Abstract
A well-designed growth medium is one of the key elements of a successful microbial fermentation. In this chapter, the roles and sources of individual components of submerged and solid-state fermentation media are described. These components include C and N sources, water, minerals, growth factors, precursors, and antifoams. The use of low-value by-products and waste streams as fermentation substrates is also discussed. The design and optimization of fermentation media and considerations for scale-up are critical to the ultimate success of industrial fermentation processes.
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References
Aiba S, Humphrey AE, Millis NF, editors. Scale-up. Biochemical engineering. 2nd ed. New York: Academic Press; 1973. p. 195–217.
Aidoo KE, Nout MJR, Sarkar PK. Occurrence and function of yeasts in Asian indigenous fermented foods. FEMS Yeast Res. 2006;6(1):30–9. https://doi.org/10.1111/j.1567-1364.2005.00015.x.
Al-Ajlani M, Sheikh M, Ahmad Z, et al. Production of surfactin from Bacillus subtilis MZ-7 grown on pharmamedia commercial medium. Microb Cell Fact. 2007;6:17. https://doi.org/10.1186/1475-2859-6-17.
Allikian K, Rasiah I, Zhang S. Effects of common defoaming agents on the growth of the endotoxin-free ClearColi® Escherichia coli host. In: Abstracts of the Society for Industrial Microbiology and Biotechnology Annual Meeting, New Orleans, LA, USA, 24-28 July 2016; 2016.
Ano T, Jin G, Mizumoto S, et al. Solid state fermentation of lipopeptide antibiotic iturin A by using a novel solid state fermentation reactor system. J Environ Sci. 2009;21:S162–5. https://doi.org/10.1016/s1001-0742(09)60064-4.
Aoki MA, Pastore GM, Park YK. Microbial transformation of sucrose and glucose to erythritol. Biotechnol Lett. 1993;15(4):383–8. https://doi.org/10.1007/BF00128281.
Babu PD, Bhakyaraj R, Vidhyalakshmi R, et al. A low cost nutritious food “tempeh” – a review. World J Dairy Food Sci. 2009;4(1):22–7.
Babu CR, Ketanapalli H, Beebi SK, et al. Wheat bran-composition and nutritional quality: a review. Adv Biotech & Micro. 2018;9(1):MS.ID.555754. https://doi.org/10.19080/AIBM.2018.09.555754.
Boenigk R, Bowien S, Gottschalk G. Fermentation of glycerol to 1, 3-propanediol in continuous cultures of Citrobacter freundii. Appl Microbiol Biotechnol. 1993;38(4):453–7. https://doi.org/10.1007/BF00242936.
Bohn L, Meyer AS, Rasmussen SK. Phytate: impact on environment and human nutrition. A challenge for molecular breeding. J Zhejiang Univ Sci B. 2008;9(3):165–91. https://doi.org/10.1631/jzus.B0710640.
Boni L, Cangini M, Grifoni A, et al. Polysaccharide production by microalgae from the Adriatic Sea. In: Faranda FM, Guglielmo L, Sperle G, editors. Mediterranean ecosystems: structures and processes. Milan: Springer-Verlag; 2001. p. 61–4. https://doi.org/10.1007/978-88-470-2105-1_7.
Boon L, Hoeks F, van der Lans R, et al. Comparing a range of impellers for “stirring as foam disruption”. Biochem Eng J. 2002;10(3):183–95. https://doi.org/10.1016/s1369-703x(01)00180-2.
Botella C, Diaz A, de Ory I, et al. Xylanase and pectinase production by Aspergillus awamori on grape pomace in solid state fermentation. Process Biochem. 2007;42(1):98–101. https://doi.org/10.1016/j.procbio.2006.06.025.
Bultel-Ponce V, Debitus C, Berge JP, et al. Metabolites from the sponge-associated bacterium Micrococcus luteus. J Mar Biotechnol. 1998;6:233–6.
Chang PK, Matsushima K, Takahashi T, et al. Understanding nonaflatoxigenicity of Aspergillus sojae: a windfall of aflatoxin biosynthesis research. Appl Microbiol Biotechnol. 2007;76(5):977–84. https://doi.org/10.1007/s00253-007-1116-4.
Chen YS, Yanagida F, Hsu JS. Isolation and characterization of lactic acid bacteria from Dochi (fermented black beans), a traditional fermented food in Taiwan. Lett Appl Microbiol. 2006;43(2):229–35. https://doi.org/10.1111/j.1472-765x.2006.01922.x.
