Skip to main content
Log in

Translational attenuation of ermC: A deletion analysis

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

ermC is a plasmid gene which specifies resistance to macrolide-lincosamide-streptogramin B antibiotics. The product of ermC was previously shown to be an inducible rRNA methylase, which is regulated translationally, and a mechanism for this regulation, termed the translational attenuation model, has been proposed. This model postulates that alternative inactive and active conformational states of the ermC mRNA are modulated by erythromycin-induced ribosome-stalling during translation of a leader peptide. In the present study the translational attenuation model was tested by constructing a series of deletants missing the ermC promoter and portions of the regulatory (leader) region. In these mutants, ermC transcription is dependent on fusion to an upstream promoter. Depending on the terminus of each deletion within the regulatory region, determined by DNA sequencing, ermC expression is observed to be either high level and inducible (like the wildtype), high level and noninducible, or low level and noninducible. The translational attenuation model predicts that as the deletions extend deeper into the leader region, successively masking and unmasking sequences required for translation of the methylase, an alternation of high and low level methylase expression will be observed. These predictions are confirmed. Based on this and other information, the model is refined and extended, and both direct translational activation and kinetic trapping of a metastable active intermediate during transcription are proposed to explain basal synthesis of methylase and to rationalize the effects of certain regulatory mutants.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Alwine JC, Kemp DJ, Stark GR (1977) Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. Proc Natl Acad Sci USA 74:5350–5354

    Google Scholar 

  • Barnes WM (1978) DNA sequence from the histidine operon control region: seven histidine codons in a row. Proc Natl Acad Sci USA 75:4281–4285

    Google Scholar 

  • Bonner WM, Laskey RA (1974) A film detection method for tritium-labelled proteins and nucleic acids in polyacrylamide gels. Eur J Biochem 46:83–88

    Google Scholar 

  • Borer PN, Dengler B, Tinoco I Jr, Uhlenbeck OC (1974) Stability of ribonucleic acid double-stranded helices. J Mol Biol 86:843–853

    Google Scholar 

  • Carmichael GG, McMaster GK (1980) The analysis of nucleic acids in gels using glyoxal and acridine orange. Methods Enzymol 65:380–391

    Google Scholar 

  • Cerná J, Jonák J, Rychlík I (1971) Effect of macrolide antibiotics on the ribosomal peptidyl transferase in cell-free systems derived from Escherichia coli B and erythromycin-resistant mutant of Escherichia coli B. Biochim Biophys Acta 240:109–121

    Google Scholar 

  • Cerná J, Rychlík I, Pulkrábek P (1969) The effect of antibiotics on the coded binding of peptidyl-tRNA to the ribosome and on the transfer of the peptidyl residue to puromycin. Eur J Biochem 9:27–35

    Google Scholar 

  • Contente S, Dubnau D (1979) Characterization of plasmid transformation in Bacillus subtilis: Kinetic properties and the effect of DNA conformation. Mol Gen Genet 167:251–258

    Google Scholar 

  • Dennis PP, Fiil NP (1979) Transcriptional and post-transcriptional control of RNA polymerase and ribosomal protein genes cloned on composite ColEl plasmids in the bacterium Escherichia coli. J Biol Chem 254:7540–7547

    Google Scholar 

  • Di Nocera PP, Blasi F, Di Lauro R, Frunzio R, Bruni CB (1978) Nucleotide sequence of the attenuator region of the histidine operon of Escherichia coli K-12. Proc Natl Acad Sci USA 75:4276–4280

    Google Scholar 

  • Dubnau D, Davidoff-Abelson R, Scher B, Cirigliano C (1973) Fate of transforming deoxyribonucleic acid after uptake by competent Bacillus subtilis; Phenotypic characterization of radiationsensitive recombination-deficient mutants. J Bacteriol 114:273–286

    Google Scholar 

  • Dubnau D, Grandi G, Grandi R, Gryczan TJ, Hahn J, Kozloff Y, Shivakumar AG (1981) Regulation of plasmid specified MLS-resistance in Bacillus subtilis by conformational alteration of RNA structure. In: Levy SB, Clowes RC, Koenig EL (eds) Molecular biology, pathogenicity, and ecology of bacterial plasmids. Plenum Publishing Corp, New York, pp 157–167

    Google Scholar 

  • Ehrlich SD (1977) Replication and expression of plasmids from Staphylococcus aureus and Bacillus subtilis. Proc Natl Acad Sci USA 74:1680–1682

    Google Scholar 

  • Fallon AM, Jinks CS, Strycharz GD, Nomura M (1979) Regulation of ribosomal protein synthesis in Escherichia coli by selective mRNA inactivation. Proc Natl Acad Sci USA 76:3411–3415

    Google Scholar 

  • Fiil NP, Friesen JD, Downing WL, Dennis PP (1980) Postranscriptional regulatory mutants in a ribosomal protein-RNA polymerase operon of E. coli. Cell 19:837–844

