Skip to main content

Nucleic Acid Pool Preparation and Characterization

  • Protocol
  • First Online:
Nucleic Acid and Peptide Aptamers

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 535))

Abstract

Random sequence nucleic acid pools can be used in a variety of applications, including the selection of functional nucleic acids such as protein binding sites, aptamers, and ribozymes. While the design, synthesis, and purification of pools is relatively straightforward, keeping track of the size and complexity of a nucleic acid pool can sometimes task even an experienced researcher. The following protocol takes the reader through the steps necessary for the preparation of a pool of known complexity.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Nimjee, S.M., Rusconi, C.P. and Sullenger, B.A. (2005) APTAMERS: an emerging class of therapeutics. Annu. Rev. Med. 56, 555–583.

    Article  PubMed  CAS  Google Scholar 

  2. Mairal, T., Cengiz Ozalp, V., Lozano Sanchez, P., Mir, M., Katakis, I. and O’;Sullivan, C.K. (2008) Aptamers: molecular tools for analytical applications. Anal. Bioanal. Chem. 390, 989–1007.

    Article  PubMed  CAS  Google Scholar 

  3. Gopinath, S.C. (2007) Methods developed for SELEX. Anal. Bioanal. Chem. 387, 171–182.

    Article  PubMed  CAS  Google Scholar 

  4. Blank, M. and Blind, M. (2005) Aptamers as tools for target validation. Curr. Opin. Chem. Biol. 9, 336–342.

    Article  PubMed  CAS  Google Scholar 

  5. Bartel, D.P. and Szostak, J.W. (1993) Isolation of new ribozymes from a large pool of random sequences. Science, 261, 1411–1418.

    Article  PubMed  CAS  Google Scholar 

  6. Sambrook, J. and Russel, D.W. (2001) Molecular Cloning: A Laboratory Manual. 3rd ed. Cold Springs Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  7. Pollard, J., Bell, S.D. and Ellington, A.D. (2000) In Beaucage, S. L., Bergstrom, D.E., Glick, G.D. and Jones, R.A. (ed.), Current Protocols in Nucleic Acid Chemistry. John Wiley and Sons, New York, pp. 9.2.1–9.2.23.

    Google Scholar 

  8. Meyers, L.A., Lee, J.F., Cowperthwaite, M. and Ellington, A.D. (2004) The robustness of naturally and artificially selected nucleic acid secondary structures. J. Mol. Evol. 58, 681–691.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Humana Press, a part of Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Piasecki, S.K., Hall, B., Ellington, A.D. (2009). Nucleic Acid Pool Preparation and Characterization. In: Mayer, G. (eds) Nucleic Acid and Peptide Aptamers. Methods in Molecular Biology™, vol 535. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-59745-557-2_1

Download citation

  • DOI: https://doi.org/10.1007/978-1-59745-557-2_1

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-934115-89-3

  • Online ISBN: 978-1-59745-557-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics