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Preliminary investigation of QTLs associated with seedling resistance to ascochyta blight from Cicer echinospermum, a wild relative of chickpea

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Abstract.

Accessions from Cicer echinospermum, a wild relative of chickpea (Cicer arietinum L.), contain resistance to the fungal disease ascochyta blight, a devastating disease of chickpea. A linkage map was constructed based on an interspecific F2 population, derived from a cross between a susceptible chickpea cultivar (Lasseter) and a resistant C. echinospermum accession (PI 527930). The linkage map incorporated 83 molecular markers, that included RAPD, ISSR, STMS and RGA markers; eight markers remained unlinked. The map comprised eight linkage groups and covered a map distance of 570 cM. Six out of the eight linkage groups were correlated to linkage groups from the integrated Cicer map using STMS markers. Quantitative trait loci (QTLs) associated with ascochyta blight resistance were detected using interval mapping and single-point analysis. The F2 population was evaluated for seedling and stem resistance in glasshouse trials. At least two QTLs were identified for seedling resistance, both of which were located within linkage group 4. Five markers were associated with stem resistance, four of which were also associated with seedling resistance. QTLs from previous studies also mapped to LG 4, suggesting that this linkage group is an important region of the Cicer genome for resistance to ascochyta blight.

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References

  • Baker B, Zambryski P, Staskawicz B, Dinesh-Kumar SP (1997) Signalling in plant-microbe interactions. Science 276:726–733

    CAS  PubMed  Google Scholar 

  • Chen XM, Line RF, Leung H (1998) Genome scanning for resistance-gene analogs in rice, barley and wheat by high-resolution electrophoresis. Theor Appl Genet 97:345–355

    Article  CAS  Google Scholar 

  • Choumanne W, Winter P, Weigand F, Kahl G (2000) Conservation and variability of sequence-tagged microsatellite sites (STMSs) from chickpea (Cicer arietinum L.) within the genus Cicer. Theor Appl Genet 101:269–278

    Article  Google Scholar 

  • Collard BCY, Ades PK, Pang ECK, Brouwer JB, Taylor PWJ (2001) Prospecting for sources of resistance to ascochyta blight in wild Cicer species. Aust Plant Pathol 30:271–276

    Article  Google Scholar 

  • Collard BCY, Pang ECK, Brouwer JB, Taylor PWJ (2002) Use of stem cuttings to generate populations for QTL mapping in chickpea. Int Chickpea Pigeonpea Newslett 9:30–32

    Google Scholar 

  • Collard BCY, Pang ECK, Taylor PWJ (2003) Selection of wild Cicer accessions for the generation of mapping populations segregating for resistance to ascochyta blight. Euphytica 130:1–9

  • Darvasi A, Weinreb A, Minke V, Weller JI, Soller M (1993) Detecting marker-QTL linkage and estimating QTL gene effect and map location using a saturated genetic map. Genetics 134:943–951

    CAS  PubMed  Google Scholar 

  • Dey SK, Singh G (1993) Resistance to ascochyta blight in chickpea – genetic basis. Euphytica 68:147–153

    Google Scholar 

  • Flandez-Galvez H, Ades PK, Ford R, Pang ECK, Taylor PWJ (2003) QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.). Theor Appl Genet (in press)

  • Haley CS, Andersson L (1997) Linkage mapping of quantitative trait loci in plants and animals. In: Dear PH (ed) Genome mapping – a practical approach. Oxford University Press, New York, pp 49–71

  • Hartl DL, Jones EW (1998) Genetics – principles and analysis. Jones and Bartlett Publishers, Sudbury, Massachusetts, pp 54–72

  • Huttel B, Winter P, Weising K, Choumane W, Weigand F, Kahl G (1999) Sequence-tagged microsatellite site markers for chickpea (Cicer arietinum L.). Genome 42:210–217

