Abstract
An odd feature of the HLA-DRB region is its remarkable haplotype polymorphism: At least five groups of haplotypes differing both in length and in number of genes exist in the human population at appreciable frequencies. We have demonstrated that similar DRB haplotype polymorphism exists also in the apes - the chimpanzee and the gorilla. Moreover, certain haplotype segments have apparently remained intact since the human-chimpanzee (gorilla) divergence more than five million years ago. Hence, not only allelic but also haplotype polymorphisms evolve trans-specifically at the DRB region. The evolutionary origins of the individual haplotype groups and the possible reasons for the extreme linkage disequilibrium between certain DRB genes (the frozen haplotypes) are discussed.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Andersson, G., Larhammar, D., Widmark, E., Servenius, B., Peterson, P.A., and Rask, L.A.: Class II genes of the human major histocompatibility complex: Organization and evolutionary relationship of the DRß genes. J Biol Chem 262: 8748–8758, 1987
Arden, B. and Klein, J.: Biochemical comparison of major histocompatibility complex molecules from different subspecies of Mus musculus: Evidence for trans-specific evolution of alleles. Proc Natl Acad Sci USA 79: 2342–2346, 1982
Awdeh, Z.L., Raum, D., Yunis, E.J., and Alper, C.A.: Extended HLA complement allele haplotypes. Evidence for T/t like complex in man. Proc Natl Acad Sci USA 80: 259–263, 1983
Batchelor, J.R., Curtoni, S., Mervart, H., Noreen, H., Davey, N.J., Moses, J.H., and Amoroso, A. Antigen Society No. 22 Report (DR2). In B. Dupont (ed.) Immunobiology of HLA. Vol. I. Histocompatibility Testing 1987, pp. 240–242. Springer-Verlag, New York 1989
Bidwell, J.: DNA-RFLP analysis and genotyping of HLA-DR and DQ antigens. Immunol Today 9: 18–23, 1988
Bidwell, J.F., Bidwell, E.A., Savage, D.A., Middleton, D., Klouda, P.T., and Bradley, B.A.: A DNA-RFLP typing system that positively identifies serologically well-defined and ill-defined HLA-DR and DQ alleles, including DRwl0. Transplantation 45: 640–646, 1988
Blanck, G. and Strominger, J.L.: Molecular organization of the DQ subregion (DO-DX-DV- DQ) of the human MHC and its evolutionary implications. J Immunol 141: 1734–1737, 1988
Bodmer, W.F. and Cavalli-Sforza, L.L.: Genetics, Evolution, and Man. W.H. Freeman, San Francisco 1976
Bodmer, J.G., Pickbourne, P., and Richards, S.: Ia Serology. In W.F. Bodmer et al. (eds.) Histocompatibility Testing 1977, pp. 35–84, Munksgaard, Copenhagen 1977
Böhme, J., Andersson, M., Andersson, G., Möller, E., Peterson, P.A., and Rask, L.: HLA- DR ß genes vary in number between different DR specificities whereas the number of DQ ß genes is constant. J Immunol 135: 2149–2155, 1985
Bontrop, R.E., Broos, L.A.M., Pham, K., Bakas, R.M., Otting, N., and Jonker, M.: The chimpanzee major histocompatibility complex class II DR subregion contains an unexpectedly high number of beta chain genes. Immunogenetics 52: 272–280, 1990
Brändle, U., Ono, H., Figueroa, F., and Klein, J.: Organization of major histocompatibility complex DRB genes in the chimpanzee. Submitted Bridges
Bridges, C.B., Skoog, E.N., and Li, J.-C.: Genetical and cytological studies of a deficiency (Notopleurat) in the second chromosome of Drosophila melanogaster. Genetics 2 1:788–795, 1936
