Skip to main content
Log in

Isolation and characterization of fluorescent Pseudomonas associated with the roots of rice and banana grown in Sri Lanka

  • Published:
Plant and Soil Aims and scope Submit manuscript

Abstract

Bacterial populations in different parts of the rhizosphere of rice and banana in Sri lanka were examined. On rice, the number of aerobic bacteria and the population of fluorescent bacteria were higher in the rhizoplane as compared to the exorhizosphere. However, the opposite was observed with banana. Percentage of fluorescent bacteria was significantly higher on banana (10.8%) than on rice from the wet and dry zones of Sri Lanka (4.3% and 2.7%, respectively). In the endorhizosphere fraction of rice, bacterial populations were very low. Fluorescent bacteria were absent.

Based on 33 phenotypical tests, 89 fluorescent isolates were grouped into 5 clusters. The three major clusters covered the isolates belonging to the Pseudomonas fluorescens-putida group, whereas the remaining small clusters contained other UV-fluorescent bacteria. SDS-PAGE of total cell proteins enabled classification of the isolates into one of 12 different protein-polymorphic types. Only a partial correlation was found between the latter classification and the phenotypical one. Cyanogenesis was observed with strains of P. fluorescens only. Isolates P. fluorescens RW9S1 and P. cepacia RW5P1 displayed a potent antagonism against several fungi.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Bakker, A W and Schippers, B 1987 Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas spp — mediated plant growthstimulation. Soil Biol. Biochem. 19, 451–457.

    Article  Google Scholar 

  • Calinski, T and Harabasz, J 1974 A dendrite method for cluster analysis. Commun. Statistics 3, 1–27.

    Google Scholar 

  • Castric, P A 1975 Hydrogen cyanide, a secondary metabolite of Pseudomonas aeruginosa. Can. J. Microbiol. 21, 613–618

    PubMed  Google Scholar 

  • Champion, A B, Barret, E L, Palleroni, N J, Soderberg, K L, Kunisawa, R, Contopoulou, R, Wilson, A C and Doudoroff, M 1980 Evolution in Pseudomonas fluorescens. J. Gen. Microbiol. 120, 485–511

    PubMed  Google Scholar 

  • DeFeitas, J R and Germida, J J 1990 Plant growth promoting rhizobacteria for winter wheat. Can. J. Microbiol. 36, 265–272

    Google Scholar 

  • DeMot, R, Vanderleyden, J 1989 Application of two-dimensional protein analysis for strain fingerprinting and mutant analysis of Azospirillum species. Can. J. Microbiol. 35, 960–967.

    Google Scholar 

  • Domross, M 1974 The Agroclimate of Ceylon: A Contribution towards the Ecology of Tropical Crops. Franz Steiner Verlag, Wiesbaden. 259 p.

    Google Scholar 

  • Gardner, J M, Chandler, J L and Feldman, A W 1984 Growth promotion and inhibition by antibiotic-producing fluorescent pseudomonads on citrus roots. Soil Biol. Biochem. 19, 35–38.

    Google Scholar 

  • Hankin, L and Anagnostakis, S L 1975 The use of solid media for detection of enzyme production by fungi. Mycology 67, 597–607.

    Google Scholar 

  • Kleeberger, A, Castorph, H and Klingmüller, W 1983 The rhizosphere microflora of wheat and barley with special reference to gram-negative bacteria. Arch. Microbiol. 136, 306–311.

    Article  Google Scholar 

  • Kloepper, J W, Lifshitz, R and Zablotowicz, R M 1989 Freeliving bacterial inocula for enhancing crop productivity. Trends Biotechnol. 7, 39–44.

    Article  Google Scholar 

  • Kloepper, J W and Schroth, M N 1981 Plant growth-promoting rhizobacteria and plant growth under gnotobiotic conditions. Phytopathology 71, 642–644.

    Google Scholar 

  • Kloepper, J W, Schroth, M N and Miller, T D 1980 Effects of rhizosphere colonization by plant growth-promoting rhizobacteria on potato plant development and yield. Phytopathology 70, 1078–1082.

    Google Scholar 

  • Lambert, B and Joos, H 1989 Fundamental aspects of rhizobacterial plant growth promotion research. Trends Biotechnol. 7, 215–219.

    Article  Google Scholar 

  • Lambert, B, Leyns, F, VanRooyen, L, Gosselé, F, Papon, Y and Swings, J 1987 Rhizobacteria of maize and their antifungal activities. Appl. Environ. Microbiol. 53, 1866–1871.

