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A Brief Review of Other Notable Protein Detection Methods on Blots

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Protein Blotting and Detection

Part of the book series: Methods in Molecular Biology ((MIMB,volume 536))

Summary

Several methods have been used for detecting proteins on membranes. These include the use of quantum dot luminescent labels, oxyblot immunochemical detection, polymer immunocomplexes, “coupled” probing approach, in situ renaturation of proteins for detecting enzyme activities in crude or purified preparations, immunochromatographic assay, western-phosphatase assay, and the use of Congo red dye, a cosmetic color named Alta, Pro-Q Emerald 488 dye, or amine-reactive dye in combination with alkaline phosphatase and horseradish peroxidase–antibody conjugates for the simultaneous trichromatic fluourescence detection of proteins. Several methods have been used to improve the detection of proteins on membranes, including glutaraldehyde treatment of nitrocellulose blots, elimination of keratin artifacts in immunoblots probed with polyclonal antibodies, and the washing of immunoblots with excessive water and manipulation of Tween-20 in wash buffer. These methods are briefly reviewed in this chapter.

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References

  1. Kurien, B.T., Hensley, K., Bachmann, M., and Scofield, R.H. (2006) Oxidatively modified autoantigens in autoimmune diseases. Free Radic Biol Med. 41, 549–556.

    Article  PubMed  CAS  Google Scholar 

  2. Castegna, A., Aksenov, M., Thongboonkerd, V., Klein, J.B., Pierce, W.M., Booze, R., et al (2002) Proteomic identification of oxidatively modified proteins in Alzheimer’s disease brain. II. Dihydropyrimidinase-related protein 2, alpha-enolase and heat shock ­cognate 71. J Neurochem. 82, 1524–1532.

    Article  PubMed  CAS  Google Scholar 

  3. Dean, R.T., Fu, S., Stocker, R., and Davies, M.J. (1997) Biochemistry and pathology of radical-mediated protein oxidation. Biochem J. 324, 1–18. Review.

    PubMed  CAS  Google Scholar 

  4. Davies, K.J. (2001) Degradation of oxidized proteins by the 20S proteasome. Biochimie 83, 301–310. Review.

    Article  PubMed  CAS  Google Scholar 

  5. Stadtman, E.R. (1990) Metal ion-catalyzed oxidation of proteins: biochemical mechanism and biological consequences. Free Radic Biol Med. 9, 315–325. Review. Erratum in Free Radic Biol Med. 10, 249.

    Google Scholar 

  6. Aksenov, M., Aksenova, M., Butterfield, D.A., and Markesbery, W.R. (2000) Oxidative modification of creatine kinase BB in Alzheimer’s disease brain. J Neurochem. 74, 2520–2527.

    Article  PubMed  CAS  Google Scholar 

  7. Krajewski, S., Zapata, J.M., and Reed, J.C. (1996) Detection of multiple antigens on western blots. Anal Biochem. 236, 221–228.

    Article  PubMed  CAS  Google Scholar 

  8. Gingrich, J.C., Davis, D.R., and Nguyen, Q. (2000) Multiplex detection and quantitation of proteins on western blots using fluorescent probes. Biotechniques 29, 636–642.

    PubMed  CAS  Google Scholar 

  9. Makrides, S.C., Gasbarro, C., and Bello, J.M. (2005) Bioconjugation of quantum dot luminescent probes for western blot analysis. Biotechniques 39, 501–506.

    Article  PubMed  CAS  Google Scholar 

  10. Bruchez, M., Jr, Moronne, M., Gin, P., Weiss, S., and Alivisatos, A.P. (1998) Semiconductor nanocrystals as fluorescent biological labels. Science 281, 2013–2016.

    Article  PubMed  CAS  Google Scholar 

  11. Wu, X., Liu, H., Liu, J., Haley, K.N., Treadway, J.A., Larson, J.P., et al (2003) Immunofluorescent labeling of cancer marker Her2 and other cellular targets with semiconductor quantum dots. Nat Biotechnol. 21, 41–46.

    Article  PubMed  CAS  Google Scholar 

  12. Dubertret, B., Skourides, P., Norris, D.J., Noireaux, V., Brivanlou, A.H., and Libchaber, A. (2002) In vivo imaging of quantum dots encapsulated in phospholipid micelles. Science 298, 1759–1762.

    Article  PubMed  CAS  Google Scholar 

  13. Martin, K., Hart, C., Liu, J., Leung, W.Y., and Patton, W.F. (2003) Simultaneous trichromatic fluorescence detection of proteins on western blots using an amine-reactive dye in combination with alkaline phosphatase- and horseradish peroxidase-antibody conjugates. Proteomics 3, 1215–1227.

    Article  PubMed  CAS  Google Scholar 

  14. Fukuda, T., Tani, Y., Kobayashi, T., Hirayama, Y., and Hino, O. (2000) A new western blotting method using polymer immunocomplexes: detection of Tsc1 and Tsc2 expression in various cultured cell lines. Anal Biochem. 285, 274–276.

    Article  PubMed  CAS  Google Scholar 

  15. Wu, M., Stockley, P.G., and Martin, W.J., II. (2002) An improved western blotting technique effectively reduces background. Electrophoresis 23, 2373–2376.

