Skip to main content
Log in

The complete mitochondrial DNA sequence of the crustacean Artemia franciscana

  • Published:
Journal of Molecular Evolution Aims and scope Submit manuscript

Abstract

The complete mitochondrial DNA (mtDNA) sequence of the brine shrimp Artemia franciscana has been determined. It extends the present knowledge of mitochondrial genomes to the crustacean class and supplies molecular markers for future comparative studies in this large branch of the arthropod phylum. Artemia mtDNA is 15,822 nucleotides long, and when compared with its Drosophila counterpart, it shows very few gene rearrangements, merely affecting two tRNAs placed 3′ downstream of the ND 2 gene. In this position a stem-loop secondary structure with characteristics similar to the vertebrate mtDNA L-strand origin of replication is found. This suggests that, associated with tRNA changes, the diversification of the mitochondrial genome from an ancestor common to crustacea and insects could be explained by errors in the mtDNA replication process. Although the gene content is the same as in most animal mtDNAs, the sizes of the protein coding genes are in some cases considerably smaller. Artemia mtDNA uses the same genetic code as found in insects, ATN and GTG are used as initiation codons, and several genes end in incomplete T or TA codons.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Anderson S, Bankier AT, Barrell BG, de Bruijn MHL, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457–465

    Google Scholar 

  • Anderson S, de Bruijn MHL, Coulson AR, Eperon IC, Sanger F, Young IG (1982) Complete sequence of bovine mitochondrial DNA: Conserved features of the mammalian mitochondrial genome. J Mol Biol 156:683–717

    Google Scholar 

  • Ámason Ú, Gullberg A, Widegren B (1991) The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus. J Mol Evol 33:556–568

    Google Scholar 

  • Ámason Ú, Gullberg A (1993) Comparison between the complete mtDNA sequences of the blue and the fin whale, two species that can hybridize in Nature. J Mol Evol 37:312–322

    Google Scholar 

  • Ámason Ú, Gullberg A, Johnsson E, Ledje C (1993) The nucleotide sequence of the mitochondrial DNA molecule of the grey seal, Halichoerus grypus, and a comparison with mitochondrial sequences of other true seals. J Mol Evol 37:323–330

    Google Scholar 

  • Árnason Ú, Johnsson E (1992) The complete mitochondrial DNA sequence of the harbor seal, Phoca vitulina. J Mol Evol 34:493–505

    Google Scholar 

  • Ballard JWO, Olsen GJ, Faith DP, Odgers WA, Rowell DM, Atkinson PW (1992) Evidence from 125 ribosomal RNA sequences that onycophorans are modified arthropods. Science 258:1345–1348

    Google Scholar 

  • Bankier AT, Weston K, Barrell BG (1987) Random cloning and sequencing by the M13/dideoxynucleotide chain termination method. In: Wu R (ed) Methods of enzymology, vol 155. Academic Press, pp 51–93

  • Batuecas B, Garesse R, Calleja M, Valverde JR, Marco R (1988) Genome organization of Artemia mitochondrial DNA. Nucleic Acids Res 16:6515–6529

    Google Scholar 

  • Bibb MJ, Van Etten RA, Wright CT, Walberg MW, Clayton DA (1981) Sequence and gene organization of mouse mitochondrial DNA. Cell 26:167–180

    Google Scholar 

  • Browne RA, Bowen ST (1991) Taxonomy and population genetics of Artemia. In: Browne R, Sorgeloos P, Trotman NA (eds) Artemia biology. CRC Press, Boca Raton, FL, pp 221–235

    Google Scholar 

  • Cantatore P, Roberti M, Rainaldi G, Gadaleta MN, Saccone C (1989) The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of Paracentrotus lividus. J Biol Chem 264:10965–10975

    Google Scholar 

  • Christianson TW, Clayton DA (1986) In vitro transcription of human mitochondrial DNA: accurate termination requires a region of DNA sequence that can function bidirectionally Proc Natl Acad Sci USA 83:6277–6281

    Google Scholar 

  • Clary DO, Wolstenholme DR (1985) The mitochondria molecule of Drosophila yakuba: nucleotide sequence, gene organization and genetic code. J Mol Evol 22:252–271

    Google Scholar 

  • Clary DO, Wolstenholme DR (1987) Drosophila mitochondria DNA: conserved sequences in the A+T-rich region and supporting evidence for a secondary structure model of the small ribosomal RNA. J Mol Evol 25:116–125

    Google Scholar 

  • Clayton DA (1991) Replication and transcription of vertebrate mitochondrial DNA. Annu Rev Cell Biol 7:453–478

    Google Scholar 

  • Crozier RH, Crozier YC (1993) The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. Genetics 133:97–117

    Google Scholar 

  • de Bruijn MHL (1983) Drosophila melanogaster mitochondrial DNA: novel organization and genetic code. Nature 304:234–241

    Google Scholar 

  • Desjardins P, Morais R (1990) Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J Mol Biol 212:599–634

    Google Scholar 

  • Eliott DJ, Jacobs HT (1989) Mutually exclusive synthetic pathways for sea urchin mitochondrial rRNA and mRNA. Mol Cell Biol 9:1069–1082

