Skip to main content
Log in

Mapping of transfer RNA genes on tobacco chloroplast DNA

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

Tobacco chloroplast tRNAs have been purified by two-dimensional polyacrylamide gel electrophoresis, identified by aminoacylation, labelled at their 3′-end and hybridized to tobacco chloroplast DNA restriction fragments, in order to establish a tRNA gene map. These hybridization studies have revealed the localization of at least seven genes in each inverted repeat region, a minimum of 22 tRNA genes in the large single copy region and one tRNA gene in the small single copy region. Comparison of the tobacco chloroplast tRNA gene map to that of maize shows many similarities, but also some differences suggesting that DNA sequence rearrangements have occurred in the chloroplast genome during evolution.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Weil JH, Parthier B: Transfer RNA and aminoacyl-tRNA synthetases in plants. In Boulter D, Parthier B (eds) Encyclopedia of Plant Physiology, New Ser, Vol 14A, Springer, Heidelberg, 1982, pp 65–112.

    Google Scholar 

  2. Bohnert EJ, Crouse EJ, Schmitt JM: Organization and expression of plastid genomes. In Boulter D, Parthier B (eds) Encyclopedia of Plant Physiology, New Ser, Vol 14B, Springer, Neidelberg, 1982, pp 475–530.

    Google Scholar 

  3. Seyer P, Kowallik KV, Herrmann RG: A physical map of Nicotiana tabacum plastid DNA including the location of structural genes for ribosomal RNAs and the large subunit of ribulose bisphosphate carboxylase/oxygenase. Curr Genet 3:189–204, 1981.

    Google Scholar 

  4. Driesel AJ, Crouse EJ, Gordon K, Bohnert HJ, Herrmann RG, Steinmetz A, Mubumbila M, Keller M, Burkard G, Weil JH. Fractionation and identification of spinach chloroplast transfer RNAs and mapping of their genes on the restriction map of chloroplast DNA. Gene 6:285–306, 1979.

    Google Scholar 

  5. Mubumbila M, Gordon K, Crouse EJ, Burkard G, Weil JH: Construction of the physical map of the chloroplast DNA of Phaseolus vulgaris and localization of ribosomal and transfer RNA genes. Gene 21:257–266, 1983.

    Google Scholar 

  6. Selden RF, Steinmetz A, McIntosh L, Bogorad L, Burkard G, Mubumbila M, Kuntz M, Crouse EJ, Weil JH: Transfer RNA genes of Zea mays chloroplast DNA. Plant Molecul Biol 2:141–153, 1983.

    Google Scholar 

  7. Kuntz M, Keller M, Crouse EJ, Burkard G, Weil JH: Fractionation and identification of Euglena gracilis cytoplasmic and chloroplastic tRNAs and mapping of tRNA genes on chloroplast DNA. Curr Genet 6:63–69, 1982.

    Google Scholar 

  8. Herrmann RG, Bohnert HJ, Kowallik KV, Schmitt JM: Size, conformation and purity of chloroplast DNA from some higher plants. Biochim Biophys Acta 378:305–317, 1975.

    Google Scholar 

  9. Burkard G, Guillemaut P, Weil JH: Comparative studies of the tRNAs and the aminoacyl-tRNA synthetases from the cytoplasm and the chloroplasts of Phaseolus vulgaris. Biochim Biophys Acta 224:184–198, 1970.

    Google Scholar 

  10. Burkard G, Steinmetz A, Keller M, Mubumbila M, Crouse EJ, Weil JH: Resolution of chloroplast tRNAs by two-dimensional gel electrophoresis. In Edelman M, Hallick RB, Chua NH (eds) Methods in Chloroplast Molecular Biology, Elsevier Biomedical Press, Amsterdam, 1982, pp 347–357.

    Google Scholar 

  11. Weil JH: Distribution subcellulaire des divers tRNA de levure et d'E. coli. Bull Soc Chim Biol 51:1479–1496, 1969.

    Google Scholar 

  12. Rether B, Bonnet J, Ebel JP: Studies on tRNA Nucleotidyltransferase from Baker's yeast. Eur J Biochem 50:281–288, 1974.