Chen HZ, Liu ZH, Dai SH. A novel solid state fermentation coupled with gas stripping enhancing the sweet sorghum stalk conversion performance for bioethanol. Biotechnol Biofuels. 2014;7(1):53. https://doi.org/10.1186/1754-6834-7-53.
Cheng YQ, Hu Q, Li LT, et al. Production of Sufu, a traditional Chinese fermented soybean food, by fermentation with Mucor flavus at low temperature. Food Sci Technol Res. 2009;15(4):347–52. https://doi.org/10.3136/fstr.15.347.
Chiou RYY, Cheng SL. Isoflavone transformation during soybean Koji preparation and subsequent Miso fermentation supplemented with ethanol and NaCl. J Agric Food Chem. 2001;49(8):3656–60. https://doi.org/10.1021/jf001524l.
Chiou RY, Ferng S, Beuchat L. Fermentation of low-salt Miso as affected by supplementation with ethanol. Int J Food Microbiol. 1999;48(1):11–20. https://doi.org/10.1016/s0168-1605(99)00033-1.
Cho YH, Shin IS, Hong SM, et al. Production of functional high-protein beverage fermented with lactic acid bacteria isolated from Korean traditional fermented food. Korean J Food Sci Anim Resour. 2015;35:189–96. https://doi.org/10.5851/kosfa.2015.35.2.189.
Chua JY, Lu Y, Liu SQ. Biotransformation of soy whey into soy alcoholic beverage by four commercial strains of Saccharomyces cerevisiae. Int J Food Microbiol. 2017;262:14–22. https://doi.org/10.1016/j.ijfoodmicro.2017.09.007.
Clarkson J, Cui Z, Darton R. Protein denaturation in foam. J Colloid Interface Sci. 1999;215(2):323–32. https://doi.org/10.1006/jcis.1999.6255.
Cocaign-Bousquet M, Garrigues C, Novak L, et al. Rational development of a simple synthetic medium for the sustained growth of Lactococcus lactis. J Appl Bacteriol. 1995;79(1):108–16. https://doi.org/10.1111/j.1365-2672.1995.tb03131.x.
Coutinho EM. Gossypol: a contraceptive for men. Contraception. 2002;65(4):259–63. https://doi.org/10.1016/s0010-7824(02)00294-9.
Daniel HJ, Otto RT, Reuss M, et al. Sophorolipid production with high yields on whey concentrate and rapeseed oil without consumption of lactose. Biotechnol Lett. 1998a;20(8):805–7. https://doi.org/10.1023/B:BILE.0000015927.29348.1a.
Daniel HJ, Reuss M, Syldatk C. Production of sophorolipids in high concentration from deproteinized whey and rapeseed oil in a two stage fed batch process using Candida bombicola ATCC 22214 and Cryptococcus curvatus ATCC 20509. Biotechnol Lett. 1998b;20(12):1153–6. https://doi.org/10.1023/A:1005332605003.
Darvishi F, Destain J, Nahvi I, et al. High-level production of extracellular lipase by Yarrowia lipolytica mutants from methyl oleate. New Biotechnol. 2011;28(6):756–60. https://doi.org/10.1016/j.nbt.2011.02.002.
Dean JA, editor. Lange’s handbook of chemistry. 12th ed. McGraw-Hill: New York; 1979.
Denkov ND, Marinova KG, Tcholakova SS. Mechanistic understanding of the modes of action of foam control agents. Adv Colloid Interface Sci. 2014;206:57–67. https://doi.org/10.1016/j.cis.2013.08.004.
Deshpande M, Daniels L. Evaluation of sophorolipid biosurfactant production by Candida bombicola using animal fat. Bioresour Technol. 1995;54(2):143–50. https://doi.org/10.1016/0960-8524(95)00116-6.
Du R, Yan J, Feng Q, et al. A novel wild-type Saccharomyces cerevisiae strain TSH1 in scaling-up of solid-state fermentation of ethanol from sweet sorghum stalks. PLOS One. 2014;9(4):e94480. https://doi.org/10.1371/journal.pone.0094480.
Elander R. Industrial production of β-lactam antibiotics. Appl Microbiol Biotechnol. 2003;61(5-6):385–92. https://doi.org/10.1007/s00253-003-1274-y.
Erdogrul O, Azirak S. Review of the studies on the red yeast rice (Monascus purpureus). Turk Electr J Biotech. 2004;2:37–49.
