Abstract
Fishes exhibit the greatest biodiversity among the vertebrates, making them an extremely attractive group to study a number of evolutionary questions. Over the last years, the development and improvement of cytogenetic FISH analyses have substantially expanded the methods of chromosome studies and have played an important role in the precise characterization of the structure of fish genomes. Here, besides presenting the current fish-FISH protocol, which is frequently applied in many laboratories for freshwater and marine species, we also include details about the isolation and preparation of the sequences most commonly used as probes in fish-FISH experiments. Moreover, considering the quality of the chromosomal preparations in fishes, some critical steps that are crucial for the success of the experiments are also highlighted.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Eschmeyer WN, Fong JD (2016) Species by Family/subfamily. http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp. Accessed 01 Feb 2016
Oliveira C, Foresti F, Hilsdorf AWS (2009) Genetics of neotropical fish: from chromosomes to populations. Fish Physiol Biochem 35:81–100
Bertollo LAC, Takahashi CS, Moreira-Filho O (1978) Cytotaxonomic considerations on Hoplias lacerdae (Pisces, Erythrinidae). Brazil J Genet 1:103–120
Gold JR, Li YC, Shipley NS et al (1990) Improved methods for working with fish chromosomes with a review of metaphase chromosome banding. J Fish Biol 37:563–575
Foresti F, Oliveira C, Almeida Toledo LF (1993) A method for chromosome preparations from large specimens of fishes using in vitro short treatment with colchicine. Experientia 49:810–813
Howell WM, Black DA (1980) Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1-step method. Experientia 36:1014–1015
Sumner AT (1972) A simple technique for demonstrating centromeric heterochromatin. Exp Cell Res 75:304–306
Phillips RB, Konkol NR, Reed KM et al (2001) Chromosome painting supports lack of homology among sex chromosomes in Oncorhynchus, Salmo and Salvelinus. Genetica 111:119–123
Cioffi MB, Liehr T, Trifonov V et al (2013) Independent sex chromosome evolution in lower vertebrates: a molecular cytogenetic overview in the Erythrinidae fish family. Cytogenet Genome Res 141:186–194
Silva DMZA, Pansonato-Alves JC, Utsunomia R et al (2014) Delimiting the origin of a B chromosome by FISH mapping, chromosome painting and DNA sequence analysis in Astyanax paranae (Teleostei, Characiformes). PLoS One 9:e94896
Symonová R, Sember A, Majtánová Z et al (2015) Characterization of fish genomes by GISH and CGH. In: Ozouf-Costaz C, Pisano E, Foresti F, Almeida Toledo LF (eds) Fish cytogenetic techniques. Ray-fin fishes and Chondrichthyans. CCR Press, Boca Raton
Bertollo LAC, Moreira-Filho, Cioffi MB (2015) Direct chromosome preparations from freshwater teleost fishes. In: Ozouf-Costaz C, Pisano E, Foresti F, Almeida Toledo LF (eds) Fish cytogenetic techniques. Ray-fin fishes and Chondrichthyans. CCR Press, Boca Raton
Kligerman AD, Bloom SE (1977) Rapid chromosome preparations from solid tissues of fishes. J Fish Res Board Can 34:266–269
Claussen U, Michel S, Mühlig P et al (2002) Demystifying chromosome preparation and the implications for the concept of chromosome condensation during mitosis. Cytogenet Genome Res 98:136–146
López-Flores I, Garrido-Ramos MA (2012) The repetitive DNA content of eukaryotic genomes. Genome Dyn 7:1–28
Cioffi MB, Bertollo LAC (2012) Chromosomal distribution and evolution of repetitive DNAs in fish. Genome Dyn 7:197–221
Cioffi MB, Martins C, Centofante L et al (2009) Chromosomal variability among allopatric populations of Erythrinidae fish Hoplias malabaricus: mapping of three classes of repetitive DNAs. Cytogenet Genome Res 125:132–141
Martins C, Galetti PM Jr (1999) Chromosomal localization of 5S rDNA genes in Leporinus Fish (Anostomidae, Characiformes). Chrom Res 7:363–367
Cross I, Rebordinos L (2005) 5S rDNA and U2 snRNA are linked in the genome of Crassostrea angulata and Crassostrea gigas oysters: does the (CT)n(GA)n micro-satellite stabilize this novel linkage of large tandem arrays? Genome 48:1116–1119
Pan ZQ, Prives C (1989) U2 snRNA sequences that bind U2-specific proteins are dispensable for the function of U2 snRNP in splicing. Genes Dev 3:1887–1898
Volff JN, Bouneau L, Ozouf-Costaz C et al (2003) Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet 19:674–678
Volff JN, Korting C, Sweeney K et al (1999) The non-LTR retrotransposon Rex3 from the fish Xiphophorus is widespread among teleosts. Mol Biol Evol 16:1427–1438
Volff JN, Korting C, Froschauer A et al (2001) Non-LTR retrotransposons encoding a restriction enzyme-like endonuclease in vertebrates. J Mol Evol 52:351–360
Zwick MS, Hanson RE, McKnight TD et al (1997) A rapid procedure for the isolation of Cot-1 DNA from plants. Genome 40:138–142
Acknowledgments
We wish to thank the Brazilian funding agencies FAPESP (Fundação de Amparo à Pesquisa do Estado de São Paulo, Process 2014/23172-4) and CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico, Process 304992/2015-1) for the financial support.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer-Verlag Berlin Heidelberg
About this protocol
Cite this protocol
Yano, C.F., Bertollo, L.A.C., Cioffi, M.d.B. (2017). Fish-FISH: Molecular Cytogenetics in Fish Species. In: Liehr, T. (eds) Fluorescence In Situ Hybridization (FISH). Springer Protocols Handbooks. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-52959-1_44
Download citation
DOI: https://doi.org/10.1007/978-3-662-52959-1_44
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-662-52957-7
Online ISBN: 978-3-662-52959-1
eBook Packages: Springer Protocols