    PubMed  Google Scholar 

  • Kanazin V, Marek LF, Shoemaker RC (1996) Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci USA 93:11,746–11,750

    Article  Google Scholar 

  • Ladizinsky G, Adler A (1976) The origin of chickpea (Cicer arietinum L.). Euphytica 25:211–217

  • Lincoln SE, Daly MJ, Lander ES (1993a) Constructing genetic linkage maps with MAPMAKER/EXP. Whitehead Institute for Biomedical Research Technical Report, 3rd Edition

  • Lincoln SE, Daly MJ, Lander ES (1993b) Mapping genes controlling quantitative traits using MAPMAKER/QTL. Version 1.1. Whitehead Institute for Biomedical Research Technical Report, 2nd Edition

  • Liu BH (1998) Statistical genomics: linkage, mapping and QTL analysis. CRC Press, Boca Raton Florida, pp 493–517

    Google Scholar 

  • Lorieux M, Goffinet B, Perrier X, Gonzalez de Leon D, Lanaud C (1995) Maximum-likelihood models for mapping genetic markers showing segregation distortion. 2. F2 populations. Theor Appl Genet 90:73–80

    Google Scholar 

  • Michelmore R (1995) Molecular approaches to manipulation of disease resistance genes. Annu Rev Phytopathol 15:393–427

    Article  Google Scholar 

  • Mohan M, Nai S, Bhagwat A, Krishna TG, Yano M, Bhatia CR, Sasaki T (1997) Genome mapping, molecular markers and marker-assisted selection in crop plants. Mol Breed 3:87–103

    CAS  Google Scholar 

  • Nene YL (1982) A review of ascochyta blight of chickpea. Trop Pest Management 28:61–70

    Google Scholar 

  • Paterson AH (1996) Mapping genes responsible for differences in phenotype. In: Paterson AH (ed) Genome mapping in plants. RG Landes Company, Austin Texas, pp 41–54

  • Pundir RPS, Mengesha MH (1995) Cross compatibility between chickpea and its wild relative, Cicer echinospermum Davis. Euphytica 83:241–245

    Google Scholar 

  • Ratnaparkhe MB, Santra DK, Tullu A, Muehlbauer FJ (1998) Inheritance of inter-simple sequence repeat polymorphism and linkage with the fusarium wilt resistance gene in chickpea. Theor Appl Genet 96:348–353

    Article  CAS  Google Scholar 

  • Reddy MV, Singh KB (1984) Evaluation of a world collection of chickpea germplasm accessions for resistance to ascochyta blight. Plant Dis 68:900–901

    Google Scholar 

  • Riahi H, Harrabi MM, Halila MH, Strange RN (1990) A quantitative scale for assessing chickpea reaction to Ascochyta rabiei. Can J Bot 68:2736–2738

    Google Scholar 

  • Santra DK, Tekeoglu M, Ratnaparkhe M, Kaiser WJ, Muehlbauer FJ (2000) Identification and mapping of QTLs conferring resistance to ascochyta blight in chickpea. Crop Sci 40:1606–1612

    CAS  Google Scholar 

  • Shen KA, Meyers BC, Islam-Faridi MF, Chin DB, Stelly DM, Michelmore RW (1998) Resistance gene candidates identified by PCR with the degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Mol Plant-Microbe Interact 11:815–823

  • Simon CJ, Muehlbauer FJ (1997) Construction of a chickpea linkage map and its comparison with maps of pea and lentil. J Hered 88:115–119

    CAS  Google Scholar 

  • Singh KB, Hawtin GC, Nene YL, Reddy MV (1981) Resistance in chickpeas to Ascochyta rabiei. Plant Dis 65:586–587

    Google Scholar 

  • Singh KB, Ocampo B (1993) Interspecific hybridization in annual Cicer species. J Genet Breed 47:199–204

    Google Scholar 

  • Singh KB, Ocampo B (1997) Exploitation of wild Cicer species for yield improvement in chickpea. Theor Appl Genet 95:418–423

