Abstract
Southern hybridisation was performed on ninety-six transgenic petunias that had been selected for resistance to kanamycin. Just over half of the plants contained intact copies of the T-DNA. The most common rearrangements (at least 24 plants out of 96) were simple deleted derivatives that had lost one or both ends of the T-DNA. T-DNAs lacking the left border occurred at a frequency of 20%, and estimates of the frequency of T-DNAs lacking the right border were at least this high. Three plants contained grossly rearranged T-DNAs, of which all expressed the kanamycin resistance gene but only one transmitted the gene to progeny. Two plants lacked T-DNA homology altogether and did not express kanamycin resistance in their leaves or their progeny. Circumstantial evidence suggests that plants containing a chimaeric kanamycin resistance gene driven by the ocs promoter do not root efficiently in the presence of kanamycin. There was no correlation between intactness of the T-DNA and Mendelian inheritance of the kanamycin-resistance phenotype. However, a disproportionate number of plants showing non-Mendelian inheritance had a high copy number of their T-DNA.
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Barker RF, Idler KB, Thompson DV, Kemp JD: Nucleotide sequence of the T-DNA region from the Agrobacterium tumefaciens octopine Ti-plasmid pTi15955. Plant Mol Biol 2: 335–350 (1983).
Bevan MW, Flavell RB, Chilton M-D: A chimaeric antibiotic resistance gene as a selectable marker for plant cell transformation. Nature 304: 184–187 (1983).
Birnboim HC: A rapid alkaline extraction method for the isolation of plasmid DNA. Methods Enz 100: 243–255 (1983).
Caplan AB, VanMontagu M, Schell J: Genetic analysis of integration mediated by single T-DNA borders. J Bacteriol 161: 655–664 (1985).
Chyi YS, Jorgensen RA, Goldstein D, Tanksley SD, Loaiza-Figueroa F: Locations and stability of Agrobacterium-mediated T-DNA insertions in the Lycopersicon genome. Mol Gen Genet 204: 64–69 (1986).
DeBeuckeleer M, Lemmers M, DeVos G, Willmitzer L, VanMontagu M, Schell J: Further insight on the transferred-DNA of octopine crown gall. Mol Gen Genet 183: 283–288 (1981).
Dellaporta SL, Wood J, Hicks JB: A plant DNA minipreparation: version II. Plant Mol Biol Rep 1: 19–21 (1983).
Deroles SC, Gardner RG: Expression and inheritance of kanamycin resistance in a large number of transgenic petunias generated by Agrobacterium-mediated transformation. Plant Mol Biol 11: 355–364 (1988).
Fillatti JJ, Sellmer J, McCown B, Haissig B, Comai L: Agrobacterium mediated transformation and regeneration of Populus. Mol Gen Genet 206: 192–199 (1987).
Feldmann KA, Marks MD: Agrobacterium-mediated transformation of germinating seeds of Arabidopsis thaliana: A non-tissue culture approach. Mol Gen Genet 208: 1–9 (1987).
Fraley RT, Rogers SG, Horsch RB, Sanders PR, Flick JS, Adams SP, Bittner ML, Brand LA, Fink CL, Fry JS, Galluppi GR, Goldberg SB, Hoffmann NL, Woo SC: Expression of bacterial genes in plant cells. Proc Natl Acad Sci USA 80: 4803–4807 (1983).
Fraley RT, Rogers SG, Horsch RB: Genetic transformation in higher plants. CRC Crit Revs Pl Sci 4: 1–46 (1986).
Gardner RG, Chonoles KR, Owens RA: Potato spindle tuber viroid infections mediated by the Ti plasmid of Agrobacterium tumefaciens. Plant Mol Biol 6: 221–228 (1986).
Gheysen G, Dhaese P, VanMontagu M, Schell J: DNA flux across genetic barriers: The crown gall phenomenon. In: Hohn B, Dennis ES (eds) Advances in Plant Gene Research, Vol. 2, pp. 11–47. Vienna: Springer (1985).
Gheysen G, VanMontagu M, Zambryski P: Integration of Agrobacterium tumefaciens transfer DNA (T-DNA) involves rearrangements of target plant DNA sequences. Proc Natl Acad Sci USA 84: 6169–6173 (1987).
Gielen J, DeBeuckeleer M, Seurinck J, Deboeck F, DeGreve H, Lemmers M, VanMontagu M, Schell J: The complete nucleotide sequence of the TL-DNA of the Agrobacterium tumefaciens plasmid pTiAch5. EMBO J 3: 835–846 (1984).
Hepburn AG, Clarke LE, Blundy KS, White J: Nopaline Tiplasmid pTiT37, T-DNA insertions into a flax genome. J Mol Appl Genet 2: 211–224 (1983).
Hoekema A, Hirsch PR, Hooykaas PJJ, Schilperoort RA: A binary plant vector strategy based on the separation of the vir- and T-region of the Agrobacterium tumefaciens Tiplasmid. Nature 303: 179–180 (1983).
Holsters M, Villarroel R, Gielen J, Seurinck J, DeGreve H, VanMontagu M, Schell J: An analysis of the boundaries of the octopine TL-DNA in tumours induced by Agrobacterium tumefaciens. Mol Gen Genet 190: 35–41 (1983).
Horsch RB, Fry JE, Hoffmann NL, Eichholtz D, Rogers SG, Fraley RT: A simple and generated method for transferring genes into plants. Science 227: 1229–1231 (1985).
Ish Horowicz D, Burke JF: Rapid and efficient cosmid cloning. Nucl Acids Res 9: 2989–2998 (1981).
