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Fermentative degradation of dipicolinic acid (pyridine-2,6-dicarboxylic acid) by a defined coculture of strictly anaerobic bacteria

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Abstract

Degradation of dipicolinic acid (pyridine-2,6-dicarboxylic acid) under strictly anaerobic conditions was studied in enrichment cultures from marine and freshwater sediments. In all cases, dipicolinic acid was completely degraded. From an enrichment culture from a marine sediment, a defined coculture of two bacteria was isolated. The dipicolinic acid-fermenting bacterium was a Gram-negative, non-sporeforming strictly anaerobic short rod which utilized dipicolinic acid as sole source of carbon, energy, and nitrogen, and fermented it to acetate, propionate, ammonia, and 2CO2. No other substrate was fermented. This bacterium could be cultivated only in coculture with another Gram-negative, non-sporeforming rod from the same enrichment culture which oxidized acetate to CO2 with fumarate, malate, or elemental sulfur as electron acceptor, similar to Desulfuromonas acetoxidans. Since this metabolic activity is not important in substrate degradation by the coculture, the basis of the dependence of the dipicolinic acid-degrading bacterium on the sulfur reducer may be sought in the assimilatory metabolism.

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References

  • Arima, K, Kobayashi, Y (1962) Bacterial oxidation of dipicolinic acid. I. Isolation of microorganisms, their culture conditions, and end products. J Bacteriol 84: 759–764

    Google Scholar 

  • Bergmeyer, HU (1974) Methoden der enzymatischen Analyse. 3rd ed., Verlag Chemie, Weinheim

    Google Scholar 

  • Boonstra, J, Huttunen, MT & Konings, WN (1975) Anaerobic transport in Escherichia coli membrane vesicles. J Biol Chem 250: 6792–6798

    Google Scholar 

  • Dagley, S & Johnson, PA (1963) Microbial oxidation of kynurenic, xanthurenic and picolinic acid. Biochim Biophys Acta 78: 577–587

    Google Scholar 

  • Dehning, I & Schink, B (1989) Malonomonas rubra gen. nov. sp. nov., a microaerotolerant anaerobic bacterium growing by decarboxylation of malonate. Arch Microbiol 151: 427–433

    Google Scholar 

  • Harary, J (1957) Bacterial fermentation of nicotinic acid. II. Anaerobic reversible hydroxylation of nicotinic acid to 6-hydroxynicotinic acid. J Biol Chem 227: 823–831

    Google Scholar 

  • Hilpert, W, Schink, B & Dimroth, P (1984) Life by a new decarboxylation-dependent energy conservation mechanism with Na+ as a coupling ion. EMBO J 3: 1665–1670

    Google Scholar 

  • Hirschberg, R & Ensign, JC (1971) Oxidation of nicotinic acid by a Bacillus species: purification and properties of nicotinic acid and 6-hydroxynicotinic acid hydroxylases. J Bacteriol 108: 751–756

    Google Scholar 

  • Holcenberg, JS & Tsai, L (1969) Nicotinic acid metabolism. IV. Ferredoxin-dependent reduction of 6-hydroxynicotinic acid to 6-oxo-1,4,5,6-tetrahydronicotinic acid. J Biol Chem 244: 1204–1211

    Google Scholar 

  • Imhoff, D & Andreesen, JR (1979) Nicotinic acid hydroxylase from Clostridium barkeri: Selenium-dependent formation of active enzyme. FEMS Microbiol Lett 5: 155–158

    Google Scholar 

  • Kobayashi, Y & Arima, K (1962) Bacterial oxidation of dipicolinic acid. II. Identification of α-ketoglutaric acid and 3-hydroxydipicolinic acid and some properties of cell-free extracts. J Bacteriol 84: 765–771

    Google Scholar 

  • Kuenen, JG & Veldkamp, H (1972) Thiomicrospira pelophila nov. gen., nov. sp., a new obligately chemolithotrophic colourless sulfur bacterium. Antonie van Leeuwenhoek J Microbiol Serol 38: 241–256

    Google Scholar 

  • Magee, CM, Rodeheaver, G, Edgerton, MT & Edlich, RF (1975) A more reliable Gram staining technic for diagnosis of surgical infections. Am J Surg 130: 341–346

    Google Scholar 

  • Moore, FW (1949) The utilization of pyridine by microorganisms. J Gen Microbiol 3: 143–147

    Google Scholar 

  • Odom, JM & Peck, HD (1981) Localization of dehydrogenases, reductases and electron transfer components in the sulfate-reducing bacterium Desulfovibrio gigas. J Bacteriol 147: 161–169