Cepellini, R., Curtoni, E.S., Mattiuz, P.L., Miggiano, V., Scudeller, G., and Serra, A.: Genetics of leukocyte antigens: A family study of segregation and linkage. In E.S. Curtoni, P.L. Mattiuz, and R.M. Tosi (eds.): Histocompatibility Testing 1967, pp. 149–184, Munksgaard, Copenhagen 1967
Corell, A., Martin-Villa, J.M., Morales, P., De Juan, M.D., Varela, P., Vicario, J.L., Martinez-Laso, A., and Arnaiz-Villena, A.: Exon-2 nucleotide sequences, polymorphism and haplotype distribution of a new HLA-DRB gene: HLA-DRB6. Mol Immunol 28: 533–543, 1991
Dausset, J. and Pla, M. HLA complexe majeur d’histocompatibilité de l’hommes. Flammarion, Paris 1989
Deevey, E.S., Jr.: The human population. Sci Am 203 (3): 195–204, 1960
Didier, D.K., Schiffenbauer, J., Shuman, S., Abruzzini, L.F., Gorski, J., Watling, D.L., Tieber, V.L., and Schwartz, B.D.: Characterization of two distinct DRß chain alleles at the ßIII locus of the DR5 haplotype: ßIII alleles are highly conserved. J Immunol 137: 2627–2631, 1986
Dupont, B. (ed.): Immunobiology of HLA, Vol. 2: Immunogenetics and Histocompatibility. Springer-Verlag, New York 1989
Dunham, I., Sargent, C.A., Dawkins, R.L., and Duncan Campbell, R.: An analysis of variation in the long-range genomic organization of the human major histocompatibility complex class II region by pulsed-field gel electrophoresis. Genomics 5: 787–796, 1989
Erlich, H.A., Scharf, S.J., Long, C.M., and Horn, C.T.: Analysis of isotypic and allotypic sequence variation in the HLA-DRß region using the in vitro enzymatic amplification of specific DNA segments. In B. Dupont (ed.): Immunobiology of HLA. Vol. II, pp. 181–185, Springer-Verlag, New York 1989
Fan, W., Kasahara, M., Gutknecht, J., Klein, D., Mayer, W.E., Jonker, M., and Klein, J.: Shared class II Mhc polymorphisms between humans and chimpanzees. Hum Immunol 26:107–121, 1989
Felsenstein, J.: Phylogenies from molecular sequences: Inference and reliability. Annu Rev Genet 22: 521–565, 1988
Figueroa, F., Günther, E., and Klein, J.: Mhc polymorphism pre-dating speciation. Nature 335: 265–267, 1988
Figueroa, F., O’hUigin, C., Inoko, H., and Klein, J.: Primate DRB6 pseudogenes -- clue to the evolutionary origin of the HLA-DR2 haplotype. Immunogenetics, in press 1991
Gorski, J.: HLA-DR ß-chain polymorphism. Second domain polymorphism reflects evolutionary relatedness of alleles and may explain public serologic epitopes. J Immunol 143: 329–333, 1989a
Gorski, J.: The HLA-DRw8 lineage was generated by a deletion in the DRB region followed by first domain diversification. J Immunol 142: 4041–4045, 1989
Gorski, J. and Mach, B.: Polymorphism of human Ia antigens: gene conversion between two DRß loci results in a new HLA-D/DR specificity. Nature 322: 61–10, 1986
Grahovac, B., Mayer, W., Vincek, V., Figueroa, F., O’hUigin, C., Tichy, H., and Klein, J.: Major histocompatibility complex DRB genes of a new world monkey, the cottontop tamarin (Saguinus oedipus). Mol Biol Evol, in press 1991
Groves, C.P.: Systematics of great apes. In D.R. Swindler and J. Erwin (eds.): Comparative Primate Biology. Vol. I. Systematics, Evolution, and Anatomy, pp. 187–217, Alan R. Liss, New York 1986
Grumet, F.C. and Ness, D.B.: Joint report: DRw10. In P. Terasaki (ed.): Histocompatibility Testing 1980, p. 542–545, Springer-Verlag, New York 1980
Gustafsson, K., Wiman, K., Emmoth, E., Larhammar, D., Böhme, J., Hyldig-Nielsen, J.J., Ronnne, H., Peterson, P.A., and Rask, L.: Mutations and selection in the generation of class Π histocompatibility antigen polymorphism. EMBO J 3: 1655–1661, 1984