    Google Scholar 

  • Lambert, B, Meire, P, Joos, H, Lens, P and Swings, J 1990 Fast-growing, aerobic, heterotrophic bacteria from the rhizosphere of young sugar beet plants. Appl. Environ. Microbiol. 56, 3375–3381.

    Google Scholar 

  • Leong, J 1986 Siderophores: their biochemistry and possible role in the biocontrol of plant pathogens. Annu. Rev. Phytopathol. 24, 187–209.

    Article  Google Scholar 

  • Mattar J and Digat B 1991 Influence of temperature on growth and siderophore production of Pseudomonas fluorescens-putida strains, and consequence for root colonization. In Plant Growth-Promoting Rhizobacteria: Progress and Prospects. Eds. C J Keel, B Koller and G Défago. pp 336–339. IOBC/WPRS Bulletin XIV/8.

  • Miller, H J, Henken, G and VanVeen, J A 1989 Variation and composition of bacterial populations in the rhizospheres of maize, wheat and grass cultivars. Can. J. Microbiol. 35, 656–660.

    Google Scholar 

  • Neilands, J B and Leong, S L 1986 Siderophores in relation to plant growth and disease. Annu. Rev. Plant Physiol. 37, 187–208.

    Article  Google Scholar 

  • Palleroni, N J 1986 Family I: Pseudomonaceae. In Bergey's Manual of Systematic Bacteriology. Eds. DHendricks, P H ASneath and J GHolt. pp 141–199. Williams and Wilkins. Baltimore, MD.

    Google Scholar 

  • Purseglove, J W 1979 Tropical Crops Monocotyledons. pp 162–198. Longman, Harlow, UK.

    Google Scholar 

  • Schippers, B, Bakker, A W, Bakker, P A H M, Weisbeek, P J and Lugtenberg, B 1986 Plant growth-inhibiting and stimulating rhizosphere micro-organisms. In Microbial Communities in Soil. Eds. VJensen, AKjoller and L HSörensen. pp 35–49. Elsevier Scientific, London/New York.

    Google Scholar 

  • Schroth, M N and Hancock, J G 1982 Disease-suppressive soil and root-colonizing bacteria. Science 216, 1376–1381.

    Google Scholar 

  • Schwyn, B and Neilands, J B 1987 Universal chemical assay for the detection and determination of siderophores. Anal. Biochem. 160, 47–56.

    Article  PubMed  Google Scholar 

  • Sneath, P H A and Sokal, R R 1973 Numerical Taxonomy. The Principles and Practice of Numerical Classification. Eds. DKennedy and R BPark. W.H. Freeman, San Francisco. 573 p.

    Google Scholar 

  • Stenström, I-M, Zakaria, A, Ternström, A and Molin, G 1990 Numerical taxonomy of fluorescent Pseudomonas associated with tomato roots. Antonie van Leeuwenhoek 57, 223–236.

    Article  PubMed  Google Scholar 

  • Tomashow, L S, Weller, D M, Bonsall, R F and Pierson, L S 1990 Production of the antibiotic phenazine-1-carboxylic acid by fluorescent Pseudomonas species in the rhizosphere of wheat. Appl. Environ. Microbiol. 56, 908–912.

    Google Scholar 

  • VanOutryve, M F, Gosselé, F, Kersters, K and Swings, J 1988 The composition of the rhizosphere of chicory (Cichorium intybus L. var. foliosum Hegi). Can. J. Microbiol. 34, 1203–1208.

    Google Scholar 

  • VanPeer, R, Punte, H L M, DeWeger, L A and Schippers, B 1990 Characterization of root surface and endorhizosphere pseudomonads in relation to their colonization of roots. Appl. Environ. Microbiol. 56, 2462–2470.

    Google Scholar 

  • Voisard, C, Keel, C, Haas, D and Défago, G 1989 Cyanide production by Pseudomonas fluorescens helps suppress black root rot of tobacco under gnotobiotic conditions. EMBO J. 8, 351–358.

    Google Scholar 

  • Weller, D M 1988 Biological control of soilborne plant pathogens in the rhizosphere with bacteria. Annu. Rev. Phytopathol. 26, 379–407.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Vlassak, K., Van Holm, L., Duchateau, L. et al. Isolation and characterization of fluorescent Pseudomonas associated with the roots of rice and banana grown in Sri Lanka. Plant Soil 145, 51–63 (1992). https://doi.org/10.1007/BF00009541

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00009541

Key words

Navigation