Abstract
Diatoms are among the most diverse groups of eukaryotic microorganisms and there are probably well in excess of 100,000 species (Mann and Droop 1996).The beauty and unbelievable variation of their intricately shaped and ornamented silica cell wall, called the frustule, have attracted taxonomists and naturalists alike (Round et al. 1990). More recently, ultrastructure, sexual reproduction, and the development of their unique type of zygote, called the auxospore, have also become the focus of research.
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References
Anderson RA, Saunders GW, Paskind MP, Sexton JP (1993) Ultrastructure and 18S ribosomal-RNA gene sequence for Pelagomonas calceolata gen. et sp. – nov. and the description of a new algal class, the Pelagophyceae classis nov. J Phycol 29:701–715
Baldauf JG (1992) Middle Eocene through early Miocene diatom floral turnover. In: Prothero DR, Berggren WA (eds) Eocene–Oligocene climatic and biotic evolution. Princeton Univ Press,Princeton, pp 310–326
Baldi F, Malej A, Minacci A, Milanesi C, Vignani R (1998) Is diatom lysis in extensive mucilage of Adriatic Sea due to a viral infection? Abstracts, Algal Virus Workshop, 14–18 June 1998,Department of Microbiology, University of Bergen, Bergen, Norway
Bates SS, Davidovich NA (2002) Factors affecting the sexual reproduction of diatoms, with emphasis on Pseudo-nitzschia spp. In: Proceedings of the LIFEHAB Workshop, Majorca, October 2001 (in press)
Barron JA,Mahood AD (1993) Exceptionally well-preserved early Oligocene diatoms from glacial sediments of Prydz Bay, East Antarctica. Micropaleontology 39:29–45
Bhattacharya D, Medlin L (1995) The phylogeny of plastids: a review based on comparisons of small-subunit ribosomal RNA coding regions. J Phycol 31:489–498
Brott LL, Naik RR, Pikas DJ, Kirkpatrick SM, Tomlin DW, Whitlock PW, Clarson SJ, Stone MO (2001) Ultrafast holographic nanopatterning of biocatalytically formed silica. Nature 413:291–293
Cavalier-Smith T, Chao EE (1996) 18S rRNA sequence of Heterosigma carterae (Raphidophyceae) and the phylogeny of the heterokont algae (Ochrophyta). Phycologia 35:500–510
Chai JY, Lee JJ (1999) Initial recognition of endosymbiotic diatom surface antigens by the larger foraminifer Amphistegina lobifera. Symbiosis 26:39–53
Chai JY, Lee JJ (2000) Recognition, establishment and maintenance of diatom endosymbiosis in foraminifera. Micropaleontology 46:182–195
Chepurnov VA,Mann DG (1997) Variation in the sexual behaviour of natural clones of Achnanthes longipes. Eur J Phycol 32:147–154
Chesnick JM, Kooistra WHCF,Wellbrock U,Medlin LK (1997) Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta). J Eukaryotic Microbiol 44:314–320
Cifelli R (1969) Radiation of Cenozoic planktonic Foraminifera. Syst Zool 18:154–168
Cooper SR (1995) Diatoms in sediment cores from the mesohaline Chesapeake Bay, USA. Diat Res 10:39–89
Cox EJ (1981) The use of chloroplasts and other features of the living cell in the taxonomy of naviculoid diatoms. In: Ross R (ed) Proceedings of the 6th symposium on recent and fossil diatoms. Koeltz, Koenigstein, pp 115–133
Cox EJ (1993) Diatom systematics – a review of past and present practice and a personal vision for future development. Nov Hedw Beih 106:1–20
Crawford RM, Gardner C,Medlin LK (1994). The genus Attheya. I.A description of four new taxa,and the transfer of Gonioceros septentrionalis and G. armata. Diat Res 9:27–51
Daugbjerg,N,Andersen RA (1997) A molecular phylogeny of the heterokont algae based on analyses of chloroplast-encoded rbcL sequence data. J Phycol 33:1031–1041
Daugbjerg N,Guillou L (2001) Phylogenetic analyses of Bolidophyceae (Heterokontophyta) using rbcL gene sequences support their sister group relationship to diatoms.Phycologia 40:153–161
Delwiche CF, Kuhsel M, Palmer JD (1995) Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids.Mol Phylogenet Evol 4:110–128
Drebes G (1977) Sexuality. In: Werner D (ed) The biology of diatoms. Botanical monographs.Blackwell, Oxford, pp 250–283
Droop SJM, Sims PA, Mann DG, Pankhurst RJ (1993) A taxonomic database and linked iconograph for diatoms. Hydrobiologia 269/270:503–508
Edlund MB, Stoermer EF (1997) Ecological, evolutionary, and systematic significance of diatom life histories. J Phycol 33:897–918
Ehara M, Inagaki Y,Watanabe KI, Ohama T (2000) Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution. Curr Genet 37:29–33
Falciatore A, Bowler C (2002) Revealing the secrets of marine diatoms. Annu Rev Plant Physiol 53:109–130
Falkowski PG, Raven JA (1997) Aquatic photosynthesis. Blackwell, Oxford, 375 pp
Falkowski PG, Barber RT, Smetacek V (1998) Biochemical controls and feedbacks on ocean primary production. Science 281:200–206
Fryxell GA, Medlin LK (1981) Chain forming diatoms: evidence of parallel evolution in Chaetoceros.Cryptogamie Algol 2:3–29
Gersonde R, Bárcena MA (1998) Revision of the late Pliocene-Pleistocene diatom biostratigraphy for the northern belt of the Southern Ocean. Micropaleontology 44:1–15
Gersonde R, Harwood DM (1990) Lower Cretaceous diatoms from ODP leg 113 site 693 (Wedell Sea) II. Vegetative cells. In: Barker PF, Kennett JP (eds) Proceedings of the ocean drilling program scientific results, vol 113. Publications Distribution Center, Ocean Drilling Program,1000 Discovery Drive, College Station, Texas, TX 77845–9547, pp 365–403
Gibson R (1979) An ultrastructure study of Pseudohimantidium pacificum Hust. & Krasske (Bacillariophyceae: Protoraphidaceae) with special reference to the labiate processes. NovHedw 64:147–60
Goldman JC (1993) Potential role of large oceanic diatoms in new primary production. Deep Sea Res I/40:159–168
Gould SJ, Lewontin RC (1979) The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme. Proc R Soc Lond B 205:581–598
Graham LE,Wilcox LW (2000) Algae. Prentice-Hall, London
Guillard RRL, Kilham P (1978) The ecology of marine planktonic diatoms. In: Werner D (ed) The biology of diatoms. Botanical monographs 13. Univ California Press, Berkeley, pp 372–469
Guillou L, Chrétiennot-Dinet M-J, Medlin LK, Claustre H, Loiseaux-de Goër S, Vaulot D (1999)
Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae class. nov. (Heterokonta). J Phycol 35:368–381
Günther F, Folke C (1993) Characteristics of nested living systems. J Biol Syst 1:257–274
Günther S, Gleitz M, Dieckmann GS (1999) Biogeochemistry of Antarctic Sea ice: a case study on platelet layers at Drescher Inlet,Weddell Sea. Mar Ecol Progr Ser 177:1–13
Håkansson H, Chepurnov V (2000) A study of variation in valve morphology of the diatom Cyclotella meneghiniana in monoclonal cultures: effect of auxospore formation and different salinity conditions. Diat Res 14:251–272
Harwood DM, Gersonde R (1990) Lower Cretaceous diatoms from ODP leg 113 site 693 (Wedell Sea) II. Resting spores chrysophycean cysts an endoskeletal dinoflagellate and notes on the origin of diatoms. In: Barker PF, Kennett JP (eds) Proceedings of the ocean drilling program scientific results, vol 113 Publications Distribution Center,Ocean Drilling Program, 1000 Discovery Drive, College Station, Texas, TX 77845–9547, pp 403–425