    Google Scholar 

  13. Southern EM: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–517, 1975.

    Google Scholar 

  14. Mubumbila M, Burkard G, Keller M, Steinmetz A, Crouse EJ, Weil JH. Hybridization of bean, spinach, maize and Euglena chloroplast transfer RNAs with homologous and heterologous chloroplast DNAs. An approach to the study of homology between chloroplast tRNAs from various species. Biochim Biophys Acta 609: 31–39, 1980.

    Google Scholar 

  15. Koch W, Edwards K, Kossel H: Sequencing of the 16S–23S spacer in a ribosomal RNA operon of Zea mays chloroplast DNA reveals two split tRNA genes. Cell 25:203–213, 1981.

    Google Scholar 

  16. Takaiwa F, Sugiura M: Nucleotide sequence of the 16S–23S spacer region in a rRNA gene cluster from tobacco chloroplast DNA. Nucleic Acids Res 10:2665–2676, 1982.

    Google Scholar 

  17. Schwartz Z, Kossel H, Schwarz E, Bogorad L: A gene coding for tRNAVal is located near 5′ terminus of 16S rRNA gene in Zea mays chloroplast genome. Proc Natl Acad Sci USA 78:4748–4752, 1981.

    Google Scholar 

  18. Tohdoh N, Shinozaki K, Sugiura M: Sequence of a putative promoter region for the rRNA genes of tobacco chloroplast DNA. Nucleic Acids Res 9:5399–5406, 1981.

    Google Scholar 

  19. Guillemaut P, Keith G. Primary structure of bean chloroplastic tRNAPhe. FEBS Lett 84:351–356, 1977.

    Google Scholar 

  20. Steinmetz A, Krebbers ET, Schwarz Z, Gubbins EJ, Bogorad L: Nucleotide sequence of five maize chloroplast transfer RNA genes and their flanking region. J Biol Chem 258: 5503–5511, 1983.

    Google Scholar 

  21. Deno H, Kato A, Shinozaki K, Sugiura M: Nucleotide sequences of tobacco chloroplast genes for elongator tRNAMet and tRNAVal (UAC): the tRNAVal (UAC) gene contains a long intron. Nucleic Acids Res 10:7511–7520, 1982.

    Google Scholar 

  22. Pirtle R, Calagan J, Pirtle I, Kashdan M, Vreman H, Dudock B: The nucleotide sequence of spinach chloroplast methionine elongator tRNA. Nucleic Acids Res 9:183–188, 1981.

    Google Scholar 

  23. Osorio-Almeida L, Guillemaut P, Keith G, Canaday J & Weil JH: Primary structure of three leucine transfer RNAs from bean chloroplast. Biochem Biophys Res Commun 92:102–108, 1980.

    Google Scholar 

  24. Guillemaut P, Weil JH: The nucleotide sequence of the maize and spinach chloroplast isoleucine transfer RNA encoded in the 16S and 23S rDNA spacer. Nucleic Acids Res 10:1653–1659, 1982.

    Google Scholar 

  25. Canaday J, Guillemaut P, Gloeckler R, Weil JH: Comparison of the nucleotide sequences of chloroplast tRNA and tRNA from spinach and bean Plant Science Lett 20:57–62, 1980.

    Google Scholar 

  26. Steinmetz A, Gubbins EJ, Bogorad L: The anticodon of the maize chloroplast gene for tRNA is split by a large intron. Nucleic Acids Res 10:3027–3037, 1982.

    Google Scholar 

  27. Palmer JD, Thomson WF: Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost Cell 29:537–550, 1982.

    Google Scholar 

  28. Palmer JD, Stein DB: Chloroplast DNA from the fern Osmunda cinnamomea: physical organization, gene localization and comparison to angiosperm chloroplast DNA. Curr Genet 5:165–170, 1982.

    Google Scholar 

  29. Palmer JD, Zamir D: Chloroplast DNA evolution and phylogenetic relationships in Lycopersicon. Proc Natl Acad Sci USA 79:5006–5010, 1982.

    Google Scholar 

  30. Palmer JD: Chloroplast DNA exists in two orientations. Nature 301:92–93, 1983.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bergmann, P., Seyer, P., Burkard, G. et al. Mapping of transfer RNA genes on tobacco chloroplast DNA. Plant Mol Biol 3, 29–36 (1984). https://doi.org/10.1007/BF00023413

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00023413

Keywords

Navigation