    Google Scholar 

  • Singh KB, Malhotra RS, Halila H, Knights EJ, Verma MM (1994) Current status and future strategy in breeding chickpea for resistance to biotic and abiotic stresses. Euphytica 73:137–149

    Google Scholar 

  • Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205–233

    CAS  PubMed  Google Scholar 

  • Taylor PWJ, Fraser TA, Ko HL, Henry RJ (1995) RAPD analysis of sugarcane during tissue culture. In: Terzi RCM, Falavigna A (eds) Current issues in plant molecular and cellular biology. Kluwer Academic, Dordrecht Boston London, pp 241–246

  • Tekeoglu M, Santra DK, Kaiser WJ, Muehlbauer FJ (2000) Ascochyta blight resistance inheritance in three chickpea recombinant inbred-line populations. Crop Sci 40:1251–1256

    Google Scholar 

  • Tekeoglu M, Rajesh PN, Muehlbauer FJ (2002) Integration of sequence tagged microsatellites to the chickpea genetic map. Theor Appl Genet 105:847–854

  • Tsujimoto H, Tsunewaki K (1985) Gametocidal genes in wheat and its relatives. II. Suppressor of the chromosome 3C gametocidal gene of Aegilops truncialis. Can J Genet Cytol 27:178–185

    Google Scholar 

  • Tsujimoto H, Tsunewaki K (1988) Gametocidal genes in wheat and its relatives. III. Chromosome location and effects of two Aegilops speltoides-derived gametocidal genes in common wheat. Genome 30:239–244

    Google Scholar 

  • Udupa SM, Baum M (2002) Genetic dissection of pathotype-specific resistance to ascochyta blight disease in chickpea (Cicer arietinum L.) using microsatellite markers. Theor Appl Genet (online Dec 2002) http://link.springer.de/link/service/journals/00122/contents/02/01168/paper/s00122-002-1168

  • Winter P, Pfaff T, Udupa SM, Huttel B, Sharma PC, Sahi S, Arreguin-Espinoza R, Weigand F, Muehlbauer FJ, Kahl G (1999) Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome. Mol Gen Genet 262:90–101

    CAS  PubMed  Google Scholar 

  • Winter P, Benko-Iseppon A-M, Huttel B, Ratnaparkhe M, Tullu A, Sonnante G, Pfaff T, Tekeoglu M, Santra D, Sant VJ, Rajesh PN, Kahl G, Muelbauer FJ (2000) A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum × C. reticulatum cross: localization of resistance genes for Fusarium races 4 and 5. Theor Appl Genet 101:1155–1163

    CAS  Google Scholar 

  • Xu Y, Zhu L, Xiao J, Huang N, McCouch SR (1997) Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, double-haploid and recombinant inbred populations in rice (Oryza sativa L). Mol Gen Genet 253:535–545

    Article  CAS  PubMed  Google Scholar 

  • Young ND (1996) QTL mapping and quantitative disease resistance in plants. Annu Rev Phytopathol 34:479–501

    CAS  Google Scholar 

  • Young ND (1999) A cautiously optimistic vision for marker-assisted breeding. Mol Breed 5:505–510

    Article  Google Scholar 

Download references

Acknowledgements.

B.C.Y. Collard was supported by an Australian Postgraduate Award, with the industry support of the Department of Natural Resources and Environment. We thank H. Flandez-Galvez for valuable discussion regarding the identification of QTLs associated with ascochyta blight resistance from an intraspecific chickpea population.

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Correspondence to B. C. Y. Collard.

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Communicated by P. Langridge

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Collard, B.C.Y., Pang, E.C.K., Ades, P.K. et al. Preliminary investigation of QTLs associated with seedling resistance to ascochyta blight from Cicer echinospermum, a wild relative of chickpea. Theor Appl Genet 107, 719–729 (2003). https://doi.org/10.1007/s00122-003-1297-x

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