Gyllensten, U.B. and Erlich, H.A.: Ancient roots for polymorphism at the HLA-DQ alpha locus in primates. Proc Natl Acad Sci USA 86: 9986–9990, 1989
Gyllensten, U.B., Lashkari, D., and Erlich, H.A.: Allelic diversification at the class II DQB locus of the mammalian major histocompatibility complex. Proc Natl Acad Sci USA 87: 1835–1839, 1990
Hartl, D.L. and Clark, A.G.: Principles of Population Genetics. 2nd. ed. Sinauer, Sunderland, MA 1989
Holmes, E.C., Pesole, G., and Saccone, C.: Stochastic models of molecular evolution and the estimation of phylogeny and rates of nucleotide substitution in the hominoid primates. J Hum Evol 18: 775–794, 1989
Hurley, C.K., Giles, R.C., Nunez, G., DeMars, R., Nadler, L., Winchester, R., Stastny, P., and Capra, D.C.: Molecular localization of human class II MT2 and MT3 determinants. J Exp Med 160: 472–493, 1984
Jarman, A.P. and Well, R.A.: Hypervariable ministatellites: recombinators or innocent bystanders? Trends Genet 5: 367–371, 1989
Jonsson, A.-K., Andersson, L., and Rask, L.: A cellular and functional split in the DRw8 haplotype is due to a single amino acid replacement (DRßser57-asp57). Immunogenetics 29: 308–316, 1989
Kasahara, M., Klein, D., Fan, W., and Gutknecht, J.: Evolution of the class II major histocompatibility complex alleles in higher primates. Immunol Rev. 113: 65–82, 1990
Kasahara, M., Klein, D., Vincek, V., Sarapata, D.E., and Klein, J.: The DRB subregion of the gorilla major histocompatibility complex: Evidence for linkage disequilibrium conserved across species. J Immunol., submitted 1991
Kawai, J. Ando, A., Sato, T., Nakatsuji, T., Tsuji, K., and Inoko, H.: Analysis of gene structure and antigen determinants of DR2 antigens using DR gene transfer into mouse L cells. J Immunol 142: 312–317, 1989
Kendall, E., Todd, J.A., and Campbell, R.D.: Molecular analysis of the MHC class II region in DR4, DR7, and DR9 haplotypes. Immunogenetics, in press 1991
Kimura, M.: Estimation of evolutionary distances between homologous nucleotide sequences. Proc Natl Acad Sci USA 78:454–458, 1981
Kimura, M.: The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge 1983
Klein, J.: Generation of diversify at MHC loci: Implications for T cell receptor repertoires. In M. Fougereau and J. Dausset (eds.): Immunology 80: Progress in Immunology TV, pp. 239–253. Academic Press, London 1980
Klein, J. and Schönbach, C.: Origins of Mhc diversity. In B.G. Solheim, E. Möller, and S. Ferrone (eds.): The HLA System. Basic Concepts and Clinical Importance in Transplantation Immunology. Springer-Verlag, Heidelberg, in press 1991
Klein, J. and Takahata, N.: The major histocompatibility complex and the quest for origins. Immunol Rev 113: 5–25,1990
Klein, J., Kasahara, M., Gutknecht, J., and Figueroa, F.: Origin and function of Mhc polymorphism. Chem Immunol 49: 35–50,1990
Klein, D., Vincek, V., Kasahara, M., Schönbach, C., O’hUigin, C., and Klein, J.: Gorilla Mhc-DRB pseudogene orthologous to HLA-DRBVIII. Hum Immunol, in press 1991
Lawlor, D.A., Ward, F.E., Ennis, P.D., Jackson, A.P., and Parham, P.: HLA-A and B polymorphisms predate the divergence of humans and chimpanzees. Nature 335: 268–271, 1988
Lee, S., Nunez-Roldan, A., Dwyer, E., Pompeo, L., and Winchester, R.: Definition of DRw10 by restriction fragment length polymorphism. Tissue Antigens 33: 466–474, 1989
Long, E.O., Wake, C.T., Gorski, J., and Mach, B.: Complete sequence of an HLA-DR ß chain deduced from a cDNA clone and identification of multiple non-allelic DR ß chain genes. EMBO J 2: 389–394, 1983