Harwood DM, Nikolaev VA (1995) Cretaceous diatoms: morphology, taxonomy, biostratigraphy.In: Blome CD (eds) Siliceous microfossils. Paleontological society short courses in paleontology,vol 8. Publications Distribution Center, Ocean Drilling Program, 1000 Discovery Drive,College Station, Texas, TX 77845–9547, pp 81–106
Hasle GR (1974) The “mucilage pore of pennate diatoms. Nov Hedw Beih 45:167–194
Hasle G, Syvertsen E (1996) Marine Diatoms. In: Tomas CR (ed) Identifying marine diatoms and dinoflagellates. Academic Press, San Diego, pp 5–385
Hillis DM, Moritz C, Mable BK (eds) (1996) Molecular systematics, 2nd edn. Sinauer Associates,Sunderland, MA, 655 pp
Holfeld H (2000) Infection of the single-celled diatom Stephanodiscus alpinus by the chytrid Zygorhizidium: parasite distribution within host population, changes in host cell size, and host-parasite size relationship. Limnol Oceanogr 45:1440–1444
Kaczmarska I, Bates SS, Ehrman JM, Léger C (2000) Fine structure of the gamete, auxospore and initial cell in the pennate diatom Pseudo-nitzschia multiseries (Bacillariophyta).Nov Hedw 71:337–357
Kilham SS, Theriot EC, Fritz SC (1996) Linking planktonic diatoms and climate change using resource theory in the large lakes of the Yellowstone ecosystem. Limnol Oceanogr 41:1052–1062
Kociolek JP (1986) Determining character polarity in diatoms: an alternative approach. Diat Res1:189–192
Kociolek JP, Stoermer EF (1986) Phylogenetic relationships and classification of monoraphid diatoms based on phenetic and cladistic methodologies. Phycologia 25:297–303
Kociolek JP, Stoermer EF (1988) A preliminary investigation of the phylogenetic relationships among the freshwater, apical pore field-bearing cymbelloid and gomphonemoid diatoms (Bacillariophyceae). J Phycol 24:377–385
Kociolek JP, Stoermer EF (1989) Phylogenetic relationships and evolutionary history of the diatom genus Gomphoneis. Phycologia 28:438–454
Kociolek JP, Stoermer EF (1993) The diatom genus Gomphocymbella O. Müller: taxonomy, ultrastructure and phylogenetic relationships. Nov Hedw Beih 106:71–91
Kociolek JP,Williams DM (1987) Unicell ontogeny and phylogeny: examples from the diatoms.Cladistics 3:274–284
Kociolek JP, Theriot EC,Williams DM (1989) Inferring diatom phylogeny: a cladistic perspective.Diat Res 4:289–300
Kooistra WHCF, Medlin LK (1996) The evolution of the diatoms (Bacillariophyta) IV. A reconstruction of their age from small subunit rRNA coding regions and the fossil record. Mol Phylogenet Evol 6:391–407
Kröger N,Wetherbee R (2000) Pleuralins are involved in theca differentiation in the diatom Cylindrotheca fusiformis. Protist 151:263–273
Kröger N,Deutzmann R, Sumper M (2000) Polycationic peptides from diatom biosilica that direct silica nanosphere formation. Science 286:1129–1132
Lange-Bertalot H (1980) Zur systematischen Bewertung der Bandförmigen Kolonien bei Navicula und Fragilaria. Nov Hedw 33:723–787
Lee JJ, Reimer CW (1984) Isolation and identification of endosymbiotic diatoms. In: Mann DG(ed) Proceedings of the 7th Int Diatom Symp. Koeltz, Koenigstein, pp 327–343
Lee RE, Kugrens P (2000) Commentary: ancient atmospheric CO2 and the timing of evolution of secondary endosymbioses. Phycologia 39:167–172
Li C-W,Volcani BE (1987) Four new apochlorotic diatoms. Br Phycol J 22:375–382
Lundholm N, Daugbjerg N, Moestrup (2001) Phylogeny of the Bacillariaceae with emphasis on the genus Pseudo-nitzschia (Bacillariophyceae) based on partial LSU rDNA. Eur J Phycol37:115–134
Maldonado M, Carmona MC, Uriz MJ, Cruzado A (1999) Decline in Mesozoic reef-building sponges explained by silicon limitation. Nature 401:785–788.
Mann DG (1982a) Structure, life history and systematics of Rhoicosphenia (Bacillariophyta) II.Auxospore formation and perizonium structure of Rh. curvata. J Phycol 18:264–274
Mann DG (1982b) Auxospore formation in Licmophora (Bacillariophyta). Plant Syst Evol 139:289–294
Mann DG (1984) An ontogenetic approach to diatom systematics. In:Mann DG (ed) Proceedings of the 7th Int Diatom Symp. Koeltz, Koenigstein, pp 113–144
Mann DG (1993) Patterns of sexual reproduction in diatoms. Hydrobiologia 269/270:11–20
Mann DG (1996) Chloroplast morphology, movements and inheritance in diatoms. In:Chaudhary BR, Agrawal SB (eds) Cytology, genetics and molecular biology of algae. SPB Academic Publ,Amsterdam, pp 249–274
Mann DG (1998) Shifting sands: the use of the lower taxonomic ranks in diatoms. Diatom 13:13–17
Mann DG (1999) The species concept in diatoms. Phycological reviews 18. Phycologia 38:437–495
Mann DG, Droop SJM (1996) Biodiversity, biogeography and conservation of diatoms. Hydrobiologia 336:19–32
Mann DG, Stickle AJ (1989) Meiosis, nuclear cyclosis, and auxospore formation in Navicula sensustricto (Bacillariophyta). Br Phycol J 24:167–181
Mann DG, Simpson GE, Sluiman HJ, Möller M (2001) rbcL gene tree of diatoms: a second large data-set for phylogenetic reconstruction. Phycologia 40(4) [Suppl]:1–2
McLaughlin RB (1992) Diatom microscopy: harmonic analysis of the diatom valve outline. Microscope40:265–298
Medlin L, Elwood HJ, Stickel S, Sogin ML (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding regions. Gene 71:491–499
Medlin, LK, Elwood HJ, Stickel S, Sogin ML (1991) Morphological and genetic variation within the diatom Skeletonema costatum (Bacillariophyta): evidence for a new species, Skeletonema pseudocostatum. J Phycol 27:514–524
Medlin LK,Williams DM, Sims PA (1993) The evolution of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions. Eur J Phycol 28:261–275
Medlin LK, Gersonde R, Kooistra WHCF, Wellbrock U (1996a) Evolution of the Diatoms (Bacillariophyta). II.Nuclear-encoded small-subunit rRNA sequence comparisons confirm a paraphyletic origin for the centric diatoms.Mol Biol Evol 13:67–75
Medlin LK, Kooistra WHCF, Gersonde R,Wellbrock U (1996b) Evolution of the diatoms (Bacillariophyta):molecular evidence for the origin of the Thalassiosirales.Nov Hedw 112:221–234
Medlin LK,Kooistra WHCF,Gersonde R, Sims PA,Wellbrock U (1997a) Mini-review: is the origin of the diatoms related to the end-Permian mass extinction? Nov Hedw 65:1–11
Medlin LK, Kooistra WHCF, Potter D, Saunders GW, Andersen RA (1997b) Phylogenetic relationships of the “golden algae” (haptophytes, heterokont chromophytes) and their plastids.In: Bhattacharya D (ed)Origins of algae and their plastids. Springer, Berlin Heidelberg New York, pp 187–219
Medlin LK, Kooistra WHCF, Schmid A-MM (2000) A review of the evolution of the diatoms –a total approach using molecules, morphology and geology. In: Witkowski A, Sieminska J(eds) The origin and early evolution of the diatoms: fossil, molecular and biogeographical approaches. W Szafer Institute of Botany, Polish Academy of Sciences, Cracow, pp 13–35
Mereschkowsky C (1901) Études sur l’endochrome des diatomées.Mem Acad Imp Sci St Petersb Ser 8/11:1–40
Mitchell BG,Holm-Hansen O (1991) Observations and modeling of the Antarctic phytoplankton crop in relation to mixing depth. Deep-Sea Res 38:981–1007
Newell ND (1967) Revolutions in the history of life. Geol Soc Am Spec Pap 89:63–91
Page RDM, Holmes EC (1998) Molecular evolution: a phylogenetic approach. Blackwell,Malden,MA
Pappas JL, Stoermer EF (1995) Multidimensional analysis of diatom morphological phenotypic variation and relation to niche. Ecoscience 2:357–367
Paterson DM,Hagerthey SE (2001) Microphytobenthos in contrasting coastal ecosystems: biology and dynamics. In: Reise K (ed) Ecological comparisons of sedimentary shores. Springer,Berlin Heidelberg New York, pp 105–125
Pickett-Heaps J, Schmid A-MM,Edgar LA (1990) The cell biology of diatom valve formation.Progr Phycol Res 7:1–168
Pickett-Heaps JD,Hill DRA, Blaze KL (1991) Active gliding motility in an araphid marine diatom,Ardissonea (formerly Synedra) crystallina. J Phycol 27:718–725
Popper K (1959) The logic of scientific discovery. Hutchinson, London
Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics14:817–818
Raven JA (1982) The energetics of freshwater algae; energy requirements for biosynthesis and volume regulation. New Phytol 92:1–20
Raven JA (1983) The transport and function of silicon in plants. Biol Rev 58:179–207
Reynolds CS (1984) The ecology of freshwater phytoplankton. Cambridge Univ Press, Cambridge
Rivera P, González U, Barrales H (1986) Cingulum and valve morphology of Pseudohimantidium Husted & Krasske (Bacillariophyceae). Phycologia 25:19–27
Round FE (1981) The ecology of algae. Cambridge Univ Press, Cambridge
Round FE, Crawford RM (1990) Phylum Bacillariophyta. In:Margulis L, Corliss JO,Melkonian M,Chapman DJ (eds) Handbook of protoctista. Jones and Barlett, Boston, pp 574–596
Round FE, Crawford RM,Mann DG (1990) The diatoms. Biology and morphology of the genera.Cambridge Univ Press, Cambridge
Schmid A-MM (1989) Geitler’s “Plattenband” in the diatom Synedra cf. ulna in the light of TEM investigations. Plant Syst Evol 164:239–252
Schmidt A, Schmidt M, Fricke F,Heiden H, Müller O,Hustedt F (1874–1959) Atlas der Diatomeen-Kunde. Reisland, Leipzig, Heft 1–120 Tafeln 1–480
Schütt F (1889) Über Auxosporenbildung der Gattung Chaetoceros. Ber Dtsch Bot Ges 7:361–363
Simonsen R (1970) Protoraphidaceae, eine neue Familie der Diatomeen. Nov Hedw 31:377–394
Simonsen R (1979) The diatom system: ideas on phylogeny. Bacillaria 2:9–71
Smetacek V (1998) Biological oceanography: diatoms and the silicate factor. Nature 391:224–225
Smith W (1853) A synopsis of the British Diatomaceae, vol 1.Van Voorst, London
Sober E (1990) Let’s razor Ockham’s razor. In: Knowles D (ed) Explanation and its limits. RoyalInstitute of Philosophy [Suppl] 27:73–94. Cambridge Univ Press, Cambridge
Sörhannus U, Gasse F, Perasso R, Baroin-Tourancheau A (1995) A preliminary phylogeny of diatoms based on 28S ribosomal RNA sequence data. Phycologia 34:65–73
Stoermer EF, Smol JP (1999) The diatoms.Applications for the environmental and earth sciences.Cambridge Univ Press, Cambridge
Strel’nikovaNI(1974) Diatomei pozdego mela (Zapadnaya Sibir’). Nauka,Moscow
Strel’nikova NI (1992) Paleogenovye diatomovye vodorosli. Saint Petersburg Univ, St Petersburg
Swofford DL(2000) “PAUP* Phylogenetic Analysis Using Parsimony (* and other methods)Version 4.0b8”. Sinauer Associates, Sunderland, MA
Syvertsen EE (1977) Thalassiosira rotula and T. gravida: ecology and morphology.Nov Hedw Beih54:99–112
Theriot EC (1992) Clusters, species concepts and morphological evolution of diatoms. Syst Biol41:141–157
Theriot EC, Fritz SC, Gresswell RE (1997) Long-term limnological data from the larger lakes ofYellowstone National Park. J Arct Alp Res 29:304–331
Van den Hoek C, Mann DG, Jahns HM (1995) Algae, an introduction to phycology. Cambridge Univ Press, Cambridge
VanLandingham SL (1967–1979) Catalog of the fossil and recent genera and species of diatoms and their synonyms, vols 1967–1979. Cramer, Lehre, 4654 pp
Von Stosch HA (1982) On auxospore envelopes in diatoms. Bacillaria 5:127–156
VrielingEG, Beelen TPM, van Santen, RA, Gieskes WWC (2000) Nanoscale uniformity of pore architecture in diatomaceous silica: a combined small and wide angle X-ray scattering study.J Phycol 36:146–159
Vyverman W, Sabbe K, Mann DG, Kilroy C, Vyverman R, Vanhoutte K, Hodgson D (1998)Eunophora gen. nov. (Bacillariophyta) from Tasmanian highland lakes: description and comparison with Eunotia and amphoroid diatoms. Eur J Phycol 33:95–111
WileyEO, Siegel-Causey D, Brooks DR, Funk VA (1991) The compleat cladist. Univ Kans Mus Nat Hist Spec Publ 19:1–158
Williams DM (1993) Diatom nomenclature and the future of taxonomic database studies. Nov Hedw Beih 106:21–31
Zechman FW, Zimmer EA, Theriot EC (1994) Use of ribosomal DNA internal transcribed spacers for phylogenetic studies in diatoms. J Phycol 30:507–512
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Kooistra, W.H., De Stefano, M., Mann, D.G., Medlin, K. (2003). The Phylogeny of the Diatoms. In: Müller, W.E.G. (eds) Silicon Biomineralization. Progress in Molecular and Subcellular Biology, vol 33. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-55486-5_3
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