Abstract
Zebrafishbrain.org is an online neuroanatomical atlas of the embryonic zebrafish. The atlas uses high-resolution confocal images and movies of transgenic lines to describe different brain structures. This chapter covers detail of materials and protocols that we employ to generate data for the atlas.
This is a preview of subscription content, log in via an institution to check access.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Norton W, Bally-Cuif L (2010) Adult zebrafish as a model organism for behavioural genetics. BMC Neurosci 11:90
Ahrens MB, Li JM, Orger MB et al (2012) Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature 485:471–477
Stewart A, Gaikwad S, Kyzar E et al (2012) Modeling anxiety using adult zebrafish: a conceptual review. Neuropharmacology 62:135–143
Mathur P, Guo S (2010) Use of zebrafish as a model to understand mechanisms of addiction and complex neurobehavioral phenotypes. Neurobiol Dis 40:66–72
Prober DA, Rihel J, Onah AA et al (2006) Hypocretin/orexin overexpression induces an insomnia-like phenotype in zebrafish. J Neurosci 26:13400–13410
Lein ES, Hawrylycz MJ, Ao N et al (2007) Genome-wide atlas of gene expression in the adult mouse brain. Nature 445:168–176
Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL et al (2012) An anatomically comprehensive atlas of the adult human brain transcriptome. Nature 489:391–399
Rink E, Wullimann MF (2002) Connections of the ventral telencephalon and tyrosine hydroxylase distribution in the zebrafish brain (Danio rerio) lead to identification of an ascending dopaminergic system in a teleost. Brain Res Bull 57:385–387
Mueller T, Dong Z, Berberoglu MA et al (2011) The dorsal pallium in zebrafish, Danio rerio (Cyprinidae, Teleostei). Brain Res 1381:95–105
Wullimann MF, Rupp B, Reichert H (eds) (1996) Neuroanatomy of the zebrafish brain: a topological atlas. Basel, Switzerland: Birkhäuser Verlag, p. 160
Wilson SW, Ross LS, Parrett T et al (1990) The development of a simple scaffold of axon tracts in the brain of the embryonic zebrafish, Brachydanio rerio. Development 108(1):121–145
Buckley K, Kelly RB (1985) Identification of a transmembrane glycoprotein specific for secretory vesicles of neural and endocrine cells. J Cell Biol 100:1284–1294
Hendricks M, Jesuthasan S (2007) Asymmetric innervation of the habenula in zebrafish. J Comp Neurol 502:611–619
Miyasaka N, Morimoto K, Tsubokawa T et al (2009) From the olfactory bulb to higher brain centers: genetic visualization of secondary olfactory pathways in zebrafish. J Neurosci 29:4756–4767
Cerveny KL, Cavodeassi F, Turner KJ et al (2010) The zebrafish flotte lotte mutant reveals that the local retinal environment promotes the differentiation of proliferating precursors emerging from their stem cell niche. Development 137:2107–2115
Collins RT, Linker C, Lewis J (2010) MAZe: a tool for mosaic analysis of gene function in zebrafish. Nat Methods 7:219–223
Ronneberger O, Liu K, Rath M et al (2012) ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains. Nat Methods 9:735–742
Meta R, Roland N, Alida F, Olaf R et al (2012) Generation of high quality multi-view confocal 3D datasets of zebrafish larval brains suitable for analysis using Virtual Brain Explorer (ViBE-Z) software. Nat Protoc Exchange. doi:10.1038/protex.2012.031
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Turner, K.J., Bracewell, T.G., Hawkins, T.A. (2014). Anatomical Dissection of Zebrafish Brain Development. In: Sprecher, S. (eds) Brain Development. Methods in Molecular Biology, vol 1082. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-655-9_14
Download citation
DOI: https://doi.org/10.1007/978-1-62703-655-9_14
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-62703-654-2
Online ISBN: 978-1-62703-655-9
eBook Packages: Springer Protocols