

    Article  CAS  Google Scholar 

  • Mukherjee G, Sen SK (2006) Purification, characterization, and antifungal activity of chitinase from Streptomyces venezuelae P10. Curr Microbiol 53:265–269

    Article  CAS  Google Scholar 

  • Muzzarelli RAA, Boudrant J, Meyer D, Manno N, DeMarchis M, Paoletti MG (2012) Current views on fungal chitin/chitosan, human chitinases, food preservation, glucans, pectins and inulin: a tribute to Henri Braconnot, precursor of the carbohydrate polymers science, on the chitin bicentennial. Carbohydr Polym 87:995–1012

    Article  CAS  Google Scholar 

  • Ohno T, Armand S, Hata T, Nikaidou N, Henrissat B, Mitsutomi M, Watanabe T (1996) A modular family 19 chitinase found in the prokaryotic organism Streptomyces griseus HUT 6037. J Bacteriol 178:5065–5070

    Article  CAS  Google Scholar 

  • Oyeleye A, Normi YM (2018) Chitinase: diversity, limitations, and trends in engineering for suitable applications. Biosci Rep. https://doi.org/10.1042/BSR20180323

    Article  PubMed  PubMed Central  Google Scholar 

  • Patel AK, Singh VK, Yadav RP, Moir AJ, Jagannadham MV (2009) ICChI, a glycosylated chitinase from the latex of Ipomoea carnea. Phytochemistry 70:1210–1216

    Article  CAS  Google Scholar 

  • Patel AK, Singh VK, Yadav RP, Moir AJ, Jagannadham MV (2010) Purification and characterization of a new chitinase from latex of Ipomoea carnea. Process Biochem 45:675–681

    Article  CAS  Google Scholar 

  • Purushotham P, Sarma PV, Podile AR (2012) Multiple chitinases of an endophytic Serratia proteamaculans 568 generate chitin oligomers. Bioresour Technol 112:261–269

    Article  CAS  Google Scholar 

  • Rahman MA, Choi YH, Pradeep GC, Yoo JC (2014) An ammonium sulfate sensitive chitinase from Streptomyces sp. CS501. Arch Pharm Res 37:1522–1529

    Article  CAS  Google Scholar 

  • Singh A, Kirubakaran SI, Sakthivel N (2007) Heterologous expression of new antifungal chitinase from wheat. Protein Expr Purif 56:100–109

    Article  CAS  Google Scholar 

  • Songsiriritthigul C, Lapboonrueng S, Pechsrichuang P, Pesatcha P, Yamabhai M (2010) Expression and characterization of Bacillus licheniformis chitinase (ChiA), suitable for bioconversion of chitin waste. Bioresour Technol 101:4096–4103

    Article  CAS  Google Scholar 

  • Toro TB, Nguyen TP, Watt TJ (2015) An improved 96-well turbidity assay for T4 lysozyme activity. MethodsX 2:256–262

    Article  Google Scholar 

  • Tran TN, Doan CT, Nguyen VB, Nguyen AD, Wang SL (2018) The isolation of chitinase from Streptomyces thermocarboxydus and its application in the preparation of chitin oligomers. Res Chem Intermediat 45:727–742

    Article  Google Scholar 

  • Udaya Prakash NA, Jayanthi M, Sabarinathan R, Kangueane P, Mathew L, Sekar K (2010) Evolution, homology conservation, and identification of unique sequence signatures in GH19 family chitinases. J Mol Evol 70:466–478

    Article  CAS  Google Scholar 

  • Ueda M, Shimosaka M, Arai R (2015) Expression, purification, crystallization and X-ray diffraction analysis of ChiL, a chitinase from Chitiniphilus shinanonensis. Acta Crystallogr F Struct Biol Commun 71:1516–1520

    Article  CAS  Google Scholar 

  • Ueda M, Shioyama T, Nakadoi K, Nakazawa M, Sakamoto T, Iwamoto T, Sakaguchi M (2017) Cloning and expression of a chitinase gene from Eisenia fetida. Int J Biol Macromol 104:1648–1655.

    Article  CAS  Google Scholar 

  • Wan AC, Tai BC (2013) CHITIN–a promising biomaterial for tissue engineering and stem cell technologies. Biotechnol Adv 31:1776–1785

    Article  CAS  Google Scholar 

  • Wang SL, Chang WT (1997) Purification and characterization of two bifunctional chitinases/lysozymes extracellularly produced by Pseudomonas aeruginosa K-187 in a shrimp and crab shell powder medium. Appl Environ Microbiol 63:380–386

    Article  CAS  Google Scholar 

  • Wu X, Wang J, Shi YQ, Chen S, Yan QJ, Jiang ZQ, Jing H (2017) N-acetyl-chitobiose ameliorates metabolism dysfunction through Erk/p38 MAPK and histone H3 phosphorylation in type 2 diabetes mice. J Funct Foods 28:96–105

    Article  CAS  Google Scholar 

  • Yahiaoui M, Laribi-Habchi H, Bouacem K et al (2019) Purification and biochemical characterization of a new organic solvent-tolerant chitinase from Paenibacillus timonensis strain LK-DZ15 isolated from the Djurdjura Mountains in Kabylia Algeria. Carbohydr Res. https://doi.org/10.1016/j.carres.2019.107747

    Article  PubMed  Google Scholar 

  • Yan Q, Fong SS (2018) Cloning and characterization of a chitinase from Thermobifida fusca reveals Tfu_0580 as a thermostable and acidic endochitinase. Biotechnol Rep (Amst). https://doi.org/10.1016/j.btre.2018.e00274

    Article  Google Scholar 

  • Yang S, Fu X, Yan Q, Guo Y, Liu Z, Jiang Z (2016a) Cloning, expression, purification and application of a novel chitinase from a thermophilic marine bacterium Paenibacillus barengoltzii. Food Chem 192:1041–1048

    Article  CAS  Google Scholar 

  • Yang S, Fu X, Yan Q, Jiang Z, Wang J (2016b) Biochemical Characterization of a novel acidic exochitinase from Rhizomucor miehei with antifungal activity. J Agric Food Chem 64:461–469

    Article  CAS  Google Scholar 

  • Zhang A, He Y, Wei G, Zhou J, Dong W, Chen K, Ouyang P (2018) Molecular characterization of a novel chitinase CmChi1 from Chitinolyticbacter meiyuanensis SYBC-H1 and its use in N-acetyl-d-glucosamine production. Biotechnol Biofuels. https://doi.org/10.1186/s13068-018-1169-x

    Article  PubMed  PubMed Central  Google Scholar 

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Acknowledgements

This work was supported in part by the National Natural Science Foundation of China (No. 21576283) and National Natural Science Fund for Distinguished Young Scholars (No. 31822037).

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Correspondence to Shaoqing Yang.

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Zhang, W., Liu, Y., Ma, J. et al. Biochemical characterization of a bifunctional chitinase/lysozyme from Streptomyces sampsonii suitable for N-acetyl chitobiose production. Biotechnol Lett 42, 1489–1499 (2020). https://doi.org/10.1007/s10529-020-02834-z

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