Ergun SO, Urek RO. Production of ligninolytic enzymes by solid state fermentation using Pleurotus ostreatus. Ann Agrar Sci. 2017;15(2):273–7. https://doi.org/10.1016/j.aasci.2017.04.003.
Fox SL, Bala GA. Production of surfactant from Bacillus subtilis ATCC 21332 using potato substrates. Bioresour Technol. 2000;75(3):235–40. https://doi.org/10.1016/s0960-8524(00)00059-6.
Gadd GM. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology. 2010;156(3):609–43. https://doi.org/10.1099/mic.0.037143-0.
Gadelha ICN, Fonseca NBS, Oloris SCS, et al. Gossypol toxicity from cottonseed products. Sci World J. 2014;2014:231635. https://doi.org/10.1155/2014/231635.
Ghaly A, Kamal M. Submerged yeast fermentation of acid cheese whey for protein production and pollution potential reduction. Water Res. 2004;38(3):631–44. https://doi.org/10.1016/j.watres.2003.10.019.
Ghorbani F, Younesi H, Sari AE, et al. Cane molasses fermentation for continuous ethanol production in an immobilized cells reactor by Saccharomyces cerevisiae. Renew Energy. 2011;36(2):503–9. https://doi.org/10.1016/j.renene.2010.07.016.
Ghosalkar A, Sahai V, Srivastava A. Optimization of chemically defined medium for recombinant Pichia pastoris for biomass production. Bioresour Technol. 2008;99(16):7906–10. https://doi.org/10.1016/j.biortech.2008.01.059.
Ghosh JS. Solid state fermentation and food processing: a short review. J Nutr Food Sci. 2016;06(01):1000453. https://doi.org/10.4172/2155-9600.1000453.
Goldammer T. The Brewer’s handbook. Clifton: KVP Publishers; 1999.
Gouda MK, Swellam AE, Omar SH. Production of PHB by a Bacillus megaterium strain using sugarcane molasses and corn steep liquor as sole carbon and nitrogen sources. Microbiol Res. 2001;156(3):201–7. https://doi.org/10.1078/0944-5013-00104.
Grewal H, Kalra K. Fungal production of citric acid. Biotechnol Adv. 1995;13(2):209–34. https://doi.org/10.1016/0734-9750(95)00002-8.
Gunasekaran S, Poorniammal R. Optimization of fermentation conditions for red pigment production from Penicillium sp. under submerged cultivation. Afr J Biotechnol. 2008;7(12):1894–8. https://doi.org/10.4314/ajb.v7i12.58846.
Heldal M, Norland S, Fagerbakke KM, et al. The elemental composition of bacteria: a signature of growth conditions? Mar Pollut Bull. 1996;33(1-6):3–9. https://doi.org/10.1016/s0025-326x(97)00007-6.
Herbert D. Stoichiometric aspects of microbial growth. In: Dean CR, Ellwood DC, Evans CGT, et al., editors. Continuous culture 6: applications and new fields. Chichester: Ellis Horwood; 1976. p. 1–30.
Hernandez-Orte P, Ibarz M, Cacho J, et al. Addition of amino acids to grape juice of the Merlot variety: effect on amino acid uptake and aroma generation during alcoholic fermentation. Food Chem. 2006;98(2):300–10. https://doi.org/10.1016/j.foodchem.2005.05.073.
Hesham AEL, Mohamed NH, Ismail MA, et al. Degradation of natural rubber latex by new Streptomyces labedae strain ASU-03 isolated from Egyptian soil. Microbiology. 2015;84(3):351–8. https://doi.org/10.1134/S0026261715030078.
Hoondal G, Tiwari R, Tewari R, et al. Microbial alkaline pectinases and their industrial applications: a review. Appl Microbiol Biotechnol. 2002;59(4-5):409–18. https://doi.org/10.1007/s00253-002-1061-1.
Hull SR, Yang BY, Venzke D, et al. Composition of corn steep water during steeping. J Agric Food Chem. 1996;44(7):1857–63. https://doi.org/10.1021/jf950353v.
Japan Sake and Shochu Makers Association. A comprehensive guide to Japanese sake. Tokyo: Japan Sake and Shochu Makers Association; 2011.
Jeong H, Park S, Pak V, et al. Fermented soybean products and their bioactive compounds. In: El-Shemy H, editor. Soybean and health. InTechOpen; 2011. https://doi.org/10.5772/10670.