Marsh, S.G.E. and Bodmer, J.G.: HLA class II nucleotide sequences, 1991. Immunogenetics 33: 321–334 1991
Martin, R.D.: Primate Origins and Evolution: A Phylogenetic Reconstruction. Chapman and Hall, London 1990
Matsuyama, T., Schwenzer, J., Silver, J., and Winchester, R.: Structural relationships between the DRß1 and DRß2 subunits in DR4, 7, and w9 haplotypes and the DRw53 (MT3) specificity. J Immunol 137: 934–940, 1986
Matsuyama, T., Winchester, R., Lee, S., Shookster, L., and Nunez-Roldan, A.: Identification of the DRw10 DRß1-chain allele as encoding a polymorphic class II major histocompatibility complex epitope otherwise restricted to DRß2 molecules of the DRw53 type. / Immunol 140: 537–543, 1988
O’hUigin, C. and Klein, J. The age and evolution of the HLA-DRB pseudogene. In J. Klein and D. Klein (eds.): Molecular Evolution of the Major Histocompatibility Complex. Springer-Verlag, Heidelberg 1991
Mayer, W.E., Jonker, M., Klein, D., Ivanyi, P., van Seventer, G., and Klein, J.: Nucleotide sequences of chimpanzee MHC class I alleles: Evidence for trans-species mode of evolution. EMBO J 7: 2765–2774, 1988
McConnell, T.J., Talbot, W.S., Mclndoe, R.A., and Wakeland, E.K.: The origin of Mhc class II gene polymorphism within the genus Mus. Nature 332: 651–654, 1988
Mellars, P. and Stringer, C. (eds.): The Human Revolution. Princeton University Press, Princeton, New Jersey 1989
Merryman, P., Gregersen, P.K., Lee, S., Silver, J., Nunez-Roldan, N., Crapper, R., and Winchester, R.: Nucleotide sequence of a DRw10 ß chain cDNA clone. Identity of the third D region with that of the DRw53 allele of the ß2 locus and as the probable site encoding a polymorphic MHC class II epitope. J Immunol 140: 2447–2452, 1988
Nei, M.: Human evolution at the molecular level. In T. Ohta and K. Aoki (eds.): Population Genetics and Molecular Evolution, pp. 41–64, Springer-Verlag, Berlin 1985
Navarette, C., Seki, T., Miranda, A., Winchester, R., and Gregersen, P.K.: DNA sequence analysis of the HLA-DRw12 allele. Hum Immunol 25: 51–58, 1989
Niven, M.J., Hitman, G.A., Pearce, H., Marshal, B., and Sachs, J.A.: Large haplotype- specific differences in inter-genic distances in human MHC shown by pulsed field electrophoresis mapping of healthy and Type 1 diabetic subjects. Tissue Antigens 35: 19–24, 1990
Riisome, K., Sorensen, I.J., Moller, B., Kruse, T.A., Grangaard, B., and Lamm, L.U.: HLA- DR typing using restriction fragment length polymorphism (RFLP) with one enzyme. Tissue Antigens 31: 141–150, 1988
Rollini, P., Mach, B., and Gorski, J.: Linkage map of three HLA-DR ß chain genes: Evidence for a recent duplication event. Proc Natl Acad Sci USA 82: 7197–7201, 1985
Saitou, N. and Nei, M.: The neighbor-joining method. A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406–425, 1987
Satta, Y., Takahata, N., Schönbach, C., Gutknecht, J., and Klein, J.: Calibrating evolutionary rates at major histocompatibility loci. In J. Klein and D. Klein (eds.): Molecular Evolution of the Major Histocompatibility Complex. Springer-Verlag, Heidelberg, 1991
Satyanarayana, K. and Strominger, J.L.: DNA sequences near a meiotic recombination breakpoint within the human HLA-DQ region. Immunogenetics, in press 1991
Schwartz, J.H.: The Red Ape. Orang-utans and Human Origins. Houghton Mifflin Co., Boston 1987