    Google Scholar 

  • Gardner JF (1979) Regulation of the threonine operon: Tandem threonine and isoleucine codons in the control region and translational control of transcription termination. Proc Natl Acad Sci USA 76:1706–1710

    Google Scholar 

  • Gemmill RM, Wessler SR, Keller EB, Calvo JM (1979) leu operon of Salmonella typhimurium is controlled by an attenuation mechanism. Proc Natl Acad Sci USA 76:4941–4945

    Google Scholar 

  • Gryczan TJ, Contente S, Dubnau D (1978) Characterization of Staphylococcus aureus plasmids introduced by transformation into Bacillus subtilis. J Bacteriol 134:318–329

    Google Scholar 

  • Gryczan TJ, Dubnau D (1978) Construction and properties of chimeric plasmids in Bacillus subtilis. Proc Natl Acad Sci USA 75:1428–1432

    Google Scholar 

  • Gryczan TJ, Grandi G, Hahn J, Grandi R, Dubnau D (1980) Conformational alteration of mRNA structure and the post-transcriptional regulation of erythromycin-induced drug resistance. Nucl Acids Res 8: 6081–6097

    Google Scholar 

  • Guerry P, LeBlanc DJ, Falkow S (1973) General method for the isolation of plasmid deoxyribonucleic acid. J Bacteriol 116:1064–1066

    Google Scholar 

  • Horinouchi S, Weisblum B (1980) Posttranscriptional modification of mRNA conformation: mechanism that regulates erythromycin-induced resistance. Proc Natl Acad Sci USA 77:7079–7083

    Google Scholar 

  • Horinouchi S, Weisblum B (1981) The control region for erythromycin resistance: Free energy changes related to induction and mutation to constitutive expression. Mol Gen Genet 182:341–348

    Google Scholar 

  • Iordanescu S (1976) Three distinct plasmids originating in the same Staphylococcus aureus strain. Arch Roum Path Exp Microbiol 35:111–118

    Google Scholar 

  • Jay E, Seth AK, Jay G (1980) Specific binding of a chemically synthesized prokaryotic ribosome recognition site. J Biol Chem 255:3809–3812

    Google Scholar 

  • Kajitani M, Fukuda R, Ishihama A (1980) Autogenous and post-transcriptional regulation of Escherichia coli RNA polymerase synthesis in vitro. Mol Gen Genet 179:489–496

    Google Scholar 

  • Karam JD, Bowles MG (1974) Mutation to overproduction of bacteriophage T4 gene products. J Virol 13:428–438

    Google Scholar 

  • Karam J, Gold L, Singer BS, Dawson M (1981) Translational regulation: Identification of the site on bacteriophage T4 rIIB mRNA recognized by the regA gene function. Proc Natl Acad Sci USA 78:4669–4673

    Google Scholar 

  • Kubota K, Okuyama A, Tanaka N (1972) Differential effects of antibiotics on peptidyl transferase reactions. Biochem Biophys Res Commun 47:1196–1202

    Google Scholar 

  • Lai C-J, Weisblum B, Fahnestock SR, Nomura M (1973) Alteration of 23 S ribosomal RNA and erythromycin-induced resistance to lincomycin and spiramycin in Staphylococcus aureus. J Mol Biol 74:67–72

    Google Scholar 

  • Lemaire G, Gold L, Yarus M (1978) Autogenous translational repression of bacteriophage T4 gene 32 expression in vitro. J Mol Biol 126:73–90

    Google Scholar 

  • McLaughlin JR, Murray CL, Rabinowitz JC (1981) Unique features of the gram-positive Staphylococcus aureus β-lactamase gene. J Biol Chem 256:11283–11291

    Google Scholar 

  • Manor H, Goodman D, Stent GS (1969) RNA chain growth rates in Escherichia coli. J Mol Biol 39:1–29

    Google Scholar 

  • Mao JC-H, Robishaw EE (1971) Effects of macrolides on peptidebond formation and translocation. Biochemistry 10:2054–2061

    Google Scholar 

  • Mao JC-H, Robishaw EE (1972) Erythromycin, a peptidyltransferase effector. Biochemistry 11:4864–4872

    Google Scholar 

  • Maxam AM, Gilbert W (1980) Sequencing end-labeled DNA with base-specific chemical cleavages. Methods in Enzymol 65:499–560

    Google Scholar 

  • Min Jou W, Haegeman G, Ysebaert M, Fiers W (1972) Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein. Nature 237:82–88

    Google Scholar 

  • Miura A, Krueger JH, Itoh S, deBoer HA, Nomura M (1981) Growth-rate-dependent regulation of ribosome synthesis in E. coli: Expression of the lacZ and galK genes fused to ribosomal promoters. Cell 25:773–782

    Google Scholar 

  • Pestka S (1972) Studies on transfer ribonucleic acid-ribosome complexes. XIX. Effect of antibiotics on peptidyl puromycin synthesis on polyribosomes from Escherichia coli. J Biol Chem 247:4669–4678

    Google Scholar 

  • Pestka S (1974) Antibiotics as probes of ribosome structure: Binding of chloramphenicol and erythromycin to polyribosomes; effect of other antibiotics. Antimicrob Ag Chemother 5:255–267