    Article  PubMed  CAS  Google Scholar 

  16. Morrisey, J.H. (1981) Silver stain for proteins in polyacrylamide gels: a modified procedure with enhanced uniform sensitivity. Anal Biochem. 117, 307–310.

    Article  Google Scholar 

  17. Dunbar, B.S. (1987) Two Dimensional Electrophoresis Immunological Techniques, Plenum, New York, p. 74.

    Book  Google Scholar 

  18. Ocha, D. (1983) Protein contaminants of sodium dodecyl sulfate-polyacrylamide gel. Anal Biochem. 135, 470–474.

    Article  Google Scholar 

  19. Bérubé, B., Coutu, L., Lefièvre, L., Bégin. S., Dupont, H., et al (1994) The elimination of keratin artifacts in immunoblots probed with polyclonal antibodies. Anal Biochem 217, 331–333.

    Article  PubMed  Google Scholar 

  20. Sundaram, P. (1996) A simplified ‘coupled’ probing approach for the detection of proteins on dot and western blots. J Immunol Methods 195, 149–152.

    Article  PubMed  CAS  Google Scholar 

  21. Béguin, P. (1983) Detection of cellulase activity in polyacrylamide gels using Congo red-stained agar replicas. Anal Biochem. 131, 333–336.

    Article  PubMed  Google Scholar 

  22. Mehta, S. and Rajput, Y.S. (1998) A method for staining of proteins in nitrocellulose membrane and acrylamide gel using Congo red dye. Anal Biochem. 263, 248–251.

    Article  PubMed  CAS  Google Scholar 

  23. Pal, J.K., Godbole, D., and Sharma, K. (2004) Staining of proteins on SDS polyacrylamide gels and on nitrocellulose membranes by Alta, a colour used as a cosmetic. J Biochem Biophys Methods 61, 339–347.

    Article  PubMed  CAS  Google Scholar 

  24. Shackelford, D.A. and Zivin, J.A. (1993) Renaturation of calcium/calmodulin-dependent protein kinase activity after electrophoretic transfer from sodium dodecyl sulfate-polyacrylamide gels to membranes. Anal Biochem. 211, 131–138.

    Article  PubMed  CAS  Google Scholar 

  25. Hart, C., Schulenberg, B., Steinberg, T.H., Leung, W.Y., and Patton, W.F. (2003) Detection of glycoproteins in polyacrylamide gels and on electroblots using Pro-Q Emerald 488 dye, a fluorescent periodate Schiff-base stain. Electrophoresis 24, 588–598.

    Article  PubMed  CAS  Google Scholar 

  26. Steinberg, T.H., Pretty On Top, K., Berggren, K.N., Kemper, C., Jones, L., Diwu, Z., et al (2001) Rapid and simple single nanogram detection of glycoproteins in polyacrylamide gels and on electroblots. Proteomics 1, 841–855.

    Article  PubMed  CAS  Google Scholar 

  27. Paek, S.H., Lee, S.H., Cho, J.H., and Kim, Y.S. (2000) Development of rapid one-step immunochromatographic assay. Methods 22, 53–60.

    Article  PubMed  CAS  Google Scholar 

  28. Maya, R. and Oren, M. (2000) Unmasking of phosphorylation-sensitive epitopes on p53 and Mdm2 by a simple western-phosphatase procedure. Oncogene 19, 3213–3215.

    Article  PubMed  CAS  Google Scholar 

  29. Dominguez, D.C., Adams, H., and Hageman, J.H. (1999) Immunocytochemical localization of a calmodulinlike protein in Bacillus subtilis cells. J Bacteriol. 181, 4605–4610.

    PubMed  CAS  Google Scholar 

  30. Liang, F.T., Granstrom, D.E., and Shi, Y.F. (1997) Concentrating protein samples for sodium dodecyl sulphate-polyacrylamide gel electrophoresis and isoelectric focusing using protein-blotting membranes. J Chromatogr A 764, 143–150.

    Article  PubMed  CAS  Google Scholar 

  31. Spinola, S.M. and Cannon, J.G. (1985) Different blocking agents cause variation in the immunologic detection of proteins transferred to nitrocellulose membranes. J Immunol Methods 81, 161–165.

    Article  PubMed  CAS  Google Scholar 

  32. Batteiger, B., Newhall, W.J., Newhall, V., and Jones, R.B. (1982) The use of Tween 20 as a blocking agent in the immunological detection of proteins transferred to nitrocellulose membranes. J Immunol Methods 55, 297–307.

    Article  PubMed  CAS  Google Scholar 

  33. Lin, W. and Kasamatsu, H. (1983) On the electrotransfer of polypeptides from gels to nitrocellulose membranes. Anal Biochem. 128, 302–311.

    Article  PubMed  CAS  Google Scholar 

  34. Hoffman, W.L., Jump, A.A., and Ruggles, A.O. (1994) Soaking nitrocellulose blots in acidic buffers improves the detection of bound antibodies without loss of biological activity. Anal Biochem 217, 153–155.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Biji T. Kurien .

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Kurien, B.T., Scofield, R.H. (2009). A Brief Review of Other Notable Protein Detection Methods on Blots. In: Kurien, B., Scofield, R. (eds) Protein Blotting and Detection. Methods in Molecular Biology, vol 536. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-59745-542-8_56

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  • DOI: https://doi.org/10.1007/978-1-59745-542-8_56

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-934115-73-2

  • Online ISBN: 978-1-59745-542-8

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