Jen GC, Chilton M-D: The right border region of pTiT37 T-DNA is intrinsically more active than the left border region in promoting T-DNA transformation. Proc Natl Acad Sci USA 83: 3895–3899 (1986).
Jones JDG, Gilbert DE, Grady KL, Jorgensen RA: T-DNA structure and gene expression in petunia plants transformed by Agrobacterium tumefaciens C58 derivatives. Mol Gen Genet 207: 478–485 (1987).
Jorgensen R, Snyder C, Jones JDG: T-DNA is organised predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives. Mol Gen Genet 207: 471–477 (1987).
Kay R, Chan A, Daly M, McPherson J: Duplication of CaMV 35S promoter sequences creates a strong enhancer for plant genes. Science 236: 1299–1302 (1987).
Koncz C, Schell J: The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector. Mol Gen Genet 204: 383–396 (1986).
Lemmers M, DeBeuckeleer M, Holsters M, Zambryski P, Depicker A, Hernalsteens JP, VanMontagu M, Schell J: Internal organisation, boundaries and integration of Ti plasmid DNA in nopaline crown gall tumours. J Mol Biol 144: 353–376 (1980).
Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor: Cold Spring Harbour Laboratory (1982).
McKnight TD, Lillis MT, Simpson RB: Segregation of genes transferred to one plant cell from two separate Agrobacterium strains. Plant Mol Biol 8: 439–445 (1987).
Ooms G, Bakker A, Molendijk L, Wullems GJ, Gordon MP, Nester EW, Schilperoort RA: T-DNA organisation in homogeneous and heterogeneous octopine-type crown gall tissues of Nicotiana tabacum. Cell 30: 589–597 (1982).
Palmiter RD, Brinster RL: Germ-line transformation of mice. Ann Rev Genet 20: 465–499 (1986).
Peerbolte R, Leenhouts K, Hooykaas-vanSlogteren GMS, Hoge JHC, Wullems GJ, Schilperoort RA: Clones from a shooty tobacco crown gall tumour I: deletions, rearrangements and amplifications resulting in irregular T-DNA structures and organisations. Plant Mol Biol 7: 265–284 (1986).
Peerbolte R, Leenhouts K, Hooykaas-vanSlogteren GMS, Wullems GJ, Schilperoort RA: Clones from a shooty tobacco crown gall tumour II: irregular T-DNA structures and organisation, T-DNA methylation and conditional expression of opine genes. Plant Mol Biol 7: 285–299 (1986).
Peralta EG, Hellmiss R, Ream W: Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid. EMBO J 5: 1137–1142 (1986).
Petit A, Berkaloff A, Tempe J: Multiple transformation of plant cells by Agrobacterium may be responsible for the complex organisation of T-DNA in crown gall and hairy root. Mol Gen Genet 202: 388–393 (1986).
Schell J: Transgenic plants as tools to study the molecular organisation of plant genes. Science 237: 1176–1183 (1987).
Spielmann A, Simpson RB: T-DNA structure in transgenic tobacco plants with multiple independent integration sites. Mol Gen Genet 205: 34–41 (1986).
Stachel SE, Timmerman B, Zambryski P: Generation of single stranded T-DNA molecules during the initial stages of T-DNA transfer from Agrobacterium tumefaciens to plant cells. Nature 322: 706–712 (1986).
Stachel SE, Zambryski P: Agrobacterium tumefaciens and the susceptible plant cell: A novel adaptation of extracellular recognition and DNA conjugation. Cell 47: 155–157 (1986).
Thomashow MF, Nutter R, Montoya AL, Gordon MP, Nester EW: Integration and organisation of Ti-plasmid sequences in crown gall tumours. Cell 19: 729–739 (1980).
VanLijsebettens M, Inze D, Schell J, VanMontagu M: Transformed cell clones as a tool to study T-DNA integration mediated by Agrobacterium tumefaciens. J Mol Biol 188: 129–145 (1986).
Wallroth M, Gerats AGM, Rogers SG, Fraley RT, Horsch RB: Chromosomal localisation of foreign genes in Petunia hybrida. Mol Gen Genet 200: 6–15 (1986).
Wang K, Herrera-Estrella L, VanMontagu M, Zambryski P: Right 25-bp terminus sequence of the nopaline T-DNA is essential for and determines direction of DNA transfer from Agrobacterium to the plant genome. Cell 38: 455–462 (1984).
Yadav NS, Vanderleyden J, Bennett DR, Barnes WM, Chilton M-D: Short direct repeats flank the T-DNA on a nopaline Ti plasmid. Proc Natl Acad Sci USA 79: 6322–6326 (1982).
Zambryski P, Holsters M, Kruger K, Depicker A, Schell J, VanMontagu M, Goodman HM: Tumour DNA structure in plant cells transformed by A. tumefaciens. Science 209: 1385–1391 (1980).
Zambryski P, Depicker A, Kruger K, Goodman H: Tumour induction by Agrobacterium tumefaciens, analysis of the boundaries of the T-DNA. J Mol Appl Genet 1: 361–370 (1982).
Zambryski P, Joos H, Genetello C, Leemans J, VanMontagu M, Schell J: Ti-plasmid vector for the introduction of DNA into plant cells without alteration of their normal regeneration capacity. EMBO J 2: 2143–2150 (1983).
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Deroles, S.C., Gardner, R.C. Analysis of the T-DNA structure in a large number of transgenic petunias generated by Agrobacterium-mediated transformation. Plant Mol Biol 11, 365–377 (1988). https://doi.org/10.1007/BF00027393
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DOI: https://doi.org/10.1007/BF00027393