Jiang H, Chen Y, Jiang P, et al. Methanotrophs: multifunctional bacteria with promising applications in environmental bioengineering. Biochem Eng J. 2010;49(3):277–88. https://doi.org/10.1016/j.bej.2010.01.003.
Jin G, Zhu Y, Xu Y. Mystery behind Chinese liquor fermentation. Trends Food Sci Technol. 2017;63:18–28. https://doi.org/10.1016/j.tifs.2017.02.016.
Kale SK, Deshmukh AG, Dudhare MS, et al. Microbial degradation of plastic: a review. J Biochem Tech. 2015;6(2):952–61.
Kamath PV, Dwarakanath BS, Chaudhary A, et al. Optimization of culture conditions for maximal lovastatin production by Aspergillus terreus (KM017963) under solid state fermentation. HAYATI J Biosci. 2015;22(4):174–80. https://doi.org/10.1016/j.hjb.2015.11.001.
Kampen WH. Nutritional requirements in fermentation processes. In: Vogel HC, Todaro CM, editors. Fermentation and biochemical engineering handbook: principles, process design and equipment. 3rd ed. Westwood: Elsevier; 2014. p. 37–57.
Koser S, Anwar Z, Iqbal Z, et al. Utilization of Aspergillus oryzae to produce pectin lyase from various agro-industrial residues. J Radiat Res Appl Sci. 2014;7(3):327–32. https://doi.org/10.1016/j.jrras.2014.05.001.
Kosseva MR. Recovery of commodities from food wastes using solid-state fermentation. In: Kosseva M, Webb C, editors. Food industry wastes. 1st ed: Elsevier; 2013. p. 77–102. https://doi.org/10.1016/B978-0-12-391921-2.00005-6.
Kovacs E, Wirth R, Maroti G, et al. Biogas production from protein-rich biomass: fed-batch anaerobic fermentation of casein and of pig blood and associated changes in microbial community comosition. PLOS One. 2013;8(10):e77265. https://doi.org/10.1371/journal.pone.0077265.
Kroner K, Hummel W, Volkel J, et al. Effects of antifoams on cross-flow filtration of microbial suspensions. In: Drioli E, Nakagaki M, editors. Membranes and membrane processes. New York: Springer; 1986. p. 223–32.
Kumar Y, Dhingra MD. Inventive utilization of soybean whey as beverage. Int J Multidiscip Approach Stud. 2014;1(2):100–7.
Lakshmi BS, Kangueane P, Abraham B, et al. Effect of vegetable oils in the secretion of lipase from Candida rugosa (DSM 2031). Lett Appl Microbiol. 1999;29(1):66–70. https://doi.org/10.1046/j.1365-2672.1999.00578.x.
Lee SY. Bacterial polyhydroxyalkanoates. Biotechnol Bioeng. 1996a;49(1):1–14. https://doi.org/10.1002/(SICI)1097-0290(19960105)49:1<1::AID-BIT1>3.0.CO;2-P.
Lee SY. High cell-density culture of Escherichia coli. Trends Biotechnol. 1996b;14(3):98–105. https://doi.org/10.1016/0167-7799(96)80930-9.
Lee PC, Lee WG, Lee SY, et al. Succinic acid production with reduced by-product formation in the fermentation of Anaerobiospirillum succiniciproducens using glycerol as a carbon source. Biotechnol Bioeng. 2001;72:41–8. https://doi.org/10.1002/1097-0290(20010105)72:1<41::AID-BIT6>3.0.CO;2-N.
Lee YH, Tominaga M, Hayashi R, et al. Aspergillus oryzae strains with a large deletion of the aflatoxin biosynthetic homologous gene cluster differentiated by chromosomal breakage. Appl Microbiol Biotechnol. 2006;72(2):339–45. https://doi.org/10.1007/s00253-005-0282-5.
Levin L, Herrmann C, Papinutti VL. Optimization of lignocellulolytic enzyme production by the white-rot fungus Trametes trogii in solid-state fermentation using response surface methodology. Biochem Eng J. 2008;39(1):207–14. https://doi.org/10.1016/j.bej.2007.09.004.
Li S, Zhu D, Li K, et al. Soybean curd residue: Composition, utilization, and related limiting factors. ISRN Ind Eng. 2013;2013:1–8. https://doi.org/10.1155/2013/423590.
Liggett RW, Koffler H. Corn steep liquor in microbiology. Bacteriol Rev. 1948;12:297–311.
Lilly VG. The chemical environment for growth. 1. media, macro and micronutrients. In: Ainsworth GC, Sussman AS, editors. The fungi, vol. 1. New York: Academic Press; 1965. p. 465–78.