    Google Scholar 

  • Pfennig, N (1978) Rhodocyclus purpureus gen. nov. and sp. nov., a ring-shaped, vitamin B12-requiring member of the family Rhodospirillaceae. Int J Syst Bacteriol 28: 283–288

    Google Scholar 

  • Pfennig, N & Biebl, H (1976) Desulfuromonas acetoxidans gen. nov. and sp. nov., a new anaerobic sulfur-reducing, acetateoxidizing bacterium. Arch Microbiol 110: 3–12

    Google Scholar 

  • Schink, B (1985) Fermentation of acetylene by an obligate anaerobe, Pelobacter acetylenicus sp. nov. Arch Microbiol 142: 295–301

    Google Scholar 

  • Schink, B & Pfennig, N (1982) Propionigenium modestum gen. nov. sp. nov., a new strictly anaerobic, nonsporing bacterium growing on succinate. Arch Microbiol 133: 209–216

    Google Scholar 

  • Schink, B, Kremer, DR & Hansen, TA (1987) Pathway of propionate formation from ethanol in Pelobacter propionicus. Arch Microbiol 147: 321–327

    Google Scholar 

  • Schlegel, HG (1985) Allgemeine Mikrobiologie. 6th ed. Thieme Stuttgart

    Google Scholar 

  • Shukla, OP (1984) Microbial transformation of pyridine derivatives. J Sci Indust Res 43: 98–116

    Google Scholar 

  • Sims, GK, Sommers, LE & Konopka, A (1986) Degradation of pyridine by Micrococcus luteus isolated from soil. Appl Environ Microbiol 51: 963–968

    Google Scholar 

  • Stams, AJM & Hansen, TA (1982) Oxygen labile L(+)lactate dehydrogenase activity in Desulfovibrio desulfuricans. FEMS Microbiol Lett 13: 389–394

    Google Scholar 

  • Stams, AJM, Kremer, DR, Nicolay, K, Weenk, GH & Hansen, TA (1984) Pathway of propionate formation in Desulfobulbus propionicus. Arch Microbiol 139: 167–173

    Google Scholar 

  • Stouthamer, AH (1979) The search for correlation between theoretical and experimental growth yields. In: Quayle, JR (Ed) International Review of Biochemistry, Microbial Biochemistry, Vol 21 (pp 1–47). University Park Press, Baltimore

    Google Scholar 

  • Tate, RL & Ensign, JC (1974) A new species of Arthrobacter which degrades picolinic acid. Can J Microbiol 20: 691–694

    Google Scholar 

  • Thauer, RK (1988) Citric-acid cycle, 50 years on. Modifications and an alternative pathway in anaerobic bacteria. Eur J Biochem 176: 497–508

    Google Scholar 

  • Thauer, RK, Jungermann, K & Decker, K (1977) Energy conservation in chemotrophic anaerobic bacteria. Bacteriol Rev 41: 100–180

    Google Scholar 

  • Tsai, L, Pastan, I & Stadtman, ER (1966) Nicotinic acid metabolism. II. The isolation and characterization of intermediates in the fermentation of nicotinic acid. J Biol Chem 241: 1807–1813

    Google Scholar 

  • Tschech, A, Pfennig, N (1984) Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 137: 163–197

    Google Scholar 

  • VonPlotho, O (1948) Untersuchungen an Proactinomyceten. Arch Mikrobiol 14: 12–45

    Google Scholar 

  • Watson, GK & Cain, RB (1975) Microbial metabolism of the pyridine ring. Metabolic pathways of pyridine biodegradation by soil bacteria. Biochem J 146: 157–172

    Google Scholar 

  • Wegener, WS, Reeves, HC, Rabin, R & Ajl, SJ (1968) Alternate pathways of metabolism of short-chain fatty acids. Bacteriol Rev 32: 1–26

    Google Scholar 

  • Widdel, F & Pfennig, N (1981) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. I. Isolation of new sulfate-reducing bacteria enriched with acetate from saline environments. Description of Desulfobacter postgatei gen. nov. spec. nov. Arch Microbiol 129: 395–400

    Google Scholar 

  • Widdel, F, Kohring, GW & Mayer, F (1983) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. III. Characterization of the filamentous gliding Desulfonema limicola gen. nov. sp. nov., and Desulfonema magnum sp. nov. Arch Microbiol 134: 286–294

    Google Scholar 

  • Zubay, G (1983) Biochemistry. Benjamin/Cummings Publ Co, Menlo Park, California

    Google Scholar 

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Seyfried, B., Schink, B. Fermentative degradation of dipicolinic acid (pyridine-2,6-dicarboxylic acid) by a defined coculture of strictly anaerobic bacteria. Biodegradation 1, 1–7 (1990). https://doi.org/10.1007/BF00117046

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