    Google Scholar 

  • Felsenstein J (1989) PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164–166

    Google Scholar 

  • Gadaleta G, Pepe G, Decandia G, Quagliariello C, Sbisa E, Saccone C (1989) The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: cryptic signals revealed by comparative analysis between vertebrates. J Mol Evol 28:497–516

    Google Scholar 

  • Garesse R (1988) Drosophila melanogaster mitochondrial DNA: gene organization and evolutionary considerations. Genetics 118:649–663

    Google Scholar 

  • Goddard JM, Wolstenholme DR (1978) Origin and direction of replication in mitochondrial DNA molecules from Drosophila melanogaster. Proc Natl Acad Sci USA 75:3886–3890

    Google Scholar 

  • Gutell RR, Gray MG, Schnare MN (1993) A compilation of large subunit (23S and 235-like) ribosomal RNA structures: 1993. Nucleic Acids Res 21:3055–3074

    Google Scholar 

  • Higgins DG, Sharp PM (1989) Fast and sensitive multiple sequence alignments on a microcomputer. Comput Appl Biosi 5:151–153

    Google Scholar 

  • Hoffman RJ, Boore JL, Brown WM (1992) A novel mitochondrial genome organization from the blue mussel Mytilus edulis. Genetics 131:397–412

    Google Scholar 

  • Holmes DS, Quigley M (1981) A rapid boiling method for the preparation of bacterial plasmids. Anal Biochem 114:193–197

    Google Scholar 

  • Jacobs HT, Elliott DJ, Math VB, Farquharson A (1988) Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. J Mol Biol 202:185–217

    Google Scholar 

  • Kruse B, Narasimhan N, Attardi G (1989) Termination of transcription in human mitochondria: identification and purification of a DNA binding protein factor that promotes termination. Cell 58:391–397

    Google Scholar 

  • McCracken A, Uhlenbush I, Gellisen G (1987) Structure of the cloned mitochondrial genome: restriction mapping and sequence of its ND-1 (URF-l) gene. Curr Genet 11:625–630

    Google Scholar 

  • Moritz C, Dowling TE, Brown WM (1987) Evolution of animal mitochondria DNA: relevance for population biology and systematics. Annu Rev Ecol Sys 18:269–292

    Google Scholar 

  • Ojala D, Merkel C, Gelfand R, Attardi G (1980) The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA. Cell 22:393–403

    Google Scholar 

  • Ojala D, Montoya J, Attardi G (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature 290:470–474

    Google Scholar 

  • Okiomoto R, Macfarlane IL, Clary DO, Wolstenholme DR (1992) The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics 130:471–498

    Google Scholar 

  • Okimoto R, Wolstenholme DR (1993) A tRNAser(IUCN) gene in Artemia salina mitochondrial DNA: a case of mistaken identity. Curr Genet 24:313–315

    Google Scholar 

  • Palmero I, Renart J, Sastre L (1988) Isolation of cDNA clones coding for mitochondrial 16S ribosomal RNA from the crustacean Artemia. Gene 68:239–248

    Google Scholar 

  • Perez ML, Valverde JR, Batuecas B, Amat F, Marco R, Garesse R (1994) Speciation in the Artemia genus: mitochondria DNA analysis of bisexual and parthenogenetic brine shrimps. J Mol Evol 38:156–168

    Google Scholar 

  • Roe BA, Ma DP, Wilson RK, Wong JFH (1985) The complete nucleotide sequence of the Xenopus laevis mitochondria genome. J Biol Chem 260:9759–9774

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AC (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    Google Scholar 

  • Sankoff D, Leduc G, Antoine N, Paquin B, Lang BF, Cedergren R (1992) Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome. Proc Natl Acad Sci USA 89:6575–6579

    Google Scholar 

  • Schmitt H, Beckmann JS, Littauer UZ (1974) Transcription of super-coiled mitochondrial DNA by bacterial RNA polymerase. Eur J Biochem 47:225–234

    Google Scholar 

  • Staden R (1986) The current status and portability of our sequence handling software. Nucleic Acids Res 14:217–231

    Google Scholar 

  • Tzeng CS, Hui CF, Shen SC, Huang PC (1992) The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. Nucleic Acids Res 20:4853–4858

    Google Scholar 

  • Valverde JR, Marco R, Garesse R (1994) A conserved heptamer motif for ribsomal RNA transcription termination in animal mitochondria. Proc Natl Acad Sci USA 91:5368–5371

    Google Scholar 

  • Wallace DC (1992) Mitochondrial genetics: a paradigm for aging and degenerative diseases. Science 256:628–632

    Google Scholar 

  • Wolstenholme DR (1992) Animal mitochondrial DNA: structure and evolution. In: Wolstenholme DR, Jeon KW (eds) International review of cytology: mitochondrial genomes, vol 141. Academic Press, New York, pp 173–216

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Correspondence to: R. Garesse

Rights and permissions

Reprints and permissions

About this article

Cite this article

Valverde, J.R., Batuecas, B., Moratilla, C. et al. The complete mitochondrial DNA sequence of the crustacean Artemia franciscana . J Mol Evol 39, 400–408 (1994). https://doi.org/10.1007/BF00160272

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00160272

Keywords

Navigation