Luria SE. The bacterial protoplasm: composition and organisation. In: Gunsalus IC, Stanier RY, editors. The bacteria, vol. 1. New York: Academic Press; 1960. p. 1–34.
Magonet E, Hayen P, Delforge D, et al. Importance of the structural zinc atom for the stability of yeast alcohol dehydrogenase. Biochem J. 1992;287(2):361–5. https://doi.org/10.1042/bj2870361.
Majumdar M, Majumdar S. Effects of minerals on neomycin production by Streptomyces fradiae. Appl Microbiol. 1965;13(2):190–3.
Makkar RS, Cameotra SS. Utilization of molasses for biosurfactant production by two Bacillus strains at thermophilic conditions. J Am Oil Chem Soc. 1997;74(7):887–9. https://doi.org/10.1007/s11746-997-0233-7.
Manan MA, Webb C. Modern microbial solid state fermentation technology for future biorefineries for the production of added-value products. Biofuel Res J. 2017;4(4):730–40. https://doi.org/10.18331/brj2017.4.4.5.
Martins DAB, do Prado HFA, Leite RSR, et al. Agroindustrial wastes as substrates for microbial enzymes production and source of sugar for bioethanol production. In: Kumar S, editor. Integrated waste management, vol. II. Rijeka: InTechOpen; 2011. p. 319–60.
Matthews CB, Kuo A, Love KR, et al. Development of a general defined medium for Pichia pastoris. Biotechnol Bioeng. 2017;115(1):103–13. https://doi.org/10.1002/bit.26440.
Mazumdar-Shaw K, Suryanarayan S. Commercialization of a novel fermentation concept. Adv Biochem Eng/Biotechnol. 2003;85:29–42. https://doi.org/10.1007/3-540-36466-8_2.
Mercade M, Monleon L, de Andres C, et al. Screening and selection of surfactant-producing bacteria from waste lubricating oil. J Appl Bacteriol. 1996;81(2):161–6. https://doi.org/10.1111/j.1365-2672.1996.tb04494.x.
Minier M, Fessier P, Colinart P, et al. Study of the fouling effect of antifoam compounds on the crossflow filtration of yeast suspensions. Sep Sci Technol. 1995;30(5):731–50. https://doi.org/10.1080/01496399508013889.
Mitchell DA, Krieger N, Berovic M, editors. Solid-state fermentation bioreactors: fundamentals of design and operation. Berlin: Springer; 2006.
Mitchell DA, De Lima Luz LF, Krieger N. Bioreactors for solid-state fermentation. In: Moo-Yong M, editor. Comprehensive biotechnology. 2nd ed. Manchester: Elsevier; 2011. p. 347–60.
Moukamnerd C, Kawahara H, Katakura Y. Feasibility study of ethanol production from food wastes by consolidated continuous solid-state fermentation. J Sustain Bioenergy Syst. 2013;3(02):143–8. https://doi.org/10.4236/jsbs.2013.32020.
Mukhtar H, Ikram-Ul-Haq. Production of acid protease by Aspergillus niger using solid state fermentation. Pakistan J. Zool. 2009;41(4):253–60.
Musselman ME, Pettit RS, Derenski KL. A review and up-date of red yeast rice. J Evid Based Complementary Altern Med. 2011;17(1):33–9. https://doi.org/10.1177/2156587211429703.
Nagavalli M, Ponamgi S, Girijashankar V, et al. Solid state fermentation and production of rifamycin SV using Amycolatopsis mediterranei. Lett Appl Microbiol. 2014;60(1):44–51. https://doi.org/10.1111/lam.12332.
Nayanashree G, Thippeswamy B. Natural rubber degradation by laccase and manganese peroxidase enzymes of Penicillium chrysogenum. Int J Environ Sci Technol. 2014;12(8):2665–72. https://doi.org/10.1007/s13762-014-0636-6.
Neidhardt FC, editor. Escherichia coli and Salmonella: cellular and molecular biology (2 Volumes). 2nd ed. Washington, D.C.: ASM Press; 1996.
Nitschke M, Pastore GM. Biosurfactant production by Bacillus subtilis using cassava-processing effluent. Appl Biochem Biotechnol. 2004;112(3):163–72. https://doi.org/10.1385/ABAB:112:3:163.
Nitschke M, Pastore GM. Production and properties of a surfactant obtained from Bacillus subtilis grown on cassava wastewater. Bioresour Technol. 2006;97(2):336–41. https://doi.org/10.1016/j.biortech.2005.02.044.