    Google Scholar 

  • Pörschke D (1974) Thermodynamic and kinetic parameters of an oligonucleotide hairpin helix. Biophys Chem 1:381–386

    Google Scholar 

  • Pörschke D, Eigen M (1971) Co-operative non-enzymic base recognition. III. Kinetics of the helix-coil transition of the oligoribouridylic — oligoriboadenylic acid system and of oligoriboadenylic acid alone at acidic pH. J Mol Biol 62:361–381

    Google Scholar 

  • Pörschke D, Uhlenbeck OC, Martin FH (1973) Thermodynamics and kinetics of the helix-coil transition of oligomers containing GC base pairs. Biopolymers 12:1313–1335

    Google Scholar 

  • Reeve JN, Mendelson NH, Coyne SI, Hallock LL, Cole RM (1973) Minicells of Bacillus subtilis. J Bacteriol 114:860–873

    Google Scholar 

  • Rigby PWJ, Dieckmann M, Rhodes C, Berg P (1977) Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol 113:237–251

    Google Scholar 

  • Sanger F, Coulson AR (1978) The use of thin acrylamide gels for DNA sequencing. FEBS Lett 87:107–110

    Google Scholar 

  • Sauerbier W, Hercules K (1973) Control of gene function in bacteriophage T4. IV. Post-transcriptional shutoff of expression of early genes. J Virol 12:538–547

    Google Scholar 

  • Shine J, Dalgarno L (1974) The 3′-terminal sequence of Escherichia coli 16 S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci USA 71:1342–1346

    Google Scholar 

  • Shivakumar AG, Dubnau D (1981) Characterization of a plasmidspecified ribosome methylase associated with macrolide resistance. Nucl Acids Res 9:2549–2562

    Google Scholar 

  • Shivakumar AG, Gryczan TJ, Kozlov YI, Dubnau D (1980a) Organization of the pE194 genome. Mol Gen Genet 179:241–252

    Google Scholar 

  • Shivakumar AG, Hahn J, Dubnau D (1979) Studies on the synthesis of plasmid-coded proteins and their control in Bacillus subtilis minicells. Plasmid 2:279–289

    Google Scholar 

  • Shivakumar AG, Hahn J, Grandi G, Kozlov Y, Dubnau D (1980b) Postranscriptional regulation of an erythromycin resistance protein specified by plasmid pE194. Proc Natl Acad Sci USA 77:3903–3907

    Google Scholar 

  • Steitz JA (1979) Genetic signals and nucleotide sequences in messenger RNA. In: Goldberger RF (ed) Biological regulation and development, vol 1, Gene expression. Plenum Publishing Corp, New York, pp 349–399

    Google Scholar 

  • Tai P-C, Wallace BJ, Davis BD (1974) Selective action of erythromycin on initiating ribosomes. Biochemistry 13:4653–4659

    Google Scholar 

  • Tanaka K, Teraoka H, Tamaki M (1971) Peptidyl puromycin synthesis: Effect of several antibiotics which act on 50 S ribosomal subunits. FEBS Lett 13:65–67

    Google Scholar 

  • Tanaka T, Weisblum B (1975) Construction of a colicin E1-R factor composite plasmid in vitro: means for amplification of deoxyribonucleic acid. J Bacteriol 121:354–362

    Google Scholar 

  • Tinoco I Jr, Borer PN, Dengler B, Levine MD, Uhlenbeck OC, Crothers DM, Gralla J (1973) Improved estimation of secondary structure in ribonucleic acids. Nature New Biol 246:40–41

    Google Scholar 

  • Trimble RB, Maley F (1976) Level of specific prereplicative mRNA's during bacteriophage T4 regA , 43 and T4 43 infection of Escherichia coli B. J Virol 17:538–549

    Google Scholar 

  • Weisblum B, Graham MY, Gryczan T, Dubnau D (1979) Plasmid copy number control: Isolation and characterization of highcopy-number mutants of plasmid pE194. J Bacteriol 137:635–643

    Google Scholar 

  • Zurawski G, Brown K, Killingly D, Yanofsky C (1978a) Nucleotide sequence of the leader region of the phenylalanine operon of Escherichia coli. Proc Natl Acad Sci USA 75:4271–4275

    Google Scholar 

  • Zurawski G, Elseviers D, Stauffer GV, Yanofsky C (1978b) Translational control of transcription termination at the attenuator of the Escherichia coli tryptophan operon Proc Natl Acad Sci USA 75:5988–5992

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by E. Bautz

In partial fulfillment of the requirements for the doctoral degree for J.H., in the Department of Microbiology, New York University School of Medicine

Rights and permissions

Reprints and permissions

About this article

Cite this article

Hahn, J., Grandi, G., Gryczan, T.J. et al. Translational attenuation of ermC: A deletion analysis. Mol Gen Genet 186, 204–216 (1982). https://doi.org/10.1007/BF00331851

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00331851

Keywords

Navigation