Semana, G., Bignon, J.D., Quillivic, F., Cheneau, M.L., Hernion, E., Muller, J.Y., Genetet, B., and Fauchet, R.: Definition of DRw10 specificity by restriction fragment length polymorphism. Tissue Antigens 32: 113–120, 1988
Simons, M.J., Wheeler, R., Cohen, D., Lalonel, J.-M., and Dupont, B.: Restriction fragment length polymorphism of HLA genes: Summary of the Tenth International Workshop Southern Blot Analysis. In B. Dupont (ed.) Immunobiology of HLA. Vol. I. Histocompatibility Testing 1987, pp. 959–1023. Springer-Verlag, New York 1989
Sorrentino, R., Lillie, J., and Strominger, J.L.: Molecular characterization of MT3 antigens by two-dimensional gel electrophoresis, NH2-terminal amino acid sequence analysis and Southern-blot analysis. Proc Natl Acad Sci USA 82: 3794–3798, 1985
Spies, T., Sorrentino, R., Boss, J.M., Okada, K., and Strominger, J.L.: Structural organization of the DR subregion of the human major histocompatibility complex. Proc Natl Acad Sci USA 82: 5165–5169,1985
Steinmetz, M., Uematsu, Y., and Fischer Lindahl, K.: Hotspots of homologous recombination in mammalian genomes. Trends Genet 3: 7–10, 1987
Stormont, C.: Linked genes, pseudoalleles, and blood groups. Amer Nat 89: 105–116, 1955
Taylor, C.J., Ugozzoli, L., Tanigaki, N., Tosi, R., Bunce, M., Ting, A., and Ferrara, G.B.: Antigen Society No. 29 Report (DRw52). In B. DuPont (ed.): Immunobiology of HLA. Vol. 2: Immunogenetics and Histocompatibility. Springer-Verlag, New York 1989
Tieber, V.L., Abruzzini, L.F., Didier, D.K., Schwartz, B.D., and Rotwein, P.: Complete characterization and sequence of an HLA class II DRß chain cDNA from the DR5 haplotype. J Biol Chem 261: 2738–2742, 1986
Toguchi, T., Burmester, G., Nunez-Roldan, A., Gregersen, P., Seremetis, S., Lee, S., Szer, I., and Winchester, R.: Evidence for the separate molecular expression of four distinct polymorphic Ia epitopes on cells of DR4 homozygous individuals. Hum Immunol 10: 69–81, 1984
Tokunaga, K., Saueracker, G., Kay, P.H., Christiansen, F.T., Anand, R., and Dawkins, R.L.: Extensive deletions and insertions in different MHC supratypes detected by pulsed field gel electrophoresis. J Exp Med 168: 933–940, 1988
Tokunaga, K., Kay, P.H., Christiansen, F.T., Saueracker, G., and Dawkins, R.L.: Comparative mapping of the human major histocompatibility complex in different racial groups by pulsed-field gel electrophoresis. Hum Immunol 26: 99–106, 1989
Vincek, V., Klein, D., Figueroa, F., Hauptfeld, V., Kasahara, M., O’hUigin, C., Mach, B., and Klein, J.: The evolutionary origin of the HLA-DR3 haplotype. Immunogenetics, in press 1991
WHO Nomenclature Committee for Factors of the HLA System: Nomenclature for factors of the HLA system, 1990 Immunogenetics 33: 301–309, 1991
Zhu, Z., Vincek, V., Figueroa, F., Schönbach, C., and Klein, J.: Mhc-DRB genes of the pigtail macaque (Macaca nemestrina): Implications for the evolution of human DRB genes. Mol Biol Evol, in press 1991
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1991 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Klein, J., O’hUigin, C., Kasahara, M., Vincek, V., Klein, D., Figueroa, F. (1991). Frozen Haplotypes in Mhc Evolution. In: Klein, J., Klein, D. (eds) Molecular Evolution of the Major Histocompatibility Complex. NATO ASI Series, vol 59. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-84622-9_23
Download citation
DOI: https://doi.org/10.1007/978-3-642-84622-9_23
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-84624-3
Online ISBN: 978-3-642-84622-9
eBook Packages: Springer Book Archive