Noah KS, Bruhn DF, Bala GA. Surfactin production from potato process effluent by Bacillus subtilis in a chemostat. In: Davison BH, editor. Twenty-sixth symposium on biotechnology for fuels and chemicals. New York: Springer; 2005. p. 465–73.
O’Toole DK. Characteristics and use of Okara, the soybean residue from soy milk production – a review. J Agric Food Chem. 1999;47(2):363–71. https://doi.org/10.1021/jf980754l.
Ohno A, Ano T, Shoda M. Production of a lipopeptide antibiotic surfactin with recombinant Bacillus subtilis. Biotechnol Lett. 1992;14(12):1165–8. https://doi.org/10.1007/BF01027022.
Pratoomchai R. Increasing the value of rice by transformation into red yeast rice. J Sci Technol MSU. 2015;34(5):503–12.
Priatni S, Damayanti S, Saraswaty V, et al. The utilization of solid substrates on Monascus fermentation for anticholesterol agent production. Procedia Chem. 2014;9:34–9. https://doi.org/10.1016/j.proche.2014.05.005.
Prins A, van’t Riet K. Proteins and surface effects in fermentation: foam, antifoam and mass transfer. Trends Biotechnol. 1987;5(11):296–301. https://doi.org/10.1016/0167-7799(87)90080-1.
Pritchett J, Baldwin SA. The effect of nitrogen source on yield and glycosylation of a human cystatin C mutant expressed in Pichia pastoris. J Ind Microbiol Biotechnol. 2004;31(12):553–8. https://doi.org/10.1007/s10295-004-0181-2.
Quesada-Chanto A, Afschar AS, Wagner F. Microbial production of propionic acid and vitamin B12 using molasses or sugar. Appl Microbiol Biotechnol. 1994;41:378–83. https://doi.org/10.1007/BF01982523.
Rahardjo YS, Tramper J, Rinzema A. Modeling conversion and transport phenomena in solid-state fermentation: a review and perspectives. Biotechnol Adv. 2006;24(2):161–79. https://doi.org/10.1016/j.biotechadv.2005.09.002.
Ratzke C, Denk J, Gore J. Ecological suicide in microbes. Nat Ecol Evol. 2018;2(5):867–72. https://doi.org/10.1038/s41559-018-0535-1.
Ravindran V, Abdollahi MR, Bootwalla SM. Nutrient analysis, metabolizable energy, and digestible amino acids of soybean meals of different origins for broilers. Poult Sci. 2014;93(10):2567–77. https://doi.org/10.3382/ps.2014-04068.
Riesenberg D, Schulz V, Knorre W, et al. High cell density cultivation of Escherichia coli at controlled specific growth rate. J Biotechnol. 1991;20(1):17–27. https://doi.org/10.1016/0168-1656(91)90032-q.
Rigo E, Ninow JL, Luccio MD, et al. Lipase production by solid fermentation of soybean meal with different supplements. LWT-Food Sci Technol. 2010;43(7):1132–7. https://doi.org/10.1016/j.lwt.2010.03.002.
Rizzo G, Baroni L. Soy, soy foods and their role in vegetarian diets. Nutrients. 2018;10(1):43. https://doi.org/10.3390/nu10010043.
Rodrigues MI, Iemma AF. Experimental design and process optimization. Boca Raton: CRC Press; 2014.
Rokem JS, Lantz AE, Nielsen J. Systems biology of antibiotic production by microorganisms. Nat Prod Rep. 2007;24(6):1262–87. https://doi.org/10.1039/b617765b.
Routledge SJ. Antifoams: the overlooked additive? Pharm Bioprocess. 2014;2(2):103–6. https://doi.org/10.2217/PBP.14.5.
Routledge SJ, Bill RM. The effect of antifoam addition on protein production yields. In: Bill RM, editor. Recombinant protein production in yeast: methods and protocols. Totowa: Humana Press; 2012. p. 87–97.
Rufino RD, Sarubbo LA, Campos-Takaki GM. Enhancement of stability of biosurfactant produced by Candida lipolytica using industrial residue as substrate. World J Microbiol Biotechnol. 2006;23(5):729–34. https://doi.org/10.1007/s11274-006-9278-2.
Sabu A, Sarita S, Pandey A, et al. Solid-state fermentation for production of phytase by Rhizopus oligosporus. Appl Biochem Biotechnol. 2002;102(1):251–60. https://doi.org/10.1385/ABAB:102-103:1-6:251.
