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Bacterial Efflux Pump Inhibitors

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New Antibiotic Targets

Summary

Infections caused by multidrug-resistant Gram-negative pathogens play a major role in the morbidity and mortality of hospitalized patients. The rise of resistance to current antibiotic therapies has made the discovery of new agents urgent. One of the major antibiotic resistance mechanisms utilized by more than 15 species of Gram-negative bacterial cells is the Resistance Nodulation Division (RND) efflux pump, which eliminates several classes of antibiotics such as penicillins and cephalosporin macrolides aminoglycosides, fluoroquinolonesx and tetracyclines. Here we describe a multistep process to identify compounds that inhibit the RND-type efflux pumps. This involves measuring the inhibition of accumulation of ethidium bromide in E. coli or Haemophilus influenzae cells and confirming that the inhibition is specific for the efflux pumps by using genetic constructs and biochemical methods to measure nonspecific inhibition due to e.g. intrinsic antibacterial activity or membrane disruption. In whole bacterial cells synergism antagonism or indifference of the combination of an antibiotic with the putative inhibitor is determined and this is then confirmed by quantitating viable bacterial cells in liquid culture over24h.

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References

  1. Li X.-Z., and Nikaido, H. (2004) Efflux-mediated drug resistance in bacteria. Drugs 64 159ā€“204.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  2. Yu E. W., McDermott, G., Zgurskaya, H., Nikaido, H., and Koshland, D. E. Jr.(2003) Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump. Science 300 976ā€“980.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  3. Yu, E. W., Aires, J. R., and Nikaido H. (2003) AcrB multidrug efflux pump of Escherichia coli: Composite substrate-binding cavity of exceptional flexibility generates its extremely wide substrate specificity. J.Bacteriol.185, 5657ā€“5664.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  4. Yu E.W., Aires J. R., McDermott, G., and Nikaido, H. (2005) A Aperiplasmic drug-binding site of the AcrB multidrug efflux pump: A crystallographic and site-directed mutagenesis study. J. Bacteriol. 187, 6804ā€“6815.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  5. Murakami, S., Nakashima, R., Yamashita, E., and Yamaguchi, A. (2002) Crystal structure of bacterial multidrug efflux transporter AcrB. Nature 419, 587ā€“593.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  6. Murakami, S., Nakashima, R., Yamashita, E., Matsumoto, T., and Yamaguchi, A. (2006) Crystal structures of a multidrug transporter reveal a functionally rotating mechanism. Nature 443 173ā€“179.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  7. Higgins, M. K., Bokma, E., Koronakis, E., Hughes, C., and Koronakis, V.(2004) Structure of the periplasmic component of a bacterial drug efflux pump. Proc.Natl. Acad.Sci.USA 101 9994ā€“9999.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  8. Anonymous (2003) National nosocomial infections surveillance (NNIS) system report data summary from January 1992 through June 2003, issued August 2003. Amer. J. Infect. Control 31 481ā€“498.

    Google ScholarĀ 

  9. Baker, C. N., Banerjee, S. N., and Tenover, F. C.(1994) Evaluation of alamar colorimetric MIC method for antimicrobial susceptibility testing of Gram-negative bacteria. J.Clin. Microbiol. 32 1261ā€“1267.

    CASĀ  PubMedĀ  Google ScholarĀ 

  10. Clinical and Laboratory Standards Institute. (2006) Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically; Approved Standard ā€“ Seventh Edition. CLSI Document M7-A7.

    Google ScholarĀ 

  11. Amsterdam, D. (1996) Susceptibility testing of antimicrobials in liquid media. In Antibiotics in Laboratory Medicine 4th ed. (V. Lorian ed.). The Williams and Wilkins Co.Baltimore MD, pp. 52ā€“111.

    Google ScholarĀ 

  12. Eliopoulos, G. M., and Moellering, R. C. Jr. (1996) Antimicrobial combination. In Antibiotics in Laboratory Medicine, 4th ed.(V. Lorian ed.).The Williams and Wilkins Co.Baltimore MD pp.330ā€“396.

    Google ScholarĀ 

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Acknowledgments

We acknowledge the work of numerous former colleagues at Pharmacia who started this research program: D. E. Decker M. P. Sheets S. E. Buxser M. R. Barbachyn R.Gadwood G.Zurenko J. Bourdage G. F. Hess J. K. Gibson A. G. Morgan J. E. Mott etal. We also thank Keith Poole and colleagues at Queens University in Kingston Ontario for E. coli strain constructs.

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Ā© 2008 Humana Press Inc.

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Kamicker, B.J. et al. (2008). Bacterial Efflux Pump Inhibitors. In: Champney, W.S. (eds) New Antibiotic Targets. Methods In Molecular Medicineā„¢, vol 142. Humana Press. https://doi.org/10.1007/978-1-59745-246-5_15

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  • DOI: https://doi.org/10.1007/978-1-59745-246-5_15

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-915-4

  • Online ISBN: 978-1-59745-246-5

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