Sakiewicz P, Piotrowski K, Cebula J, et al. Alternative utilization of protein-rich waste by its conversion into biogas in co-fermentation conditions. Pol J Environ Stud. 2017;26(3):1225–31. https://doi.org/10.15244/pjoes/68189.
Sastraatmadja DD, Tomita F, Kasai T. Production of high-quality Oncom, a traditional Indonesian fermented food, by the inoculation with selected mold strains in the form of pure culture and solid inoculum. J Grad Sch Agr Hokkaido Univ. 2002;70(2):111–27.
Shabtai Y. Production of exopolysaccharides by Acinetobacter strains in a controlled fed-batch fermentation process using soap stock oil (SSO) as carbon source. Int J Biol Macromol. 1990;12(2):145–52. https://doi.org/10.1016/0141-8130(90)90066-j.
Sheppard JD, Mulligan CN. The production of surfactin by Bacillus subtilis grown on peat hydrolysate. Appl Microbiol Biotechnol. 1987;27(2):110–6. https://doi.org/10.1007/BF00251931.
Shibasaki K, Hesseltine CW. Miso – I. Preparation of soybeans for fermentation. J Biochem Microbiol Technol Eng. 1961;3(2):161–74. https://doi.org/10.1002/jbmte.390030206.
Shiloach J, Fass R. Growing E. coli to high cell density – a historical perspective on method development. Biotechnol Adv. 2005;23(5):345–57. https://doi.org/10.1016/j.biotechadv.2005.04.004.
Shurtleff W, Aoyagi A. History of fermented black soybeans (165 BC to 2011): extensively annotated bibliography and sourcebook. Lafayette: Soyinfo Center; 2011.
Singh SM, Panda AK. Solubilization and refolding of bacterial inclusion body proteins. J Biosci Bioeng. 2005;99(4):303–10. https://doi.org/10.1263/jbb.99.303.
Singh V, Haque S, Niwas R, et al. Strategies for fermentation medium optimization: an in-depth review. Front Microbiol. 2017;7:2087. https://doi.org/10.3389/fmicb.2016.02087.
Siso M. The biotechnological utilization of cheese whey: a review. Bioresour Technol. 1996;57(1):1–11. https://doi.org/10.1016/0960-8524(96)00036-3.
Skrypnik K, Suliburska J. Association between the gut microbiota and mineral metabolism. J Sci Food Agric. 2018;98(7):2449–60. https://doi.org/10.1002/jsfa.8724.
Solaiman DK, Ashby RD, Nunez A, et al. Production of sophorolipids by Candida bombicola grown on soy molasses as substrate. Biotechnol Lett. 2004;26(15):1241–5. https://doi.org/10.1023/B:BILE.0000036605.80577.30.
Solaiman DKY, Ashby RD, Zerkowski JA, et al. Simplified soy molasses-based medium for reduced-cost production of sophorolipids by Candida bombicola. Biotechnol Lett. 2007;29(9):1341–7. https://doi.org/10.1007/s10529-007-9407-5.
Stanbury PF, Whitaker A, Hall SJ. Principles of fermentation technology. 2nd ed. Tarrytown: Pergamon; 1995.
Sun N, Wang Y, Li YT, et al. Sugar-based growth, astaxanthin accumulation and carotenogenic transcription of heterotrophic Chlorella zofingiensis (chlorophyta). Process Biochem. 2008;43(11):1288–92. https://doi.org/10.1016/j.procbio.2008.07.014.
Surono IS. Ethnic fermented foods and beverages of Indonesia. In: Tamang YP, editor. Ethnic fermented foods and alcoholic beverages of Asia. Delhi: Springer; 2016. p. 341–82.
Syed R, Saggar S, Tate K, et al. Assessing the performance of floating biofilters for oxidation of methane from dairy effluent ponds. J Environ Qual. 2017;46(2):272–80. https://doi.org/10.2134/jeq2016.08.0310.
Tao TL, Cui FJ, Chen XX, et al. Improved mycelia and polysaccharide production of Grifola frondosa by controlling morphology with microparticle Talc. Microb Cell Fact. 2018;17(1) https://doi.org/10.1186/s12934-017-0850-2.
Thomas L, Larroche C, Pandey A. Current developments in solid-state fermentation. Biochem Eng J. 2013;81:146–61. https://doi.org/10.1016/j.bej.2013.10.013.
Thompson DN, Fox SL, Bala GA. The effect of pretreatments on surfactin production from potato process effluent by Bacillus subtilis. In: Davison BH, McMillan JD, Finkelstein M, editors. Twenty-second symposium on biotechnology for fuels and chemicals. New York: Springer; 2001. p. 487–501.
Torzillo G, Pushparaj B, Masojidek J, et al. Biological constraints in algal biotechnology. Biotechnol Bioprocess Eng. 2003;8(6):338–48. https://doi.org/10.1007/BF02949277.
Tripathi NK. Production and purification of recombinant proteins from Escherichia coli. ChemBioEng Rev. 2016;3(3):116–33. https://doi.org/10.1002/cben.201600002.
ul Haq I, Idrees S, Rajoka M. Production of lipases by Rhizopus oligosporous by solid-state fermentation. Process Biochem. 2002;37(6):637–41. https://doi.org/10.1016/s0032-9592(01)00252-7.
Valero F, del Rio JL, Poch M, et al. Fermentation behaviour of lipase production by Candida rugosa growing on different mixtures of glucose and olive oil. J Ferment Bioeng. 1991;72(5):399–401. https://doi.org/10.1016/0922-338x(91)90095-x.
Van Niel E, Hahn-Hägerdal B. Nutrient requirements of lactococci in defined growth media. Appl Microbiol Biotechnol. 1999;52(5):617–27. https://doi.org/10.1007/s002530051569.
Walker GM, White NA. Introduction to fungal physiology. In: Kavanagh K, editor. Fungi, biology and applications. 3rd ed. Hoboken: Wiley-Blackwell; 2017. p. 1–34.
Wan M, Zhang Z, Wang J, et al. Sequential heterotrophy-dilution-photoinduction cultivation of Haematococcus pluvialis for efficient production of astaxanthin. Bioresour Technol. 2015;198:557–63. https://doi.org/10.1016/j.biortech.2015.09.031.
Welch RM. The biological significance of nickel. J Plant Nutr. 1981;3(1-4):345–56. https://doi.org/10.1080/01904168109362843.
Xin F, Geng A. Horticultural waste as the substrate for cellulase and hemicellulase production by Trichoderma reesei under solid-state fermentation. Appl Biochem Biotechnol. 2009;162(1):295–306. https://doi.org/10.1007/s12010-009-8745-2.
Yan D, Lu Y, Chen YF, et al. Waste molasses alone displaces glucose-based medium for microalgal fermentation towards cost-saving biodiesel production. Bioresour Technol. 2011;102(11):6487–93. https://doi.org/10.1016/j.biortech.2011.03.036.
Yang J, Yang Y, Wu WM, et al. Evidence of polyethylene biodegradation by bacterial strains from the guts of plastic-eating waxworms. Environ Sci Technol. 2014;48(23):13776–84. https://doi.org/10.1021/es504038a.
Zhang J, Martin C, Shifflet M, et al. Development of a defined medium fermentation process for physostigmine production by Streptomyces griseofuscus. Appl Microbiol Biotechnol. 1996;44(5):568–75. https://doi.org/10.1007/BF00172487.
Zhang G, Mills DA, Block DE. Development of chemically defined media supporting high-cell-density growth of lactococci, enterococci, and streptococci. Appl Environ Microbiol. 2008a;75(4):1080–7. https://doi.org/10.1128/aem.01416-08.
Zhang Y, Xin J, Chen L, et al. Biosynthesis of poly-3-hydroxybutyrate with a high molecular weight by methanotroph from methane and methanol. J Nat Gas Chem. 2008b;17(1):103–9. https://doi.org/10.1016/s1003-9953(08)60034-1.
Zhao G, Yao Y, Wang C, et al. Comparative genomic analysis of Aspergillus oryzae strains 3.042 and RIB40 for soy sauce fermentation. Int J Food Microbiol. 2013;164(2-3):148–54. https://doi.org/10.1016/j.ijfoodmicro.2013.03.027.
Zheng XW, Han BZ. Baijiu, Chinese liquor: history, classification and manufacture. J Ethnic Foods. 2016;3(1):19–25. https://doi.org/10.1016/j.jef.2016.03.001.
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Allikian, K., Edgar, R., Syed, R., Zhang, S. (2019). Fundamentals of Fermentation Media. In: Berenjian, A. (eds) Essentials in Fermentation Technology. Learning Materials in Biosciences. Springer, Cham. https://doi.org/10.1007/978-3-030-16230-6_2
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